BAC Information

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BAC

Clone NameB6Ng01-062D08
Chromosome8 (Build37)
Map Location 93,805,033 - 93,928,982
singlet/doubletdoublet
Overlap geneRpgrip1l, AJ237917
Upstream geneTox3, LOC100041133, Chd9, LOC100041156, EG626231, Rbl2, Aktip, LOC667162, LOC100041222
Downstream geneLOC100041254, LOC674324, LOC100040628, Irx3, 4933436C20Rik, Irx5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062D08.bB6Ng01-062D08.g
ACCDH882676DH882677
length1,0891,034
definitionDH882676|Mus musculus domesticus DNA, BAC clone: B6Ng01-062D08, 5' end.DH882677|Mus musculus domesticus DNA, BAC clone: B6Ng01-062D08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,805,033 - 93,806,145)(93,927,934 - 93,928,982)
sequence
gaattcagatactgtacacactccagaggagtccacggctccaaacctca
gcaactaacaggcagggctagcctcctccacttacaagagcactcaatac
taagaaaaggcatcgcccacctgatctacacttaattctgagaaaacggc
aagtctgtaataatttcagacgtactgaaccacacggggtaactgacact
aagaaggggtgcaagggcggctttaccctacaataagtccaacaggctaa
cgaagaacaaataacttgactgttgacacagagacgattatgaagacaga
atcatgattgattccttaaccaaggcttagtgctttgttctgagacaggg
tctctggcataggctggtcttgagctccctatgtggctgagaatgatctg
aatcttgtggcctggtatccacctctctagggctaagactgtaggcatgt
accactacacatggttatatgatgccgagatacaacctagggctctgtga
acatactctaccaactgagctacctctgcagcccaatgtagtgtcagtta
cagcttaaatctgctagtgatcaaggcgtggaagactagaggcagcacga
gataggaacaactagatgctgcagagggagaaaacaaccgtttctttatc
tagtgggtcttgaacatggcaaacaacggtgctacagcagctcgcttctc
tgacacgcagggacatttcaaagggagaggcctggcaactcacgtttctg
tagcctcccaggtgatagccagacttcaggaaaacttattttgatctgca
tttcagcagaaaaccattatctgtgaagcttgacgtgactggggaatcac
cctcagctccgagccttctacttattttaaactcagtaaataaacaaaaa
tctatacagtctggctttatactaatgaggaagtgaatgaaaagaaagta
tactggaatggccctaaggctgccaacaagcctgagcttcattcaaagag
atactttctgtaaagcacactttaaaaaaatctgattcatttcacatttg
aatacttactacatcaaattcagctgaaataaatggaat
gaattcagttctggtggcactggagggcaccgacctagataagacagaaa
gctacagatgggaaataagcatggcctttaagtatactggcaatgggggg
tgggagagatggctcagaggttaagaacaccgactgctcttctagaggtc
ctgggttcaattcccagcaaccacatagtggctcacaaccatctgtaatg
gggatctgatgccctcttctggtgtgtctgaagacagtgacagtattctc
acatatatgaaatttaaaaaaaaaaaaaaaagtatactggccatggcagg
aatctgagacattctggagaagtaaaattgccagaacctgatgtcagaag
caatgaggagcagttgcagacagtaagattcctaacctgaagaacaggat
caggggaccccactaggcacaaaacatgagccagtgctgaagagcatggg
tccctaataaaatggaagtcgtggcctgtgacgggcatgcgctaagcctt
cttgtctcctcttcccattcctgggcaagttcctcctaactgggtcaaca
tctgacctctgaaccctttggccttccttagacccagggcttcccacctg
acctagtcacatggcttgtgaaggtcctcccacacgaccttcccacgagg
aaggtcaaagaaagcagggacctttgatcaccctacacaactttatcttt
aactcccacagcactgcagggcctcagtggggaggctacagagcacacga
ctacctaatatggatcgtattgagttgggtgctagtgggaaaatttcagg
tagaacctagcacatagtcaggactgagggcttgtgggcatcacagataa
gcaaacatgggaagagtagtgggcactggaaaagggcaagctgtctcaga
gggctaacagatgcagaaaagatggaagcagcagagattatcagggcgct
tccacgagccaggatgagctggtcctagacttcctgcttctaagctcaaa
agctgtacctctctgtgctcagtgtcctcggctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_93805033_93806145
seq2: B6Ng01-062D08.b_46_1134

seq1  GAATTCAGATACTGTACACACTCCAGAGGAGTCCACGGCTCCAAACCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATACTGTACACACTCCAGAGGAGTCCACGGCTCCAAACCTCA  50

seq1  GCAACTAACAGGCAGGGCTAGCCTCCTCCACTTACAAGAGCACTCAATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTAACAGGCAGGGCTAGCCTCCTCCACTTACAAGAGCACTCAATAC  100

seq1  TAAGAAAAGGCATCGCCCACCTGATCTACACTTAATTCTGAGAAAACGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAAGGCATCGCCCACCTGATCTACACTTAATTCTGAGAAAACGGC  150

