BAC Information

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BAC

Clone NameB6Ng01-053G07
Chromosome8 (Build37)
Map Location 131,258,596 - 131,378,439
singlet/doubletdoublet
Overlap geneLOC100042659
Upstream geneNrp1, LOC668494, Itgb1
Downstream geneLOC100042667, Ccdc7, 1700008F21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053G07.bB6Ng01-053G07.g
ACCDH876455DH876456
length1,012525
definitionDH876455|Mus musculus domesticus DNA, BAC clone: B6Ng01-053G07, 5' end.DH876456|Mus musculus domesticus DNA, BAC clone: B6Ng01-053G07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,258,596 - 131,259,603)(131,377,909 - 131,378,439)
sequence
gaattccaggtgtatctgctgccccagttctcatagatctaaacaagaag
acagttgagaattgttctccaaataagtcttagagaggttgcttctgcta
attattgaactgtgttctccattgtgagcaccataaggtgcttaaggtta
ataacaaacttacataaacatctaaaatttcactcactgtagctacctgt
tgagagcccaattcatctgttccatattgaaggacaacatgcacatttcc
acaaaattctacagagtgttaatggaagggaactctttcataatcattct
gaaaaaaggtggctggagaagaggatcatttaagcaccatctgccagtag
ttctagaacctggattatagcaaaggggagcagctgtttgcttatgtggt
tggttgagttcttacagtgcttatgacacaggtcgcttcatagtaggtac
atattaatatcacatacatagaatctggttaaactgttctgtggatgggg
acagtgaacttaggtttttaaaagcacctatgggggattctattttgtgg
atgggcttgagatgcactgcctctacaaacttattcactcgtttgatgtc
acagaatactctttcatggaaactgagtttggaaataccacttttcccct
tattccctcttccttctttgcctctcccttcttcctcctcctcctcctcc
tcctcctgttgctgttgatttttttttttccctttgggactaggtcttat
taagtaattcagtaggtgacctcatgctccttctgcctcagtcatccaaa
ttctaggattgcatacctgaggcatcatacatttttaatcttatagtcct
aattccttaattaaaagaactcttggccaattcattttaatatttgtcat
tttgccagatcccttaaagagtcagaatcctgcctttatggggcttacaa
tttgaagtttcctgatttacttctcaccgtaaaccattagaactttctaa
aacaggtctctt
aatgaatgaaaaaaatttaaataaaatttagaattttaatagcagactaa
atgaaacaaaaattgatctgtgaatatatagatgttttgaaagaagaatt
cagaggaaataagaattaaaataaaggaagaaattgtatgtacaggacac
cattatgcaaacccagtgtgtaaagttcaatgaccactagggatatgacc
atgctccagaaagtatacgggcaacacaaattggacttagtgtgggtatt
ggggaaagtgggagctcgagggtgggagggtggacctgggagtaatggga
cgtaaatgtgatggggtgcactgtcgaaaggtatcaaataataaaaacat
gttggggaagggggaaagaaactcatcttgccttcaaagataaatagcac
tttagagtgagaaattggaagaagtatttcagaaaatgggatcagtaaaa
aagcaagcatcactattctaatatctagtgccacaaattatatgtatgta
tgtatgtatgtatgtatgtatgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_131258596_131259603
seq2: B6Ng01-053G07.b_46_1057

seq1  GAATTCCAGGTGTATCTGCTGCCCCAGTTCTCATAGATCTAAACAAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTGTATCTGCTGCCCCAGTTCTCATAGATCTAAACAAGAAG  50

seq1  ACAGTTGAGAATTGTTCTCCAAATAAGTCTTAGAGAGGTTGCTTCTGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGAGAATTGTTCTCCAAATAAGTCTTAGAGAGGTTGCTTCTGCTA  100

seq1  ATTATTGAACTGTGTTCTCCATTGTGAGCACCATAAGGTGCTTAAGGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGAACTGTGTTCTCCATTGTGAGCACCATAAGGTGCTTAAGGTTA  150

seq1  ATAACAAACTTACATAAACATCTAAAATTTCACTCACTGTAGCTACCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAACTTACATAAACATCTAAAATTTCACTCACTGTAGCTACCTGT  200

seq1  TGAGAGCCCAATTCATCTGTTCCATATTGAAGGACAACATGCACATTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCCCAATTCATCTGTTCCATATTGAAGGACAACATGCACATTTCC  250

seq1  ACAAAATTCTACAGAGTGTTAATGGAAGGGAACTCTTTCATAATCATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATTCTACAGAGTGTTAATGGAAGGGAACTCTTTCATAATCATTCT  300

seq1  GAAAAAAGGTGGCTGGAGAAGAGGATCATTTAAGCACCATCTGCCAGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAGGTGGCTGGAGAAGAGGATCATTTAAGCACCATCTGCCAGTAG  350

seq1  TTCTAGAACCTGGATTATAGCAAAGGGGAGCAGCTGTTTGCTTATGTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAACCTGGATTATAGCAAAGGGGAGCAGCTGTTTGCTTATGTGGT  400

seq1  TGGTTGAGTTCTTACAGTGCTTATGACACAGGTCGCTTCATAGTAGGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGAGTTCTTACAGTGCTTATGACACAGGTCGCTTCATAGTAGGTAC  450

