BAC Information

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BAC

Clone NameB6Ng01-053K09
Chromosome8 (Build37)
Map Location 90,117,629 - 90,272,582
singlet/doubletdoublet
Overlap geneZfp423
Upstream geneLonp2, Siah1a, ENSMUSG00000074178, BC004022, LOC666960, EG625298, EG330819, Cbln1, LOC100040294, 4933402J07Rik
Downstream geneLOC100040328, 5033428A16Rik, Heatr3, Papd5, Adcy7, Brd7, LOC100040369, Nkd1, 9130017C17Rik, Nod2, Cyld
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053K09.bB6Ng01-053K09.g
ACCDH876639DH876640
length9241,022
definitionDH876639|Mus musculus domesticus DNA, BAC clone: B6Ng01-053K09, 5' end.DH876640|Mus musculus domesticus DNA, BAC clone: B6Ng01-053K09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,271,661 - 90,272,582)(90,117,629 - 90,118,674)
sequence
gaattcccaggctgctgggtaagggtttttcaacaaactttctaatggaa
agagaagaagaggcaggaggggatcaggggtgggaggcaacaaaggatca
tgcaggattggttttttgtttgtttttgtttttgttttgtttggtttttt
ttgagacagggtttctctgtgtagccctggctgtcttggaactcactctg
tagaccaggctggcctcgaactcagaaatccacctgcctctgcctcctgg
gattaaaggcgtgtgggattaaaggcgtgtgccaccaagcccggccatgc
aggattgtttaataaagaaaggctgcactagccttgggtctaagaactac
caagcacaacatataggagtaaacttgctactcttgattctcgtccatac
agaaaagggggtcctgagaactcacgttttgccgcgctcccacattagca
gttgaggacagcattcttacttctttttagggaacaggttgcctctaggg
acccctgagggacctgaaagagcatctcacaggtatggagcactgttctc
agagcctttagccaagtcttcagtttcctctctggtccctgagcatttgc
ccaagtaatgtccacccagttctgaaggaagtaattctcctccttcagca
cccaggtataatgctggtttctgggacctcgagggtcagtcctccctccc
attctcctgccagggtttcgtattcttcccattcagcatctggaaaagcc
cagaatcagccgcgtctcagctccttggttaagattggagcagcctgagg
gaggcgctacagtccttacctgatatctccgcagatgcagacattctcta
gacttctgggaaggtcccaggaggcaggggtgtggccctcagaggaaagc
tgcctgctcacttctttgggaaca
gaattcctggaaacccttgggccagttaacagcaaaagagaccctgtcca
agcaacatggaagatgaaaagtcagggttctcctctgacctccacactca
tactgtggcaagcccaccattgacaacagccccctccccacacacacaca
ccacagttaaaccgtgtgtggaggtgtacatctgtcacctcagcatcagg
gtgactaagatgagtttaaggccaacctgggttacacaggtagaccagat
ctcaagtagaagctaagaaaaatacaaataaaacagttatactcagactt
ttggtaacaatgttctggttttctgtttgaaaaacaaaagcctcagccgg
gcgtggtggcgcacgcctttaatcccagcactcgggaggcagaggcaggc
gggtttctgagttcgaggccagcctggtctacagagtgagttccaggaca
accagggctacacagagaaaccctgtctcaaaaaaccaaaaaaaaaaaaa
aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaa
gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaggaaagaaaga
gaagaaaaacaaaagcctcaaccttaaaggtggtcttccttcctacctgt
cttccctcctcttcttccctcccaagcattttccctctagaggccaccag
gtggcgctcgatcccagcagaagatgctctgctcaaggcacccacagatg
tccactcagctgctaacctagctgtaagcccatccaaaggtggcaggaca
ttccagactgagctctgggtgtcacatgcatgcagctgttcacaacccag
ctgagggcctctgggctgtcacttctcaggctgtgattcccccaccccaa
ataggatcaaaaatgttttagaccagtggtatcatgttaccactagacag
gacttaggcaattgtaaaggacataaagctgctacaccaaggaggacctc
agtacctgtgaagcaggccaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_90271661_90272582
seq2: B6Ng01-053K09.b_40_963 (reverse)

seq1  TGTTCCCAGAGGGCTGAGCAGGCAGCTTTCCTCTGAGGGCCACACCCCTG  50
      |||||||| ||   ||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCAAAGAAGTGAGCAGGCAGCTTTCCTCTGAGGGCCACACCCCTG  50

