BAC Information

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BAC

Clone NameB6Ng01-056L02
Chromosome8 (Build37)
Map Location 108,512,463 - 108,658,576
singlet/doubletdoublet
Overlap geneDpep2, Ddx28, Dus2l, Nfatc3, Rbm35b
Upstream geneLOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3
Downstream geneLypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056L02.bB6Ng01-056L02.g
ACCDH878772DH878773
length1,004867
definitionDH878772|Mus musculus domesticus DNA, BAC clone: B6Ng01-056L02, 5' end.DH878773|Mus musculus domesticus DNA, BAC clone: B6Ng01-056L02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,512,463 - 108,513,465)(108,657,713 - 108,658,576)
sequence
gaattctcttcttctcgtgcgaatccataatctatcactggttgacagaa
aggggttcaatgagaagatgggggttcaggtcttaagttaggttccaggg
ctaggaaatctctcaccagaagctgcaggaggtcatcaggaagattccga
gcatttgggcacacagccctggcagcggagtgggagaaaatcacaggggc
ttgggatacttccaaggcccgcctggctgcagcatccgagacgtgggaca
gatcaaccatcatacctaagcgattcatttctgccaccaccttctgcagg
gacaggttaaggaggagggtgtcggggctacacgtatgcacacatttacc
tttcaggaaagggggtgtgtgtttgtgcggagttcttacctcaccaaagc
tggtcagtccagtgacactgctgtagaatgcgtggacacccttggatgag
gtctctgccctgaaggacaagcatggggcaaactaactgatggtcacacc
cctccaaacactacccctgcaatcccacagagctggttcacagacccagg
ttggcaaaaggaggaatcccagtctggctcttatcaaagccctgtgtgcg
agtctcgggaatctacgagggcaaaccttggtctttgtccacaagggcag
attcccgctttggaggtctctgtgcttaccagggtgtgttgcaggtgtgt
gtgagcgtcaggtagcgcacccccagcaggtagaaacttcgaagcacagc
gaggctgttgtctagtgaatggccaccttccacaccaatgaggcaagcca
atttctgggtgctgttcagagctgtaggcgtaggtcaggtgattattttc
aggagctatacagtagcttcatccattcccccataccctgaataaatcca
cttacttttaactgaagtcacaagttccagctcagaataagaggcacata
tttctgcgaatgaggtctatctgcctccagaagtgagacgcgggcatccc
ggtc
gaattccatatgcagcacccaagcacctgctccgccagagacctcacagt
gggcaccatggcacagggtatctgtgacccatcaaaattaaggtggaggg
gtgactaatatgtccaagcatgtgcatgatgccgtatgggctgtatgaat
gtagacaggtctatgtttttagcctcattctttgggatacatttggaatg
tggacatgtctgtgtttggtctgaggacctgtaggtacatgtatgaactg
ggccacaactagtgtttgctaggattctctgggtgtttcggggtgacgtg
ggatgtacagacctggacctcagttgtcacttctctgcctatagacttgg
gactagaaacagatgctaccgaagatgactttggggtctgggaagtgaag
actatggtagctgttattctccacctacttgaagggtccaatggtaagat
tcttgccctgcttgccagctactgtcaggactgggtgagtgcccatccct
tcaacagagtccccttgctgacttgtgaccttctctaagagaacacaagg
tagaaacccctctgccgcgtcctcaatgccctcaccggtcctatttttgc
tgagcttggtggagagacttcctccaccagaccctgctgacccccatgcc
atctcctctcaggtcagttgttctcgaagccagaagtggtaaagcagaaa
atacgagacaggcccttggttgagtgtaggagctgggatgggggtgacaa
tccttggacatttttgatcctttgccctgccccccacagcatcaggctga
tgtggtggacaattgagattgaagtacgggcccgtgggttgccctggcca
atcatcagaccaggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_108512463_108513465
seq2: B6Ng01-056L02.b_47_1050

seq1  GAATTCTCTTCTTCTCGTGCGAATCCATAATCTATCACTGGTTGACAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCTTCTCGTGCGAATCCATAATCTATCACTGGTTGACAGAA  50

seq1  AGGGGTTCAATGAGAAGATGGGGGTTCAGGTCTTAAGTTAGGTTCCAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTCAATGAGAAGATGGGGGTTCAGGTCTTAAGTTAGGTTCCAGGG  100

