BAC Information

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BAC

Clone NameB6Ng01-055C13
Chromosome8 (Build37)
Map Location 124,364,671 - 124,459,118
singlet/doubletdoublet
Overlap geneSlc7a5, BC048644, Car5a
Upstream geneLOC100042333, Foxf1a, Mthfsd, Foxc2, Foxl1, 1700018B08Rik, Fbxo31, Map1lc3b, Zcchc14, Jph3, Klhdc4
Downstream geneBanp, Gm22, Zfpm1, Trhr2, 5830416A07Rik, Il17c, Cyba, Mvd, Snai3, Rnf166, 2310061F22Rik, Cdt1, Aprt, Galns, Trappc2l, Pabpnl1, Cbfa2t3h, C230057M02Rik, A530010L16Rik, BC021611, LOC100043225, Cdh15, Ankrd11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055C13.bB6Ng01-055C13.g
ACCDH877698DH877699
length1,1161,128
definitionDH877698|Mus musculus domesticus DNA, BAC clone: B6Ng01-055C13, 5' end.DH877699|Mus musculus domesticus DNA, BAC clone: B6Ng01-055C13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,457,996 - 124,459,118)(124,364,671 - 124,365,321)
sequence
gaattccacacaggaagggaaaggctgaatcctggcatcagcctcccccc
aaactctccccctccccccctgtagagagatgagctgagacagtggaagg
tcactgctgggtaggtcacagagtctctgcatatttatactctttgcata
tttaaacccaagcctcctgtcaggtcccaagggtggttgttggcaacact
gaaaacagttcctttctctgtatgatctgtgaaaatatctttaagtggga
ttttagggaggaggggctgagcctagcttgctgggggctgccagagcccc
caggctttgcctgtaaaacttccccgaatattttcacagtccaccatggc
ctctgctcctctaggtgacaactgacagtcgccaccaaagccaagagatc
ccaaaggagcccaagtccaaaactgctgctgctggccaccacaggcctga
ctcccagggtcagcttgtaaacttagagctctcagattttacttctgtcc
accaggggtcaccagttgcaggtcagagaaaggccctgcctgacaaaaca
aaccaagaggaagcaccagacaaatggaggctcctgcctggacaggtgac
ctggaaatgaggcaaggagagcagcagccaggcctccttcctcatttttc
tggtctctaccgtgtctctcaacagaccccaagctccaagatagccctcc
acggtcatagctaagtgggatgccttctagggcatctccattagagagaa
aggctccagggatggatccctgagcctgaccaggaaggtgtagattggtg
aattcaagatgtttcataaagccaaggagagacaagtactcagaagagct
tcttctaggggatgctggctcccttctttcttccttccatcttttttctt
tgtctttcttggtcttttgactaggactcactgaaaccaactgggagtca
ctatgaagactccaaactcaaaatgtccttctgctcagtctctgagacct
gggatggcagtggtgtgccaccaggcttgctctgatgcacaatttttctg
aagaagttgtctgcattgtccttacgaatgtcctgccttgggaaagcaag
gtctgttcaggtctgt
gaattcagtctttgagggatgctgtcaatgaagacctagcgacaatagag
aagtccatagacgctttaaaaaaatctttgacctccctgtctgaggtagt
tttacagaacaggagaggtcttgatttgttgttcctaaaggaaggaagac
tgtgtgctgcccttaaagaagagtgctgcttctatgcagatcatacagga
atagttagagactctatgcagaaactgagagaaagattagagcgaaggaa
acgggaacgggatgctcaacgggggtggtttgagtcgtggtttgaatcac
gaccatcttggataacttctttaatttccgctgtagccggaccaatcctt
atgatatgcttagctttagttttcggcccttgtataataaatagaggaat
ggctttcatccagagtaaaattgatacagtaaaactcatggttcttcaaa
ggcaatatcaacctatagttcaggtagatgaagagttaagggacaccgac
ctctaaaattctatgattagaattagtctaaacagaaaaagaggggaatg
aaaggaaataaaactgtaattcatgtaatgtatgttaaatagcccaaaga
gttgtttctgagctttgaaacctggggctgagaacatagcagaacagacc
aggacatgcccgggcaagcccatcgcctccctagctcccacccctctgac
ctaagttaaatgttacaggctgctgatgtttaaatggaccaatcatgtga
aaccgcgccaattcctcccccagccccactccttttctataaaaccccct
agcttccaagcctcgtggtcgaatccactgtctcctgttgtgtgagatac
gtttcgacccggagctccgccattaaaaacctcttgttgttacatcaagg
tgttgtgttctattcgtgattcttgggtgcacgccgattcgggagctgag
tgggggtttccccactgagttctttcaatgggaaggctgagtcgcttcat
ttaactggaaggtctacagcgttgaggcatcatttaaggcacagagcaca
tctagaaagcaaggcttcttccatccgacgataacatatgaagacatcgg
ccaagaaaccagtagaaaggggggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_124457996_124459118
seq2: B6Ng01-055C13.b_46_1161 (reverse)

