BAC Information

Click to search

BAC

Clone NameB6Ng01-054I20
Chromosome8 (Build37)
Map Location 120,022,844 - 120,149,134
singlet/doubletdoublet
Overlap genePlcg2
Upstream geneLOC668233, Dynlrb2, Cdyl2, LOC100043053, 2310061C15Rik, 2610510J17Rik, BC060631, 1700030J22Rik, Gcsh, Pkd1l2, Bcmo1, Gan, 4933407C03Rik
Downstream gene4632417N05Rik, Hsd17b2, Mphosph6, Cdh13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054I20.bB6Ng01-054I20.g
ACCDH877267DH877268
length1,063571
definitionDH877267|Mus musculus domesticus DNA, BAC clone: B6Ng01-054I20, 5' end.DH877268|Mus musculus domesticus DNA, BAC clone: B6Ng01-054I20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,022,844 - 120,023,905)(120,148,559 - 120,149,134)
sequence
agggaaggtgggttgtatccggacctaggaggttgatacctggaaagtca
ggagcaggccctgtccgtaccctgatctcgaactgttgagagagaggctg
gcagggcgaggggccgacacgccctggaaacaggtggctttctctctgag
acctaaatttgaatttcagttccatttatgtgacacagcacacagagagg
agcccccccacccccaccccccgagtccaggtttctctcttgggtcccgt
actagaccagagcctgttttccggggcatcaaagagactccctgcagttc
ctgaccctggtggcaaaggcccttcctggtgggcacaggtcatggcccct
gctctttgcttctgcgggacacttacaggatgttggggtcgggactagcc
ctaggctgttacccattttgcacggttgtgggcagcagtgtagcagtccc
aggggattttggctgtggatttttattgatgcttaaaattactcggtgct
tggcctcccaggcaaggcggcgtgtgtggggtactctgaaggagccccag
cggggacccttttgcacctcctgggcgaagttggtgggaagttactggtg
ggaaaacttctgcaaataattaatttcgaaaataggcaaccctctccctg
ccctgtctccgcaaaagggcttttctgtttcaactaacagagtggaccca
ttcatatgtcttgtcccatcctctctcattggccccctctagatttacaa
gcaatgctttcgagatatatatatatatatatatcactaataacatttat
attataactcattaatttgtaagtttctttttttttaaatcaaaatagct
cacaaatctcccaagatcaaaattggcgtgtgataatttataaatccact
cttttccgtagcttctgtacattttaaatttttaaaatatttttgagaca
atctcattatatagtcaggttagccttgaacttctgatcttcctgtgtcc
acctcccaagtgctgggaagatcaagtgtggtgccaatactcttggccct
gtaggggaatgcc
acagacatgtgctagcccctgcctcctgagtgctagagttgaaggtatgt
gccaccatgcctggctataaatgcagcaattttcactccctggattacca
caatggctgtaaaaggcgtctcccagtcctgccactcctgccccattgga
aagctctcagctatgttccaggaactgacaatcaagaaactgccaacatg
ttaattcttacagcccaaagaagaccacaggccaacagttcccctaccag
aaaacacaatgaggtccaatagcaagatcatcatatggcagcacactggg
ggccacaattggcttaggtttcccaatgggaaatgagtggggggggggta
ataaaattccctgactcgtggcaagctttctgaggttttggtagaagaat
gaagggtcatggaaaaatgaattatctgcatgccaggcattgcaataaga
gcacttgcacaatcgtgttcattgctgcttcataatagacagaaattgaa
aacagcctaaatgtccatcaacgggtgaatggataatgtattacatttgc
tcaatgcaatattactcagcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_120022844_120023905
seq2: B6Ng01-054I20.b_55_1117

seq1  AGGGAAGGTGGGTTGTATCCGGACCTAGGAGGTTGATACCTGGAAAGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGGTGGGTTGTATCCGGACCTAGGAGGTTGATACCTGGAAAGTCA  50