seq1  CTAGGAAATCTCTCACCAGAAGCTGCAGGAGGTCATCAGGAAGATTCCGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAAATCTCTCACCAGAAGCTGCAGGAGGTCATCAGGAAGATTCCGA  150

seq1  GCATTTGGGCACACAGCCCTGGCAGCGGAGTGGGAGAAAATCACAGGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGGGCACACAGCCCTGGCAGCGGAGTGGGAGAAAATCACAGGGGC  200

seq1  TTGGGATACTTCCAAGGCCCGCCTGGCTGCAGCATCCGAGACGTGGGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATACTTCCAAGGCCCGCCTGGCTGCAGCATCCGAGACGTGGGACA  250

seq1  GATCAACCATCATACCTAAGCGATTCATTTCTGCCACCACCTTCTGCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAACCATCATACCTAAGCGATTCATTTCTGCCACCACCTTCTGCAGG  300

seq1  GACAGGTTAAGGAGGAGGGTGTCGGGGCTACACGTATGCACACATTTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTTAAGGAGGAGGGTGTCGGGGCTACACGTATGCACACATTTACC  350

seq1  TTTCAGGAAAGGGGGTGTGTGTTTGTGCGGAGTTCTTACCTCACCAAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGAAAGGGGGTGTGTGTTTGTGCGGAGTTCTTACCTCACCAAAGC  400

seq1  TGGTCAGTCCAGTGACACTGCTGTAGAATGCGTGGACACCCTTGGATGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGTCCAGTGACACTGCTGTAGAATGCGTGGACACCCTTGGATGAG  450

seq1  GTCTCTGCCCTGAAGGACAAGCATGGGGCAAACTAACTGATGGTCACACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGCCCTGAAGGACAAGCATGGGGCAAACTAACTGATGGTCACACC  500

seq1  CCTCCAAACACTACCCCTGCAATCCCACAGAGCTGGTTCACAGACCCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAACACTACCCCTGCAATCCCACAGAGCTGGTTCACAGACCCAGG  550

seq1  TTGGCAAAAGGAGGAATCCCAGTCTGGCTCTTATCAAAGCCCTGTGTGCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAAAAGGAGGAATCCCAGTCTGGCTCTTATCAAAGCCCTGTGTGCG  600

seq1  AGTCTCGGGAATCTACGAGGGCAAACCTTGGTCTTTGTCCACAAGGGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCGGGAATCTACGAGGGCAAACCTTGGTCTTTGTCCACAAGGGCAG  650

seq1  ATTCCCGCTTTGGAGGTCTCTGTGCTTACCAGGGTGTGTTGCAGGTGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCGCTTTGGAGGTCTCTGTGCTTACCAGGGTGTGTTGCAGGTGTGT  700

seq1  GTGAGCGTCAGGTAGCGCACCCCCAGCAGGTAGAAACTTCGAAGCACAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCGTCAGGTAGCGCACCCCCAGCAGGTAGAAACTTCGAAGCACAGC  750

seq1  GAGGCTGTTGTCTAGTGAATGGCCACCTTCCACACCAATGAGGCAAGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGTTGTCTAGTGAATGGCCACCTTCCACACCAATGAGGCAAGCCA  800

seq1  ATTTCTGGGTGCTGTTCAGAGCTGTAGGCGTAGGTCAGGTGATTATTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGGGTGCTGTTCAGAGCTGTAGGCGTAGGTCAGGTGATTATTTTC  850

seq1  AGGAGCTATACAGTAGCTTCATCCATTCCCCCAATACCCTGAATAAATCC  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGGAGCTATACAGTAGCTTCATCCATTCCCCC-ATACCCTGAATAAATCC  899

seq1  ACTTAACTTTAACTGAGGTCACAAGTTCCAGCTCAGAATAAGAGGCACAT  950
      |||||  ||||||||| |||||||||||||||||||||||||||||||||
seq2  ACTTACTTTTAACTGAAGTCACAAGTTCCAGCTCAGAATAAGAGGCACAT  949

seq1  A-TTCTGCGAATGAGGTCTATCTG-CTCCAG-AGTGAGACGCAGGGCATC  997
      | |||||||||||||||||||||| |||||| |||||||||| |||||||
seq2  ATTTCTGCGAATGAGGTCTATCTGCCTCCAGAAGTGAGACGC-GGGCATC  998

seq1  CCGGTC  1003
      ||||||
seq2  CCGGTC  1004

seq1: chr8_108657713_108658576
seq2: B6Ng01-056L02.g_68_934 (reverse)

