BAC Information

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BAC

Clone NameB6Ng01-059E01
Chromosome2 (Build37)8 (Build37)
Map Location 130,832,768 - 130,833,89892,007,580 - 92,007,635
singlet/doubletsingletsinglet
Overlap geneAtrn
Upstream geneTgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, LOC100043768
Downstream geneGfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24, LOC100043463, Smox, Adra1d, Lamr1-ps1, Prnp, Prnd, Rassf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059E01.bB6Ng01-059E01.g
ACCDH880589DH880590
length1,110381
definitionDH880589|Mus musculus domesticus DNA, BAC clone: B6Ng01-059E01, 5' end.DH880590|Mus musculus domesticus DNA, BAC clone: B6Ng01-059E01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(130,832,768 - 130,833,898)(92,007,580 - 92,007,635)
sequence
gaattcaaggccttgggcctacagagtagaagagagaagaatgaggattc
gaacacctgattaaatagataccatttcctgctaccaacctgtgccttag
ctactcttctattgccgtgacaaaacatcatacccaaggcagcttataaa
agaaagcatttattaggactcacagtttcaagggttatactccaaaacca
tcatggccgggagcaggcagcaggcaggaacatctgctgtgaggaagagc
tgagagctcacttctttatccacaaataggaggcagagagaaagctaact
aggaatagaatgagctttgcagacctcaaagcccacctccttcccaaaca
tttccaccaattgggaactaagtattctaatctgtgagcctctggaggcc
cattcttatttaaactaccacactttataagttaatactacatgtgatga
ggaaactggtatgggaattctgaaaagtagttcacaggagtgggaggggc
tgaacgtgagtagatgctagcatgtgtgtcaggagtgaagtgttcagagc
attgcctggtttgacttctctccagagctgaggtgaacatgctttgtgcc
aatacaaacccgtattaaagcggtggtagttactgaaaatcagtgcaggg
ctgtggtctcaacacaatgtttgaaaaagaaaacagggcatccacatcag
gcagtgtacagctgcttataattccagtcctctggcctctgctcacatgc
acatacccccccatacatacacacatgattaaacataatgaaaaattaaa
aattaatgctataaaaatggaaagagccgggcgtggtggtgcatgccttt
aatcccagcacttgggaggcagaggcaggcggatttctgagttcgaggcc
agcctgatctacagagtgagttccagtacagctagggctacacagagaaa
ccctgtctcgaaaacaaaacaaaacaaaacaaaaaaaaagtggaaagaag
gttcactgtttcacagaactctgaagtgataatcattccagtttaaatat
actcatagtgcaccagctctccatcttgcaactgagcctgtgagaaagac
cagtcctctc
tggagacttttcagagggtctatacatgctagggccctgagagctgttgc
ttgcttgctgttgcttgctgttggtcacggtttgttagatagtgcacaca
gaaggagagagaagaaattagatatccttgtggcaaagatcaaactcgcc
ccaaggaactcgatgcctcatcgacagaaaggagtctaaggatgacatca
ctgcctttgcctctccttactactggtaggggttgaagaagaaggggtgg
aagaaagaagaacccccaaaatagcctaagtccagatagagtagctaact
ttaattttttaatttgtattttaaatttatgtatgtgtgcatatgcatgc
cacagtttgtgtgtgtaggtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_130832768_130833898
seq2: B6Ng01-059E01.b_48_1157

seq1  GAATTCAAGGCCTTGGGCCTACAGAGTAGAAGAGAGAAGAATGAGGATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCTTGGGCCTACAGAGTAGAAGAGAGAAGAATGAGGATTC  50

seq1  GAACACCTGATTAAATAGATACCATTTCCTGCTACCAACCTGTGCCTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACCTGATTAAATAGATACCATTTCCTGCTACCAACCTGTGCCTTAG  100

seq1  CTACTCTTCTATTGCCGTGACAAAACATCATACCCAAGGCAGCTTATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCTTCTATTGCCGTGACAAAACATCATACCCAAGGCAGCTTATAAA  150

seq1  AGAAAGCATTTATTAGGACTCACAGTTTCAAGGGTTATACTCCAAAACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCATTTATTAGGACTCACAGTTTCAAGGGTTATACTCCAAAACCA  200

seq1  TCATGGCCGGGAGCAGGCAGCAGGCAGGAACATCTGCTGTGAGGAAGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCCGGGAGCAGGCAGCAGGCAGGAACATCTGCTGTGAGGAAGAGC  250