seq1  GGAGCAGGCCCTGTCCGTACCCTGATCTCGAACTGTTGAGAGAGAGGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGGCCCTGTCCGTACCCTGATCTCGAACTGTTGAGAGAGAGGCTG  100

seq1  GCAGGGCGAGGGGCCGACACGCCCTGGAAACAGGTGGCTTTCTCTCTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCGAGGGGCCGACACGCCCTGGAAACAGGTGGCTTTCTCTCTGAG  150

seq1  ACCTAAATTTGAATTTCAGTTCCATTTATGTGACACAGCACACAGAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAATTTGAATTTCAGTTCCATTTATGTGACACAGCACACAGAGAGG  200

seq1  AGCCCCCCCACCCCCACCCCCCGAGTCCAGGTTTCTCTCTTGGGTCCCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCCCCACCCCCACCCCCCGAGTCCAGGTTTCTCTCTTGGGTCCCGT  250

seq1  ACTAGACCAGAGCCTGTTTTCCGGGGCATCAAAGAGACTCCCTGCAGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGACCAGAGCCTGTTTTCCGGGGCATCAAAGAGACTCCCTGCAGTTC  300

seq1  CTGACCCTGGTGGCAAAGGCCCTTCCTGGTGGGCACAGGTCATGGCCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCTGGTGGCAAAGGCCCTTCCTGGTGGGCACAGGTCATGGCCCCT  350

seq1  GCTCTTTGCTTCTGCGGGACACTTACAGGATGTTGGGGTCGGGACTAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTGCTTCTGCGGGACACTTACAGGATGTTGGGGTCGGGACTAGCC  400

seq1  CTAGGCTGTTACCCATTTTGCACGGTTGTGGGCAGCAGTGTAGCAGTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTGTTACCCATTTTGCACGGTTGTGGGCAGCAGTGTAGCAGTCCC  450

seq1  AGGGGATTTTGGCTGTGGATTTTTATTGATGCTTAAAATTACTCGGTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGATTTTGGCTGTGGATTTTTATTGATGCTTAAAATTACTCGGTGCT  500

seq1  TGGCCTCCCAGGCAAGGCGGCGTGTGTGGGGTACTCTGAAGGAGCCCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCCCAGGCAAGGCGGCGTGTGTGGGGTACTCTGAAGGAGCCCCAG  550

seq1  CGGGGACCCTTTTGCACCTCCTGGGCGAAGTTGGTGGGAAGTTACTGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGACCCTTTTGCACCTCCTGGGCGAAGTTGGTGGGAAGTTACTGGTG  600

seq1  GGAAAACTTCTGCAAATAATTAATTTCGAAAATAGGCAACCCTCTCCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACTTCTGCAAATAATTAATTTCGAAAATAGGCAACCCTCTCCCTG  650

seq1  CCCTGTCTCCGCAAAAGGGCTTTTCTGTTTCAACTAACAGAGTGGACCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCTCCGCAAAAGGGCTTTTCTGTTTCAACTAACAGAGTGGACCCA  700

seq1  TTCATATGTCTTGTCCCATCCTCTCTCATTGGCCCCCTCTAGATTTACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATGTCTTGTCCCATCCTCTCTCATTGGCCCCCTCTAGATTTACAA  750

seq1  GCAATGCTTTCGAGATATATATATATATATATATCACTAATAACATTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGCTTTCGAGATATATATATATATATATATCACTAATAACATTTAT  800

seq1  ATTATAACTCATTAATTTGTAAGTTTCTTTTTTTTTAAATCAAAATAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAACTCATTAATTTGTAAGTTTCTTTTTTTTTAAATCAAAATAGCT  850

seq1  CACAAATCTCCCAAGATCAAAATTGGCGTGTGATAATTTATAAATCCACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATCTCCCAAGATCAAAATTGGCGTGTGATAATTTATAAATCCACT  900