seq1  AAGTCTGTAATAATTTCAGACGTACTGAACCACACGGGGTAACTGACACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGTAATAATTTCAGACGTACTGAACCACACGGGGTAACTGACACT  200

seq1  AAGAAGGGGTGCAAGGGCGGCTTTACCCTACAATAAGTCCAACAGGCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGGGTGCAAGGGCGGCTTTACCCTACAATAAGTCCAACAGGCTAA  250

seq1  CGAAGAACAAATAACTTGACTGTTGACACAGAGACGATTATGAAGACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGAACAAATAACTTGACTGTTGACACAGAGACGATTATGAAGACAGA  300

seq1  ATCATGATTGATTCCTTAACCAAGGCTTAGTGCTTTGTTCTGAGACAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGATTGATTCCTTAACCAAGGCTTAGTGCTTTGTTCTGAGACAGGG  350

seq1  TCTCTGGCATAGGCTGGTCTTGAGCTCCCTATGTGGCTGAGAATGATCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGCATAGGCTGGTCTTGAGCTCCCTATGTGGCTGAGAATGATCTG  400

seq1  AATCTTGTGGCCTGGTATCCACCTCTCTAGGGCTAAGACTGTAGGCATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGTGGCCTGGTATCCACCTCTCTAGGGCTAAGACTGTAGGCATGT  450

seq1  ACCACTACACATGGTTATATGATGCCGAGATACAACCTAGGGCTCTGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTACACATGGTTATATGATGCCGAGATACAACCTAGGGCTCTGTGA  500

seq1  ACATACTCTACCAACTGAGCTACCTCTGCAGCCCAATGTAGTGTCAGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTCTACCAACTGAGCTACCTCTGCAGCCCAATGTAGTGTCAGTTA  550

seq1  CAGCTTAAATCTGCTAGTGATCAAGGCGTGGAAGACTAGAGGCAGCACGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTAAATCTGCTAGTGATCAAGGCGTGGAAGACTAGAGGCAGCACGA  600

seq1  GATAGGAACAACTAGATGCTGCAGAGGGAGAAAACAACCGTTTCTTTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGAACAACTAGATGCTGCAGAGGGAGAAAACAACCGTTTCTTTATC  650

seq1  TAGTGGGTCTTGAACATGGCAAACAACGGTGCTACAGCAGCTCGCTTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGGTCTTGAACATGGCAAACAACGGTGCTACAGCAGCTCGCTTCTC  700

seq1  TGACACGCAGGGACATTTCAAAGGGAGAGGCCTGGCAACTCACGTTTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACGCAGGGACATTTCAAAGGGAGAGGCCTGGCAACTCACGTTTCTG  750

seq1  TAGCCTCCCAGGTGATAGCCAGACTTCAGGAAAACTTATTTTGATCTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTCCCAGGTGATAGCCAGACTTCAGGAAAACTTATTTTGATCTGCA  800

seq1  TTTCAGCAGAAAACCATTATCTGTGAAGCTTGACGTGACTGGGGAATCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCAGAAAACCATTATCTGTGAAGCTTGACGTGACTGGGGAATCAC  850

seq1  CCTCAGCTCCGAGCCTTCTACTTATTTTAAACTCAGTAAATAAAACAAAA  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCTCAGCTCCGAGCCTTCTACTTATTTTAAACTCAGTAAAT-AAACAAAA  899

seq1  ATCTATACAGTCTGGCTTTATACTAATGAGGAAGTGAATGAAAAAGAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||   |||
seq2  ATCTATACAGTCTGGCTTTATACTAATGAGGAAGTGAATGAAAA--GAAA  947

seq1  GTATTACTGGGAATGGCCCTTAAGGCTGCCAACAAGGCCTGAGGCTTCAT  1000
      ||| |||| |||||||||| ||||||||||||||| |||||| |||||||
seq2  GTA-TACT-GGAATGGCCC-TAAGGCTGCCAACAA-GCCTGA-GCTTCAT  992

seq1  TCCAAAAGAGATACTTTCTGTAAAAGGCACAACTTTAAAAAAAAATCTGT  1050
      ||  ||||||||||||||||||||  |||| |||||  ||||||||||| 
seq2  TC--AAAGAGATACTTTCTGTAAA--GCAC-ACTTT--AAAAAAATCTG-  1034

seq1  ATTCATTTCACATTTTGAATACCTTTACTACATTTAAAATATCAGCTTGA  1100
      |||||||||||| |||||||||  ||||||||  | |||| ||||||   
seq2  ATTCATTTCACA-TTTGAATAC--TTACTACA--TCAAAT-TCAGCT--G  1076

seq1  AAATAAATGGAAT  1113
      |||||||||||||
seq2  AAATAAATGGAAT  1089

seq1: chr8_93927934_93928982
seq2: B6Ng01-062D08.g_69_1102 (reverse)