seq1  CCTCCTGGGACCCTTCCAGAAGTCTAGAGAATGTCTGCATCTGCGGAGAT  100
      |||||||||||| | |||||||||||||||||||||||||||||||||||
seq2  CCTCCTGGGACCTTCCCAGAAGTCTAGAGAATGTCTGCATCTGCGGAGAT  100

seq1  TTCTGGT-AGGGCTGTAGCGCCTCCCTCAGGCTGCTCCAATCTTAACCAA  149
       || ||| ||| ||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGTAAGGACTGTAGCGCCTCCCTCAGGCTGCTCCAATCTTAACCAA  150

seq1  GGAGCTGAGACGCGGCTGATTCTGGGCTTTTCCAGATGCTGAATGGGAAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGAGACGCGGCTGATTCTGGGCTTTTCCAGATGCTGAATGGGAAG  200

seq1  AATACG-AACCCTGGCAGGAGAATGGGAGGGAGGACTGACCCTCGAGGTC  248
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AATACGAAACCCTGGCAGGAGAATGGGAGGGAGGACTGACCCTCGAGGTC  250

seq1  CCAGAAACCAGCATTATACCTGGGTGCTGAAGGAGGAGAATTACTTCCTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAACCAGCATTATACCTGGGTGCTGAAGGAGGAGAATTACTTCCTT  300

seq1  CAGAACTGGGTGGACATTACTTGGGCAAATGCTCAGGGACCAGAGAGGAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTGGGTGGACATTACTTGGGCAAATGCTCAGGGACCAGAGAGGAA  350

seq1  ACTGAAGACTTGGCTAAAGGCTCTGAGAACAGTGCTCCATACCTGTGAGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGACTTGGCTAAAGGCTCTGAGAACAGTGCTCCATACCTGTGAGA  400

seq1  TGCTCTTTCAGGTCCCTCAGGGGTCCCTAGAGGCAACCTGTTCCCTAAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTTCAGGTCCCTCAGGGGTCCCTAGAGGCAACCTGTTCCCTAAAA  450

seq1  AGAAGTAAGAATGCTGTCCTCAACTGCTAATGTGGGAGCGCGGCAAAACG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAAGAATGCTGTCCTCAACTGCTAATGTGGGAGCGCGGCAAAACG  500

seq1  TGAGTTCTCAGGACCCCCTTTTCTGTATGGACGAGAATCAAGAGTAGCAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCTCAGGACCCCCTTTTCTGTATGGACGAGAATCAAGAGTAGCAA  550

seq1  GTTTACTCCTATATGTTGTGCTTGGTAGTTCTTAGACCCAAGGCTAGTGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTCCTATATGTTGTGCTTGGTAGTTCTTAGACCCAAGGCTAGTGC  600

seq1  AGCCTTTCTTTATTAAACAATCCTGCATGGCCGGGCTTGGTGGCACACGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTCTTTATTAAACAATCCTGCATGGCCGGGCTTGGTGGCACACGC  650

seq1  CTTTAATCCCACACGCCTTTAATCCCAGGAGGCAGAGGCAGGTGGATTTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCCCACACGCCTTTAATCCCAGGAGGCAGAGGCAGGTGGATTTC  700

seq1  TGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAAGACAGCCAGGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAAGACAGCCAGGG  750

seq1  CTACACAGAGAAACCCTGTCTCAAAAAAAACCAAACAAAACAAAAACAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAGAGAAACCCTGTCTCAAAAAAAACCAAACAAAACAAAAACAAA  800

seq1  AACAAACAAAAAACCAATCCTGCATGATCCTTTGTTGCCTCCCACCCCTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAAAAACCAATCCTGCATGATCCTTTGTTGCCTCCCACCCCTG  850

seq1  ATCCCCTCCTGCCTCTTCTTCTCTTTCCATTAGAAAGTTTGTTGAAAAAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTCCTGCCTCTTCTTCTCTTTCCATTAGAAAGTTTGTTGAAAAAC  900

seq1  CCTTACCCAGCAGCCTGGGAATTC  922
      ||||||||||||||||||||||||
seq2  CCTTACCCAGCAGCCTGGGAATTC  924

seq1: chr8_90117629_90118674
seq2: B6Ng01-053K09.g_69_1090

seq1  GAATTCCTGGAAACCCTTGGGCCAGTTAACAGCAAAAGAGACCCTGTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGAAACCCTTGGGCCAGTTAACAGCAAAAGAGACCCTGTCCA  50