seq1  CTTTTCCGTAGCTTCTGTACATTTTAAATTTTTTAAAATTATTTTTGAGA  950
      |||||||||||||||||||||||||||||||||  ||| |||||||||||
seq2  CTTTTCCGTAGCTTCTGTACATTTTAAATTTTT--AAAATATTTTTGAGA  948

seq1  CAATCTCATTATATAGTTCAGGTTAGCCTTGAACTTCTGATCTTCCTGTG  1000
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CAATCTCATTATATAG-TCAGGTTAGCCTTGAACTTCTGATCTTCCTGTG  997

seq1  TCCACCTCCCAAGTGCTGGGATGATC-AGTGT-GTGCCAATACTCTTGG-  1047
      ||||||||||||||||||||| |||| ||||| |||||||||||||||| 
seq2  TCCACCTCCCAAGTGCTGGGAAGATCAAGTGTGGTGCCAATACTCTTGGC  1047

seq1  CCTGTAGGGG-ATGCC  1062
      |||||||||| |||||
seq2  CCTGTAGGGGAATGCC  1063

seq1: chr8_120148559_120149134
seq2: B6Ng01-054I20.g_63_638 (reverse)

seq1  GCTGAGTAATATTGCATTGTGCAAATGTAATACATTATCCATTCACCCGT  50
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCTGAGTAATATTGCATTGAGCAAATGTAATACATTATCCATTCACCCGT  50

seq1  TGATGGACATTTAGGCTGTTTTCAATTTCTGTCTATTATGAAGCAGCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGACATTTAGGCTGTTTTCAATTTCTGTCTATTATGAAGCAGCAAT  100

seq1  GAACACGATTGTGCAAGTGCTCTTATTGCAATGCCTGGCATGCAGATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACGATTGTGCAAGTGCTCTTATTGCAATGCCTGGCATGCAGATAAT  150

seq1  TCATTTTTCCATGACCCTTCATTCTTCTACCAAAACCTCAGAAAGCTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTCCATGACCCTTCATTCTTCTACCAAAACCTCAGAAAGCTTGC  200

seq1  CACGAGTCAGGGAATTTTATTACCCCCCCCCCACTCATTTCCCATTGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGTCAGGGAATTTTATTACCCCCCCCCCACTCATTTCCCATTGGGA  250

seq1  AACCTAAGCCAATTGTGGCCCCCAGTGTGCTGCCATATGATGATCTTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAAGCCAATTGTGGCCCCCAGTGTGCTGCCATATGATGATCTTGCT  300

seq1  ATTGGACCTCATTGTGTTTTCTGGTAGGGGAACTGTTGGCCTGTGGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGACCTCATTGTGTTTTCTGGTAGGGGAACTGTTGGCCTGTGGTCTT  350

seq1  CTTTGGGCTGTAAGAATTAACATGTTGGCAGTTTCTTGATTGTCAGTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGCTGTAAGAATTAACATGTTGGCAGTTTCTTGATTGTCAGTTCC  400

seq1  TGGAACATAGCTGAGAGCTTTCCAATGGGGCAGGAGTGGCAGGACTGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACATAGCTGAGAGCTTTCCAATGGGGCAGGAGTGGCAGGACTGGGA  450

seq1  GACGCCTTTTACAGCCATTGTGGTAATCCAGGGAGTGAAAATTGCTGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCCTTTTACAGCCATTGTGGTAATCCAGGGAGTGAAAATTGCTGCAT  500

seq1  TTATAGCCAGGCATGGTGGCACATACCTTCAACTCTAGCACTCAGGAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCCAGGCATGGTGGCACATACCTTCAACTCTAGCACTCAGGAGGC  550

seq1  AGGGGCTAGCACATGTCTGTGAATTC  576
      ||||||||||||||||||||||||||
seq2  AGGGGCTAGCACATGTCTGTGAATTC  576