BAC Information

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BAC

Clone NameB6Ng01-059J11
Chromosome8 (Build37)
Map Location 51,560,341 - 51,680,923
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039919, EG667495, LOC100039954
Downstream geneLOC100039966, LOC667517
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059J11.bB6Ng01-059J11.g
ACCDH880821DH880822
length1,1511,105
definitionDH880821|Mus musculus domesticus DNA, BAC clone: B6Ng01-059J11, 5' end.DH880822|Mus musculus domesticus DNA, BAC clone: B6Ng01-059J11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,679,749 - 51,680,923)(51,560,341 - 51,561,459)
sequence
gaattctttaatcatctacaatggtctctaaaaagaaaaattaattttgt
taactagtattttaatttttttcaaataattacttaattataatttttgt
ttgacgagattattttccaaccatattaattgcgataatgacaggtaatt
ttatttttcttgctgaatttttttcctgtaaatgactagattgcactcaa
gctataagttattagaataaatgaaacaacaataaagattatttttaata
gtgtcctgttggtacatactacataagactgaaattattatctatgtaag
ataaattatttcatagaagtaatactataaatatatatatatatatatat
atatatatatatattgccagtatctctaagattcaagtgaaacttcaaaa
tttaaatctgcttttctaagtaatgagttgaactctagttaatgcaagaa
tgtacttttctttcacataataatctcagagaatgcttcattaagaggtt
gtttggggaaaagaaagggaatcatgggagaaagaggactctgtgacaca
tgcagtcctacagctcctgtctcttccaaatactcacaaaaccctgtgta
atcatctaccaggagaaccaggagctagagatgttcagatgcaaaaccta
taataagcaactgaagagatgaggtttctgtgttgcttttgtgttttatt
taagaattgatgtccttagagatggagagatagcttgaaaattaagggaa
tttgttcttctggaggagataagtctggtttctagcactcatattctgca
gctcaggttccgctataacttctgctcaaagcgacctgactccctgtctg
tcttccttggacagcttcacttatttgcaaatagcacacatggacatccc
cggatatacaaaaacacacaatcacagataaataaattgtagaattgatt
tttttttatagtctagaaatgagagacaaattcatgtatctagacatttt
ggtatttaatattgttcatggcagcataagactgactttctggctagtct
tctcactagtagaatattatactgatatgatggatgtaaatctctacact
acttgttctcaaggcatgtctatgccatactgtgggatgcaggagcccac
a
gaattcatgcctggaattgattggctaggaaatcccaatgagtaaactac
tgatgtcatttccctaaacaattagaattttcacgtataattactttcta
aatattcacatttgtatcaaaaatttttgctgcttttgggcttgttattg
gaagcttatattttaaaataattattcatgcttactcatattattagcca
acataataaaaaaaaagggacggttaatgattatcctgaatgggaaatag
atactatcttctgcaagacatgggaatgatctcataaaagtagaggaaaa
gaagagtttgtagtctctcacagtagactattgtgtaataaattgctcca
aaatggtcattacagtcttgattcaggaaccctgtgcacaccatgttggg
taccagatataaatgttaatgccaattttatatcctcagatggagggatg
agatgtgaaccataactaagctctgcgaatacagggcttgtgctgaggtc
acagtgtttctatctaactatccctagggctaagcctggaagcttctagg
ctctgtacaatctaatcttttgtaagtccagaccttggaggcttcagcga
ctgacctccttctgctaacttagacctacaacatttcagcctccatgatt
taactgctaaataaactcactctctctagcgatttttgagctcttggtag
ctgatttaactcagcttctctggttcaaactccttccaaagcaggttgat
tcaaattgacttctctcagcgtctaaccaaattgttctgcttagaaagac
tgcctctgaactttaagaactgaactttcttgaagcttaactgaactcca
ctgtactgaacagaagtggaattgaattccatcctactctctctgtccac
ttaacacaggacctacatagtattcaatttgattggcctgactattcttt
gtgatgccccagtctttcatttgaataatatttgctcatgccaaatatgt
tcacgtttagttttatagaagtccacagttaagagatttggactttaaat
agaacccatttacattataaagcacattgtactgttggctagggtggatg
ccatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_51679749_51680923
seq2: B6Ng01-059J11.b_48_1198 (reverse)