seq1  AGCAACATGGAAGATGAAAAGTCAGGGTTCTCCTCTGACCTCCACACTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACATGGAAGATGAAAAGTCAGGGTTCTCCTCTGACCTCCACACTCA  100

seq1  TACTGTGGCAAGCCCACCATTGACAACAGCCCCCTCCCCACACACACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGGCAAGCCCACCATTGACAACAGCCCCCTCCCCACACACACACA  150

seq1  CCACAGTTAAACCGTGTGTGGAGGTGTACATCTGTCACCTCAGCATCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTTAAACCGTGTGTGGAGGTGTACATCTGTCACCTCAGCATCAGG  200

seq1  GTGACTAAGATGAGTTTAAGGCCAACCTGGGTTACACAGGTAGACCAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTAAGATGAGTTTAAGGCCAACCTGGGTTACACAGGTAGACCAGAT  250

seq1  CTCAAGTAGAAGCTAAGAAAAATACAAATAAAACAGTTATACTCAGACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTAGAAGCTAAGAAAAATACAAATAAAACAGTTATACTCAGACTT  300

seq1  TTGGTAACAATGTTCTGGTTTTCTGTTTGAAAAACAAAAGCCTCAGCCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAACAATGTTCTGGTTTTCTGTTTGAAAAACAAAAGCCTCAGCCGG  350

seq1  GCGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGC  400

seq1  GGGTTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACA  450

seq1  ACCAGGGCTACACAGAGAAACCCTGTCTCAAAAAACCAAAAAAAAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGCTACACAGAGAAACCCTGTCTCAAAAAACCAAAAAAAAAAAAA  500

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  550

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGGAAAGAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGGAAAGAAAGA  600

seq1  GAAGAAAAACAAAAGCCTCAACCTTAAAGGTGGTCTTCCTTCCTACCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAAACAAAAGCCTCAACCTTAAAGGTGGTCTTCCTTCCTACCTGT  650

seq1  CTTCCCTCCTCTTCTTCCCTCCCAAGCATTTTCCCTCTAGAGGCCACCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTCCTCTTCTTCCCTCCCAAGCATTTTCCCTCTAGAGGCCACCAG  700

seq1  GTGGCGCTCGATCCCAGCAGAAGATGCTCTGCTCAAGGCACCCACAGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCGCTCGATCCCAGCAGAAGATGCTCTGCTCAAGGCACCCACAGATG  750

seq1  TCCACTCAGCTGCTAACCTAGCTGTAGGCCCATCCAAAGGTGGCAGGACA  800
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCCACTCAGCTGCTAACCTAGCTGTAAGCCCATCCAAAGGTGGCAGGACA  800

seq1  TTCCAGACTGAGCTCTGGGTGTCACATGCATGCAGCTGTTCACAACCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGACTGAGCTCTGGGTGTCACATGCATGCAGCTGTTCACAACCCAG  850

seq1  CTGAGGGCCTCTGGGCATGTCACTTCCTCAAGGCTGTGATTCCCCCCAAC  900
      |||||||||||||||| |||||||| ||| ||||||||||||||||  ||
seq2  CTGAGGGCCTCTGGGC-TGTCACTT-CTC-AGGCTGTGATTCCCCC--AC  895

seq1  CCCCAAAATAGGATCAAAAAATGTATTTCAGACCAAGGTGGTATCCATGT  950
      |||  |||||||||||||||   | ||| ||||||  ||||||| |||||
seq2  CCC--AAATAGGATCAAAAA---TGTTTTAGACCA--GTGGTAT-CATGT  937

seq1  ATACCAACTAGACAGGACTTAAGGCAAATTGAAAAGGACATTAAAGCTGC  1000
       |||| |||||||||||||| |||| ||||| |||||||| |||||||||
seq2  -TACC-ACTAGACAGGACTT-AGGC-AATTGTAAAGGACA-TAAAGCTGC  982

seq1  TAACACCAAAGGAGGGGCCCTCAGTACCTTGTGACAGCAGGGCACA  1046
      | ||||| |||||  || |||||||||| ||||| |||||| ||||
seq2  T-ACACC-AAGGA--GGACCTCAGTACC-TGTGA-AGCAGGCCACA  1022