seq1  GAGCCGAGGACACTGGGGCACAGAGAGGGTTACAGCCTTTTTGAGCTTTA  50
      |||||||||||||| | |||||||||||  ||||||  |||||||| |||
seq2  GAGCCGAGGACACT-GAGCACAGAGAGG--TACAGC--TTTTGAGC-TTA  44

seq1  GAAGCAGGAAGTCTAAGGACCAGGCCTCATCCCTGGCTCTGTGG-AGCGC  99
      |||||||||||||| ||||||||  ||||| |||||||| |||| |||||
seq2  GAAGCAGGAAGTCT-AGGACCAG--CTCAT-CCTGGCTC-GTGGAAGCGC  89

seq1  CCTGGTTAATCTCTGCTGCTTCCATCTTTTCCTGCATCTGTTAGCCCTTC  149
      ||| | |||||||||||||||||||||||| |||||||||||||||| ||
seq2  CCT-GATAATCTCTGCTGCTTCCATCTTTT-CTGCATCTGTTAGCCC-TC  136

seq1  TGAGACAGCTTGCCCTTTTTCCAGTGCCCACTAACTCTTCCCATGTTTGC  199
      ||||||||||||||| |||||||||||||||| |||||||||||||||||
seq2  TGAGACAGCTTGCCC-TTTTCCAGTGCCCACT-ACTCTTCCCATGTTTGC  184

seq1  TTATCTGTGATGCCCACAAGCCCTCAGTCCTGACTATGTGCTAGGTTCTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGTGATGCCCACAAGCCCTCAGTCCTGACTATGTGCTAGGTTCTA  234

seq1  CCTGAAATTTTCCCACTAGCACCCAACTCAATACGATCCATATTAGGTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAATTTTCCCACTAGCACCCAACTCAATACGATCCATATTAGGTAG  284

seq1  TCGTGTGCTCTGTAGCCTCCCCACTGAGGCCCTGCAGTGCTGTGGGAGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGTGCTCTGTAGCCTCCCCACTGAGGCCCTGCAGTGCTGTGGGAGTT  334

seq1  AAAGATAAAGTTGTGTAGGGTGATCAAAGGTCCCTGCTTTCTTTGACCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAAAGTTGTGTAGGGTGATCAAAGGTCCCTGCTTTCTTTGACCTT  384

seq1  CCTCGTGGGAAGGTCGTGTGGGAGGACCTTCACAAGCCATGTGACTAGGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGTGGGAAGGTCGTGTGGGAGGACCTTCACAAGCCATGTGACTAGGT  434

seq1  CAGGTGGGAAGCCCTGGGTCTAAGGAAGGCCAAAGGGTTCAGAGGTCAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGGAAGCCCTGGGTCTAAGGAAGGCCAAAGGGTTCAGAGGTCAGA  484

seq1  TGTTGACCCAGTTAGGAGGAACTTGCCCAGGAATGGGAAGAGGAGACAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACCCAGTTAGGAGGAACTTGCCCAGGAATGGGAAGAGGAGACAAG  534

seq1  AAGGCTTAGCGCATGCCCGTCACAGGCCACGACTTCCATTTTATTAGGGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTAGCGCATGCCCGTCACAGGCCACGACTTCCATTTTATTAGGGA  584

seq1  CCCATGCTCTTCAGCACTGGCTCATGTTTTGTGCCTAGTGGGGTCCCCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGCTCTTCAGCACTGGCTCATGTTTTGTGCCTAGTGGGGTCCCCTG  634

seq1  ATCCTGTTCTTCAGGTTAGGAATCTTACTGTCTGCAACTGCTCCTCATTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTTCTTCAGGTTAGGAATCTTACTGTCTGCAACTGCTCCTCATTG  684

seq1  CTTCTGACATCAGGTTCTGGCAATTTTACTTCTCCAGAATGTCTCAGATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGACATCAGGTTCTGGCAATTTTACTTCTCCAGAATGTCTCAGATT  734

seq1  CCTGCCATGGCCAGTATACTTTTTTTTTTTTTTTTAAATTTCATATATGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCATGGCCAGTATACTTTTTTTTTTTTTTTTAAATTTCATATATGT  784

seq1  GAGAATACTGTCACTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATACTGTCACTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCC  834

seq1  CATTACAGATGGTTGTGAGCCACTATGTGGTTGCTGGGAATTGAACCCAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACAGATGGTTGTGAGCCACTATGTGGTTGCTGGGAATTGAACCCAG  884

seq1  GACCTCTAGAAGAGCAGTCGGTGTTCTTAACCTCTGAGCCATCTCTCCCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTAGAAGAGCAGTCGGTGTTCTTAACCTCTGAGCCATCTCTCCCA  934

seq1  CCCCCCATTGCCAGTATACTTAAAGGCCATGCTTATTTCCCATCTGTAGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCATTGCCAGTATACTTAAAGGCCATGCTTATTTCCCATCTGTAGC  984

seq1  TTTCTGTCTTATCTAGGTCGGTGCCCTCCAGTGCCACCAGAACTGAATTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTCTTATCTAGGTCGGTGCCCTCCAGTGCCACCAGAACTGAATTC  1034