seq1  CATCCTGGTCTGATGATT-GCCAGGGCAACCCACGGGCCCGTACTACAGT  49
      |||||||||||||||||| |||||||||||||||||||||||||| || |
seq2  CATCCTGGTCTGATGATTGGCCAGGGCAACCCACGGGCCCGTACTTCAAT  50

seq1  CTC-ATTGTCCACCACATCAGCCTTGCTGCTGTGGGGGGCAGGGCAAAGG  98
      ||| ||||||||||||||||||| || |||||||||||||||||||||||
seq2  CTCAATTGTCCACCACATCAGCC-TGATGCTGTGGGGGGCAGGGCAAAGG  99

seq1  ATCAGAAATGTCCAAGGATTGTCACCCCCATCCCAGCTCCTACACTC-AC  147
      |||| |||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATCAAAAATGTCCAAGGATTGTCACCCCCATCCCAGCTCCTACACTCAAC  149

seq1  CAAGGGCCTGTCTCGTA-TTTCTGCTTTACCACTTCTGGCTTCGAGAACA  196
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CAAGGGCCTGTCTCGTATTTTCTGCTTTACCACTTCTGGCTTCGAGAACA  199

seq1  ACTGACCTGAGAGGAGATGGCATGGGGGTCAGCAGGGTCTGGTGGAGGAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCTGAGAGGAGATGGCATGGGGGTCAGCAGGGTCTGGTGGAGGAA  249

seq1  GTCTCTCCACCAAGCTCAGCAAAAATAGGACCGGTGAGGGCATTGAGGAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCCACCAAGCTCAGCAAAAATAGGACCGGTGAGGGCATTGAGGAC  299

seq1  GCGGCAGAGGGGTTTCTACCTTGTGTTCTCTTAGAGAAGGTCACAAGTCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCAGAGGGGTTTCTACCTTGTGTTCTCTTAGAGAAGGTCACAAGTCA  349

seq1  GCAAGGGGACTCTGTTGAAGGGATGGGCACTCACCCAGTCCTGACAGTAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGGGACTCTGTTGAAGGGATGGGCACTCACCCAGTCCTGACAGTAG  399

seq1  CTGGCAAGCAGGGCAAGAATCTTACCATTGGACCCTTCAAGTAGGTGGAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAAGCAGGGCAAGAATCTTACCATTGGACCCTTCAAGTAGGTGGAG  449

seq1  AATAACAGCTACCATAGTCTTCACTTCCCAGACCCCAAAGTCATCTTCGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAGCTACCATAGTCTTCACTTCCCAGACCCCAAAGTCATCTTCGG  499

seq1  TAGCATCTGTTTCTAGTCCCAAGTCTATAGGCAGAGAAGTGACAACTGAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATCTGTTTCTAGTCCCAAGTCTATAGGCAGAGAAGTGACAACTGAG  549

seq1  GTCCAGGTCTGTACATCCCACGTCACCCCGAAACACCCAGAGAATCCTAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGGTCTGTACATCCCACGTCACCCCGAAACACCCAGAGAATCCTAG  599

seq1  CAAACACTAGTTGTGGCCCAGTTCATACATGTACCTACAGGTCCTCAGAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACTAGTTGTGGCCCAGTTCATACATGTACCTACAGGTCCTCAGAC  649

seq1  CAAACACAGACATGTCCACATTCCAAATGTATCCCAAAGAATGAGGCTAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACAGACATGTCCACATTCCAAATGTATCCCAAAGAATGAGGCTAA  699

seq1  AAACATAGACCTGTCTACATTCATACAGCCCATACGGCATCATGCACATG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAGACCTGTCTACATTCATACAGCCCATACGGCATCATGCACATG  749

seq1  CTTGGACATATTAGTCACCCCTCCACCTTAATTTTGATGGGTCACAGATA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGACATATTAGTCACCCCTCCACCTTAATTTTGATGGGTCACAGATA  799

seq1  CCCTGTGCCATGGTGCCCACTGTGAGGTCTCTGGCGGAGCAGGTGCTTGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGCCATGGTGCCCACTGTGAGGTCTCTGGCGGAGCAGGTGCTTGG  849

seq1  GTGCTGCATATGGAATTC  864
      ||||||||||||||||||
seq2  GTGCTGCATATGGAATTC  867