seq1  TGTGGGCT-CTGCTATCCCACAGTAGTGGCCAATAGACATTGCCTTGAGG  49
      |||||||| |||| ||||||||||| ||||  ||||||| |||||||| |
seq2  TGTGGGCTCCTGC-ATCCCACAGTA-TGGC--ATAGACA-TGCCTTGA-G  44

seq1  AACAAAGTAAGTGTAGAGATATTACATCCATCATAATCAGTATATATATT  99
      ||| |||| ||||||||||| ||||||||||||| ||||||||| |||||
seq2  AAC-AAGT-AGTGTAGAGAT-TTACATCCATCAT-ATCAGTATA-ATATT  89

seq1  TTTAACTTAAGTGAGAAGACTTAGGCCAGAAAGTCAGTCTTATGCTGCCA  149
       |  |||  ||||||||||||   ||||||||||||||||||||||||||
seq2  CT--ACT--AGTGAGAAGACT--AGCCAGAAAGTCAGTCTTATGCTGCCA  133

seq1  TGGAACAATATTAAATACCAAAATGTCTAAGATACATGAATTTGTCTCCT  199
      | |||||||||||||||||||||||||| |||||||||||||||||| ||
seq2  T-GAACAATATTAAATACCAAAATGTCT-AGATACATGAATTTGTCT-CT  180

seq1  CATTTTCTAGACTTATAAAAAAAAATCAATTCTACAATTTTATTTTATCT  249
      || ||||||||| |||||||||||||||||||||||||||   |||||||
seq2  CA-TTTCTAGAC-TATAAAAAAAAATCAATTCTACAATTT--ATTTATCT  226

seq1  GTGATTGTGTGTTTTTGTATATCCGGGGATGTCCATGTGTGGCTATTTGC  299
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTGATTGTGTGTTTTTGTATATCCGGGGATGTCCATGTGT-GCTATTTGC  275

seq1  AAATAAGTGAAGCTGTCCAAGGAAGACAGACAGGGAGTCAGGTCGCTTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGTGAAGCTGTCCAAGGAAGACAGACAGGGAGTCAGGTCGCTTTG  325

seq1  AGCAGAAGTTATAGCGGAACCTGAGCTGCAGAATATGAGTGCTAGAAACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAGTTATAGCGGAACCTGAGCTGCAGAATATGAGTGCTAGAAACC  375

seq1  AGACTTATCTCCTCCAGAAGAACAAATTCCCTTAATTTTCAAGCTATCTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTATCTCCTCCAGAAGAACAAATTCCCTTAATTTTCAAGCTATCTC  425

seq1  TCCATCTCTAAGGACATCAATTCTTAAATAAAACACAAAAGCAACACAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTCTAAGGACATCAATTCTTAAATAAAACACAAAAGCAACACAGA  475

seq1  AACCTCATCTCTTCAGTTGCTTATTATAGGTTTTGCATCTGAACATCTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCATCTCTTCAGTTGCTTATTATAGGTTTTGCATCTGAACATCTCT  525

seq1  AGCTCCTGGTTCTCCTGGTAGATGATTACACAGGGTTTTGTGAGTATTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTGGTTCTCCTGGTAGATGATTACACAGGGTTTTGTGAGTATTTG  575

seq1  GAAGAGACAGGAGCTGTAGGACTGCATGTGTCACAGAGTCCTCTTTCTCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGACAGGAGCTGTAGGACTGCATGTGTCACAGAGTCCTCTTTCTCC  625