seq1  ATATTAATATCACATACATAGAATCTGGTTAAACTGTTCTGTGGATGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAATATCACATACATAGAATCTGGTTAAACTGTTCTGTGGATGGGG  500

seq1  ACAGTGAACTTAGGTTTTTAAAAGCACCTATGGGGGATTCTATTTTGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAACTTAGGTTTTTAAAAGCACCTATGGGGGATTCTATTTTGTGG  550

seq1  ATGGGCTTGAGATGCACTGCCTCTACAAACTTATTCACTCGTTTGATGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTTGAGATGCACTGCCTCTACAAACTTATTCACTCGTTTGATGTC  600

seq1  ACAGAATACTC-TTCATGGAAACTGAG-TTGGAAATACCACTTTTCCCCT  648
      ||||||||||| ||||||||||||||| ||||||||||||||||||||||
seq2  ACAGAATACTCTTTCATGGAAACTGAGTTTGGAAATACCACTTTTCCCCT  650

seq1  TATTCCCTCTTCCTTCTTTGCCTCTCCCTTCTTCCTCCTCCTCCTCCTCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCCTCTTCCTTCTTTGCCTCTCCCTTCTTCCTCCTCCTCCTCCTCC  700

seq1  TCCTCCTGTTGCTGTTGA-TTTTTTTTTTCCCTTTGGGACTAGGTCTTAT  747
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCCTCCTGTTGCTGTTGATTTTTTTTTTTCCCTTTGGGACTAGGTCTTAT  750

seq1  TAAGTAATTCAGTAGGTGACCTCATGCTCCTTCTGCCTCAGTCATCCAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAATTCAGTAGGTGACCTCATGCTCCTTCTGCCTCAGTCATCCAAA  800

seq1  TTCTAGGATTGCATACCTGAGGCATCATACATTTTTAATCTTATAGTCCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGATTGCATACCTGAGGCATCATACATTTTTAATCTTATAGTCCT  850

seq1  AA-TCCTTAATTAAAAGAACTCTTGGCCAATTCATTTTAATATTTGTCAT  896
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTTAATTAAAAGAACTCTTGGCCAATTCATTTTAATATTTGTCAT  900

seq1  TTTGCCAGATCCCTTAAAGAGTCAGTAT-CTGCCTTTAT-GGGCTTACAA  944
      ||||||||||||||||||||||||| || |||||||||| ||||||||||
seq2  TTTGCCAGATCCCTTAAAGAGTCAGAATCCTGCCTTTATGGGGCTTACAA  950

seq1  TTTTGAAGTTTTTCCTGATTTAC-TCTCAGCAGAAAGCATTAGAACTTTC  993
       |||||||  ||||||||||||| ||||| |  ||| |||||||||||||
seq2  -TTTGAAG--TTTCCTGATTTACTTCTCACCGTAAACCATTAGAACTTTC  997

seq1  TAAAACAGGTCTCTT  1008
      |||||||||||||||
seq2  TAAAACAGGTCTCTT  1012

seq1: chr8_131377909_131378439
seq2: B6Ng01-053G07.g_70_600 (reverse)

seq1  ATACATACATACATACATACATACATACATACATATAATTTGTGGCACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACATACATACATACATACATACATACATATAATTTGTGGCACTA  50

seq1  GATATTAGAATAGTGATGCTTGCTTTTTTACTGATCCCATTTTCTGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTAGAATAGTGATGCTTGCTTTTTTACTGATCCCATTTTCTGAAAT  100

seq1  ACTTCTTCCAATTTCTCACTCTAAAGTGCTATTTATCTTTGAAGGCAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTCCAATTTCTCACTCTAAAGTGCTATTTATCTTTGAAGGCAAGA  150

seq1  TGAGTTTCTTTCCCCCTTCCCCAACATGTTTTTATTATTTGATACCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTCTTTCCCCCTTCCCCAACATGTTTTTATTATTTGATACCTTTC  200

seq1  GACAGTGCACCCCATCACATTTACGTCCCATTACTCCCAGGTCCACCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGCACCCCATCACATTTACGTCCCATTACTCCCAGGTCCACCCTC  250

seq1  CCACCCTCGAGCTCCCACTTTCCCCAATACCCACACTAAGTCCAATTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTCGAGCTCCCACTTTCCCCAATACCCACACTAAGTCCAATTTGT  300

seq1  GTTGCCCGTATACTTTCTGGAGCATGGTCATATCCCTAGTGGTCATTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCCGTATACTTTCTGGAGCATGGTCATATCCCTAGTGGTCATTGAA  350

seq1  CTTTACACACTGGGTTTGCATAATGGTGTCCTGTACATACAATTTCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACACACTGGGTTTGCATAATGGTGTCCTGTACATACAATTTCTTCC  400

seq1  TTTATTTTAATTCTTATTTCCTCTGAATTCTTCTTTCAAAACATCTATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTAATTCTTATTTCCTCTGAATTCTTCTTTCAAAACATCTATAT  450

seq1  ATTCACAGATCAATTTTTGTTTCATTTAGTCTGCTATTAAAATTCTAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAGATCAATTTTTGTTTCATTTAGTCTGCTATTAAAATTCTAAAT  500

seq1  TTTATTTAAATTTTTTTCATTCATTGAATTC  531
      |||||||||||||||||||||||||||||||
seq2  TTTATTTAAATTTTTTTCATTCATTGAATTC  531