BAC Information

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BAC

Clone NameB6Ng01-063B06
Chromosome8 (Build37)
Map Location 125,056,099 - 125,218,256
singlet/doubletdoublet
Overlap geneCdt1, Aprt, Galns, Trappc2l, Pabpnl1, Cbfa2t3h
Upstream gene1700018B08Rik, Fbxo31, Map1lc3b, Zcchc14, Jph3, Klhdc4, Slc7a5, BC048644, Car5a, Banp, Gm22, Zfpm1, Trhr2, 5830416A07Rik, Il17c, Cyba, Mvd, Snai3, Rnf166, 2310061F22Rik
Downstream geneC230057M02Rik, A530010L16Rik, BC021611, LOC100043225, Cdh15, Ankrd11, Spg7, Rpl13, Cpne7, Sult5a1, LOC100043251, Dpep1, Chmp1a, 4732415M23Rik, Cdk10, Spata2L, 1300018I17Rik, Zfp276, Fanca, Spire2, Tcf25, Mc1r, Tubb3, Def8, Afg3l1, Dbndd1, Gas8, Rn5s-ps1, Rhou
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063B06.bB6Ng01-063B06.g
ACCDH883283DH883284
length1,0931,085
definitionDH883283|Mus musculus domesticus DNA, BAC clone: B6Ng01-063B06, 5' end.DH883284|Mus musculus domesticus DNA, BAC clone: B6Ng01-063B06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,056,099 - 125,057,198)(125,217,159 - 125,218,256)
sequence
gaattctgagactgactcttgactcccatggcctttgaccacaaagagcc
tttcttggcttcctgtgggcctcgaagggtcaaggctgagctcagcctct
tcgcaggaaggaaaaggcctaaagacgacaacagaaccagccctttccct
gggccaggcttcaggggcaacacaggaagaacaggtgggcttttttaggg
gctccatggcaagaaacctgtgcagctggtggggctagggcaggcctcaa
ttaccttactccttaaaaagacagaaagggagtgactggctgtcttagtt
agggttttactgctgtgaacagacaccatgaccaaggcaagtcttaaaaa
aaaaggacaacatataattggggctagcttacaggtttagaagttcaatc
catcatcatcaaggcgggaacatggcagcatctaggcaggcatgatgcag
gaggagctgagagttctacatcttcatctgaaggtgactagtggaaggct
gattcccaggaagctagagtgagggtcttaagcccacacccacagtgaca
cacccactccaacaaggccacacctccaaatagtgccgcttcccaggccg
agcttattcaaaccttgacgctggctaacactgcttctgctgaagcccat
gtgggcagaggctgagggacagatcactgggggttctgggtcctattcac
cattgccagaagcagacatacactgggaatgggttctaacgctttgtctt
aattcagctcccaaaggccgaatttccagacgctgaaagtccctgcccac
atctggctttgatcggtaataaaggattgccatacagtcaatggctgggc
actttctaaacctccccacagctagcacacacacctttctggtattcctg
aattaataccttttaaatctatattcatctctgacatacagagtcttcta
gaccaatggcagcatcaattcacagtcagctcagcaaaggaagtctgaca
ctttcagcatcttcttgctgggtcagagatacactacagcggatgcttga
gtatctgtcatcactttcctttcaagaaatatgcatgggtttg
gaattctccatgaagttcccagatgcaggtctacccagcccaggaggata
actcagaggacaggaatcatgcccagggaggctctagccactctcttaac
tgagcaaagttgctggctatctactgaaaggatgatggatctgatgaaca
caggctccctcagggtgcgccctggctccatggccctgactgtctagctt
attcctccctcccgtgctgtggggcctctggccatctggctgctttgcaa
acgcccagggcctttgcactgtcttccagcagctggaccttgcagttcct
ccacccaaccagccccgtggcgtttcctaaattcatctgtggcatctcgt
ctgtccctctcggttgcattgggctccataaggctgggtctcaggccatc
cagaccaacagaagggcgtgcctagcactgcaaaggaaggggagtgtccg
tggagatatacagccagaaaaagccaggatgcaagttcacaaagcatagc
ttagtctgtgagtatccctagatgcaggaggcagatgtcaccaggagcta
caatgcaagtcaagagaaagagagagaatggcttcttggtcatggatgca
gggatgtaccttctgctgtgtctgctgttggcttctggcctcctcacaag
atcagagcaagctagcctagattccagctgagacagagccgggaggcaca
ttgaacctcctaggaaggaggtcccaacatccaccaaggcaaagggacag
gggacacagtagcctcttccaatggagggacatctccccagagggatata
aggagcagccatggcacagagaacaatggtgtcctttgggcagcccaaga
gccacagtgggctttagctcaagcttgtccctcattttcctaccttctta
tcaccatgttcttacagaggaggacacaaacgagcgagagaagtgtctgc
acgctgtgagctgacactagctatcacctacccagcccatgttctttctg
gccaccagcaccagaaagccagtgaccttctcagactcaacagcagtctg
gccagggtggcctaaggtcctctctgtgaagctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_125056099_125057198
seq2: B6Ng01-063B06.b_45_1137