seq1  TGAGAGCTCACTTCTTTATCCACAAATAGGAGGCAGAGAGAAAGCTAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCTCACTTCTTTATCCACAAATAGGAGGCAGAGAGAAAGCTAACT  300

seq1  AGGAATAGAATGAGCTTTGCAGACCTCAAAGCCCACCTCCTTCCCAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATAGAATGAGCTTTGCAGACCTCAAAGCCCACCTCCTTCCCAAACA  350

seq1  TTTCCACCAATTGGGAACTAAGTATTCTAATCTGTGAGCCTCTGGAGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACCAATTGGGAACTAAGTATTCTAATCTGTGAGCCTCTGGAGGCC  400

seq1  CATTCTTATTTAAACTACCACACTTTATAAGTTAATACTACATGTGATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTATTTAAACTACCACACTTTATAAGTTAATACTACATGTGATGA  450

seq1  GGAAACTGGTATGGGAATTCTGAAAAGTAGTTCACAGGAGTGGGAGGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTGGTATGGGAATTCTGAAAAGTAGTTCACAGGAGTGGGAGGGGC  500

seq1  TGAACGTGAGTAGATGCTAGCATGTGTGTCAGGAGTGAAGTGTTCAGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACGTGAGTAGATGCTAGCATGTGTGTCAGGAGTGAAGTGTTCAGAGC  550

seq1  ATTGCCTGGTTTGACTTCTCTCCAGAGCTGAGGTGAACATGCTTTGTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCTGGTTTGACTTCTCTCCAGAGCTGAGGTGAACATGCTTTGTGCC  600

seq1  AATACAAACCCGTATTAAAGCGGTGGTAGTTACTGAAAATCAGTGCAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAACCCGTATTAAAGCGGTGGTAGTTACTGAAAATCAGTGCAGGG  650

seq1  CTGTGGTCTCAACACAATGTTTGAAAAAGAAAACAGGGCATCCACATCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTCTCAACACAATGTTTGAAAAAGAAAACAGGGCATCCACATCAG  700

seq1  GCAGTGTACAGCTGCTTATAATTCCAGTCCTCTGGCCTCTGCTCACATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTACAGCTGCTTATAATTCCAGTCCTCTGGCCTCTGCTCACATGC  750

seq1  ACATACCCCCCCATACATACACACATGATTAAACATAATGAAAAATTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACCCCCCCATACATACACACATGATTAAACATAATGAAAAATTAAA  800

seq1  AATTAATGCTATAAAAATGGAAAGAGCCGGGCGTGGTGGTGCATGCCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATGCTATAAAAATGGAAAGAGCCGGGCGTGGTGGTGCATGCCTTT  850

seq1  AATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCC  900

seq1  AGCCTGATCTACAGAGTGAGTTCCAGTACAGCTAGGGCTACACAGAGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGATCTACAGAGTGAGTTCCAGTACAGCTAGGGCTACACAGAGAAA  950

seq1  CCCTGTCTCGAAAAACAAAAACAAAAACAAAAACAAAAAAAAAAGTGGAA  1000
      |||||||||| |||||||||   |||||||||   |||||||||||||||
seq2  CCCTGTCTCG-AAAACAAAA--CAAAACAAAA--CAAAAAAAAAGTGGAA  995

seq1  AGAAAGGTTCACTGTTTCACAGGAAAACTCTGAGAGGTGATAATCCAATC  1050
      || |||||||||||||||||||   ||||||  || |||||||||  || 
seq2  AG-AAGGTTCACTGTTTCACAG---AACTCT--GAAGTGATAATC--ATT  1037

seq1  CCAGTTTAAAATATACTCCATAGTGCACACAGCCTCTCCCATCCTTGGCA  1100
      ||||||| ||||||||| |||||||||| ||| |||| |||||  | |||
seq2  CCAGTTT-AAATATACT-CATAGTGCAC-CAG-CTCT-CCATC--TTGCA  1080

seq1  ACTGAGGCCTGTGAG-AAGACTCAGTCCTCTC  1131
      ||||| ||||||||| ||||| ||||||||||
seq2  ACTGA-GCCTGTGAGAAAGAC-CAGTCCTCTC  1110

seq1: chr8_92007580_92007635
seq2: B6Ng01-059E01.g_401_454 (reverse)

seq1  CACACACACACACACACACACAGGAGGGAAT-TTATATGCATATGCACAC  49
      |||||||||||||  |||||||  |   | | |   ||||||||||||||
seq2  CACACACACACACCTACACACACAA---ACTGTGGCATGCATATGCACAC  47

seq1  ATACATA  56
      |||||||
seq2  ATACATA  54