seq1  ACAGCACCTGAAACAGACACTGCTTCTCCCAGGGCAGGACCTTTCTGTAA  50
      |||| ||||| |||||||  ||||| ||||| |||||||| ||   ||||
seq2  ACAG-ACCTG-AACAGACCTTGCTT-TCCCAAGGCAGGACATT--CGTAA  45

seq1  GGACATTGGCAGAC-ACGTCTTCAGAAAAATCGTGCATCAAGAGCCAGGC  99
      ||||| | |||||| || ||||||||||||| ||||||| |||| || ||
seq2  GGACAAT-GCAGACAACTTCTTCAGAAAAATTGTGCATC-AGAG-CAAGC  92

seq1  CTGGTGGCACACACCTGCCATCCCAGGTCTCAGGAGACTGAGGCAG-AGG  148
      ||||||||||||  |||||||||||||||||| |||||||| |||| |||
seq2  CTGGTGGCACACCACTGCCATCCCAGGTCTCA-GAGACTGA-GCAGAAGG  140

seq1  ACATTTTGAGTTTTGAGTC-TCATAGTGACTCCCAGTTGGTTTCAGTGAG  197
      ||||||||||||| ||||| ||||||||||||||||||||||||||||||
seq2  ACATTTTGAGTTTGGAGTCTTCATAGTGACTCCCAGTTGGTTTCAGTGAG  190

seq1  TCCTAGTCAAAAGACCAAGAAAGACAAAGAAAAAAAGATGGAAGGAAGAA  247
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCCTAGTCAAAAGACCAAGAAAGACAAAG-AAAAAAGATGGAAGGAAGAA  239

seq1  AGAAGGGAGCCAGCATCCCCTAGAAGAGGCTCTTCTGAGTACTTGTCTCT  297
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGAAGGGAGCCAGCATCCCCTAGAAGAAGCTCTTCTGAGTACTTGTCTCT  289

seq1  CCTTGGCTTTATGAAACATCTTGAATTCACCAATCTACACCTTCCTGGTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGCTTTATGAAACATCTTGAATTCACCAATCTACACCTTCCTGGTC  339

seq1  AGGCTCAGGGATCCATCCCTGGAGCC-TTCTCTCTAATGGAGATGCCCTA  396
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGGCTCAGGGATCCATCCCTGGAGCCTTTCTCTCTAATGGAGATGCCCTA  389

seq1  GAAGGCATCCCACTTAGCTATGACCGTGGAGGGCTATCTTGGAGCTTGGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCATCCCACTTAGCTATGACCGTGGAGGGCTATCTTGGAGCTTGGG  439

seq1  GTCTGTTGAGAGACACGGTAGAGACCAGAAAAATGAGGAAGGAGGCCTGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTGAGAGACACGGTAGAGACCAGAAAAATGAGGAAGGAGGCCTGG  489

seq1  CTGCTGCTCTCCTTGCCTCATTTCCAGGTCACCTGTCCAGGCAGGAGCCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCTCTCCTTGCCTCATTTCCAGGTCACCTGTCCAGGCAGGAGCCT  539

seq1  CCATTTGTCTGGTGCTTCCTCTTGGTTTGTTTTGTCAGGCAGGGCCTTTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGTCTGGTGCTTCCTCTTGGTTTGTTTTGTCAGGCAGGGCCTTTC  589

seq1  TCTGACCTGCAACTGGTGACCCCTGGTGGACAGAAGTAAAATCTGAGAGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCTGCAACTGGTGACCCCTGGTGGACAGAAGTAAAATCTGAGAGC  639

seq1  TCTAAGTTTACAAGCTGACCCTGGGAGTCAGGCCTGTGGTGGCCAGCAGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTTTACAAGCTGACCCTGGGAGTCAGGCCTGTGGTGGCCAGCAGC  689

seq1  AGCAGTTTTGGACTTGGGCTCCTTTGGGATCTCTTGGCTTTGGTGGCGAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTTTGGACTTGGGCTCCTTTGGGATCTCTTGGCTTTGGTGGCGAC  739

seq1  TGTCAGTTGTCACCTAGAGGAGCAGAGGCCATGGTGGACTGTGAAAATAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTTGTCACCTAGAGGAGCAGAGGCCATGGTGGACTGTGAAAATAT  789

seq1  TCGGGGAAGTTTTACAGGCAAAGCCTGGGGGCTCTGGCAGCCCCCAGCAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGGAAGTTTTACAGGCAAAGCCTGGGGGCTCTGGCAGCCCCCAGCAA  839