seq1  CATGATTCCCTTTCTTTTCCCCAAACAACCTCTTAATGAAGCATTCTCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTCCCTTTCTTTTCCCCAAACAACCTCTTAATGAAGCATTCTCTG  675

seq1  AGATTATTATGTGAAAGAAAAGTACATTCTTGCATTAACTAGAGTTCAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATTATGTGAAAGAAAAGTACATTCTTGCATTAACTAGAGTTCAAC  725

seq1  TCATTACTTAGAAAAGCAGATTTAAATTTTGAAGTTTCACTTGAATCTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACTTAGAAAAGCAGATTTAAATTTTGAAGTTTCACTTGAATCTTA  775

seq1  GAGATACTGGCAATATATATATATATATATATATATATATATATATTTAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATACTGGCAATATATATATATATATATATATATATATATATATTTAT  825

seq1  AGTATTACTTCTATGAAATAATTTATCTTACATAGATAATAATTTCAGTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTACTTCTATGAAATAATTTATCTTACATAGATAATAATTTCAGTC  875

seq1  TTATGTAGTATGTACCAACAGGACACTATTAAAAATAATCTTTATTGTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTAGTATGTACCAACAGGACACTATTAAAAATAATCTTTATTGTTG  925

seq1  TTTCATTTATTCTAATAACTTATAGCTTGAGTGCAATCTAGTCATTTACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTATTCTAATAACTTATAGCTTGAGTGCAATCTAGTCATTTACA  975

seq1  GGAAAAAAATTCAGCAAGAAAAATAAAATTACCTGTCATTATCGCAATTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAAATTCAGCAAGAAAAATAAAATTACCTGTCATTATCGCAATTA  1025

seq1  ATATGGTTGGAAAATAATCTCGTCAAACAAAAATTATAATTAAGTAATTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTTGGAAAATAATCTCGTCAAACAAAAATTATAATTAAGTAATTA  1075

seq1  TTTGAAAAAAATTAAAATACTAGTTAACAAAATTAATTTTTCTTTTTAGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAAAAATTAAAATACTAGTTAACAAAATTAATTTTTCTTTTTAGA  1125

seq1  GACCATTGTAGATGATTAAAGAATTC  1175
      ||||||||||||||||||||||||||
seq2  GACCATTGTAGATGATTAAAGAATTC  1151

seq1: chr8_51560341_51561459
seq2: B6Ng01-059J11.g_69_1173

seq1  GAATTCATGCCTGGAATTGATTGGCTAGGAAATCCCAATGAGTAAACTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCCTGGAATTGATTGGCTAGGAAATCCCAATGAGTAAACTAC  50

seq1  TGATGTCATTTCCCTAAACAATTAGAATTTTCACGTATAATTACTTTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCATTTCCCTAAACAATTAGAATTTTCACGTATAATTACTTTCTA  100

seq1  AATATTCACATTTGTATCAAAAATTTTTGCTGCTTTTGGGCTTGTTATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCACATTTGTATCAAAAATTTTTGCTGCTTTTGGGCTTGTTATTG  150

seq1  GAAGCTTATATTTTAAAATAATTATTCATGCTTACTCATATTATTAGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTATATTTTAAAATAATTATTCATGCTTACTCATATTATTAGCCA  200

seq1  ACATAATAAAAAAAAAGGGACGGTTAATGATTATCCTGAATGGGAAATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATAAAAAAAAAGGGACGGTTAATGATTATCCTGAATGGGAAATAG  250

seq1  ATACTATCTTCTGCAAGACATGGGAATGATCTCATAAAAGTAGAGGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATCTTCTGCAAGACATGGGAATGATCTCATAAAAGTAGAGGAAAA  300

seq1  GAAGAGTTTGTAGTCTCTCACAGTAGACTATTGTGTAATAAATTGCTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTTTGTAGTCTCTCACAGTAGACTATTGTGTAATAAATTGCTCCA  350

seq1  AAATGGTCATTACAGTCTTGATTCAGGAACCCTGTGCACACCATGTTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTCATTACAGTCTTGATTCAGGAACCCTGTGCACACCATGTTGGG  400

seq1  TACCAGATATAAATGTTAATGCCAATTTTATATCCTCAGATGGAGGGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGATATAAATGTTAATGCCAATTTTATATCCTCAGATGGAGGGATG  450

seq1  AGATGTGAACCATAACTAAGCTCTGCGAATACAGGGCTTGTGCTGAGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGAACCATAACTAAGCTCTGCGAATACAGGGCTTGTGCTGAGGTC  500

seq1  ACAGTGTTTCTATCTAACTATCCCTAGGGCTAAGCCTGGAAGCTTCTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTTTCTATCTAACTATCCCTAGGGCTAAGCCTGGAAGCTTCTAGG  550

seq1  CTCTGTACAATCTAATCTTTTGTAAGTCCAGACCTTGGAGGCTTCAGCGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTACAATCTAATCTTTTGTAAGTCCAGACCTTGGAGGCTTCAGCGA  600

seq1  CTGACCTCCTTCTGCTAACTTAGACCTACAACATTTCAGCCTCCATGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTCCTTCTGCTAACTTAGACCTACAACATTTCAGCCTCCATGATT  650

seq1  TAACTGCTAAATAAACTCACTCTCTCTAGCGATTTTTGAGCTCTTGGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGCTAAATAAACTCACTCTCTCTAGCGATTTTTGAGCTCTTGGTAG  700

seq1  CTGATTTAACTCAGCTTCTCTGGTTCAAACTCCTTCCAAAGCAGGTTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTAACTCAGCTTCTCTGGTTCAAACTCCTTCCAAAGCAGGTTGAT  750

seq1  TCAAATTGACTTCTCTCAGCGTCTAACCAAATTGTTCTGCTTAGAAAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTGACTTCTCTCAGCGTCTAACCAAATTGTTCTGCTTAGAAAGAC  800

seq1  TGCCTCTGAACTTTAAGAACTGAAC-TTCTTGAAGCTTAACTGAACTCCA  849
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGCCTCTGAACTTTAAGAACTGAACTTTCTTGAAGCTTAACTGAACTCCA  850

seq1  CTGTACTGAACAGAAGT-GAATTGAATTCCATCCTACTCTCTCTGTCCAC  898
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTGTACTGAACAGAAGTGGAATTGAATTCCATCCTACTCTCTCTGTCCAC  900

seq1  TT-ACACAGGACCTACATAGTATTCAATTTTGATTGGCCTGACTATTCTT  947
      || |||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTAACACAGGACCTACATAGTATTCAA-TTTGATTGGCCTGACTATTCTT  949

seq1  TGTGATGCCCCAAGTCTTTCATTTGAAATAATATTTGCTTCATGCCAAAA  997
      ||||||||||| ||||||||||||| |||||||||||| ||||||| |||
seq2  TGTGATGCCCC-AGTCTTTCATTTG-AATAATATTTGC-TCATGCC-AAA  995

seq1  TATG-TCACGTTTAGTTTTATAGAAGCCCACAGTTAAGAGACTTTGGACT  1046
      |||| ||||||||||||||||||||| |||||||||||||| ||||||||
seq2  TATGTTCACGTTTAGTTTTATAGAAGTCCACAGTTAAGAGA-TTTGGACT  1044

seq1  TTTAAAATAGAACCCCATTTTACATTATAAAAGCAACATTGTACTTGGTT  1096
      ||  |||||||||||   |||||||||| ||||| ||||||||||  |||
seq2  TT--AAATAGAACCC--ATTTACATTAT-AAAGC-ACATTGTACT--GTT  1086

seq1  GGGCCAAGGGGTGGAATGCCATT  1119
      ||  | | |||||| ||||||||
seq2  GG--CTA-GGGTGG-ATGCCATT  1105