seq1  GCTAGGCTCAGCCCCTCCTCCCTAAAATCCCACTTAAAGATATTTTCACA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGCTCAGCCCCTCCTCCCTAAAATCCCACTTAAAGATATTTTCACA  889

seq1  GATCATACAGAGAAAGGAACTGTTTTCAGTGTTGCCAACAACCACCCTTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATACAGAGAAAGGAACTGTTTTCAGTGTTGCCAACAACCACCCTTG  939

seq1  GGACCTGACAGGAGGCTTGGGTTTAAATATGCAAAGAGTATAAATATGCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTGACAGGAGGCTTGGGTTTAAATATGCAAAGAGTATAAATATGCA  989

seq1  GAGACTCTGTGACCTACCCAGCAGTGACCTTCCACTGTCTCAGCTCATCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCTGTGACCTACCCAGCAGTGACCTTCCACTGTCTCAGCTCATCT  1039

seq1  CTCTACAGGGGGGGAGGGGGAGAGTTTGGGGGGAGGCTGATGCCAGGATT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACAGGGGGGGAGGGGGAGAGTTTGGGGGGAGGCTGATGCCAGGATT  1089

seq1  CAGCCTTTCCCTTCCTGTGTGGAATTC  1123
      |||||||||||||||||||||||||||
seq2  CAGCCTTTCCCTTCCTGTGTGGAATTC  1116

seq1: chr8_124364671_124365321
seq2: B6Ng01-055C13.g_553_1196

seq1  GTTAAGGGACACCGACCTCTAAAATTCTATGATTAGAATTAGTCTAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGGGACACCGACCTCTAAAATTCTATGATTAGAATTAGTCTAAACA  50

seq1  GAAAAAGAGGGGAATGAAAGGAAATAAAACTGTAATTCATGTAATGTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGAGGGGAATGAAAGGAAATAAAACTGTAATTCATGTAATGTATG  100

seq1  TTAAATAGCCCAAAGAGTTGTTTCTGAGCTTTGAAACCTGGGGCTGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAGCCCAAAGAGTTGTTTCTGAGCTTTGAAACCTGGGGCTGAGAA  150

seq1  CATAGCAGAACAGACCAGGACATGCCCGGGCAAGCCCATCGCCTCCCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCAGAACAGACCAGGACATGCCCGGGCAAGCCCATCGCCTCCCTAG  200

seq1  CTCCCACCCCTCTGACCTAAGTTAAATGTTACAGGCTGCTGATGTTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACCCCTCTGACCTAAGTTAAATGTTACAGGCTGCTGATGTTTAAA  250

seq1  TGGACCAATCATGTGAAACCGCGCCAATTCCTCCCCCAGCCCCACTCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCAATCATGTGAAACCGCGCCAATTCCTCCCCCAGCCCCACTCCTT  300

seq1  TTCTATAAAACCCCCTAGCTTCCAAGCCTCGTGGTCGAATCCACTGTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATAAAACCCCCTAGCTTCCAAGCCTCGTGGTCGAATCCACTGTCTC  350

seq1  CTGTTGTGTGAGATACGTTTCGACCCGGAGCTCCGCCATTAAAAAACCTC  400
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTGTTGTGTGAGATACGTTTCGACCCGGAGCTCCGCCATT-AAAAACCTC  399

seq1  TTGTTGTTACATCAAGGTGTTGTGTTCTATTCGTGATTCTTGGGTGCACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTACATCAAGGTGTTGTGTTCTATTCGTGATTCTTGGGTGCACG  449

seq1  CCGAATCGGGAGCTGAGTGGGGGTTTCCCCACTGAGTTCTTTCAATTGGA  500
      |||| ||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCGATTCGGGAGCTGAGTGGGGGTTTCCCCACTGAGTTCTTTCAATGGGA  499

seq1  AGGCTGAGTCGCTTCATTTAACTGGAAGTTCTACAGCG-TGAGGCATCAT  549
      |||||||||||||||||||||||||||| ||||||||| |||||||||||
seq2  AGGCTGAGTCGCTTCATTTAACTGGAAGGTCTACAGCGTTGAGGCATCAT  549

seq1  TTTAGGCCACAGGAGGCACA-CCAGAGAGCAGGCTTTCTTCTATCCAGAC  598
      || ||| |||||   ||||| | ||| |||| |  |||||| |||| |||
seq2  TTAAGG-CACAG--AGCACATCTAGAAAGCAAGGCTTCTTCCATCC-GAC  595

seq1  AGATAAACATATGAAGACATCGGCCAAAGGAACCAAGTAAGAAAGGGGGT  648
       ||| ||||||||||||||||||||||  ||| | ||||  || ||||||
seq2  -GAT-AACATATGAAGACATCGGCCAA--GAAACCAGTAGAAAGGGGGGT  641

seq1  GGG  651
      |||
seq2  GGG  644