seq1  GAATTCTGAGACTGACTCTTGACTCCCATGGCCTTTGACCACAAAGAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGACTGACTCTTGACTCCCATGGCCTTTGACCACAAAGAGCC  50

seq1  TTTCTTGGCTTCCTGTGGGCCTCGAAGGGTCAAGGCTGAGCTCAGCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGGCTTCCTGTGGGCCTCGAAGGGTCAAGGCTGAGCTCAGCCTCT  100

seq1  TCGCAGGAAGGAAAAGGCCTAAAGACGACAACAGAACCAGCCCTTTCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCAGGAAGGAAAAGGCCTAAAGACGACAACAGAACCAGCCCTTTCCCT  150

seq1  GGGCCAGGCTTCAGGGGCAACACAGGAAGAACAGGTGGGCTTTTTTAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGGCTTCAGGGGCAACACAGGAAGAACAGGTGGGCTTTTTTAGGG  200

seq1  GCTCCATGGCAAGAAACCTGTGCAGCTGGTGGGGCTAGGGCAGGCCTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCATGGCAAGAAACCTGTGCAGCTGGTGGGGCTAGGGCAGGCCTCAA  250

seq1  TTACCTTACTCCTTAAAAAGACAGAAAGGGAGTGACTGGCTGTCTTAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTACTCCTTAAAAAGACAGAAAGGGAGTGACTGGCTGTCTTAGTT  300

seq1  AGGGTTTTACTGCTGTGAACAGACACCATGACCAAGGCAAGTCTTAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTTACTGCTGTGAACAGACACCATGACCAAGGCAAGTCTTAAAAA  350

seq1  AAAAGGACAACATATAATTGGGGCTAGCTTACAGGTTTAGAAGTTCAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGACAACATATAATTGGGGCTAGCTTACAGGTTTAGAAGTTCAATC  400

seq1  CATCATCATCAAGGCGGGAACATGGCAGCATCTAGGCAGGCATGATGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCATCAAGGCGGGAACATGGCAGCATCTAGGCAGGCATGATGCAG  450

seq1  GAGGAGCTGAGAGTTCTACATCTTCATCTGAAGGTGACTAGTGGAAGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGCTGAGAGTTCTACATCTTCATCTGAAGGTGACTAGTGGAAGGCT  500

seq1  GATTCCCAGGAAGCTAGAGTGAGGGTCTTAAGCCCACACCCACAGTGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCCAGGAAGCTAGAGTGAGGGTCTTAAGCCCACACCCACAGTGACA  550

seq1  CACCCACTCCAACAAGGCCACACCTCCAAATAGTGCCGCTTCCCAGGCCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACTCCAACAAGGCCACACCTCCAAATAGTGCCGCTTCCCAGGCCG  600

seq1  AGCTTATTCAAACCTTGACGCTGGCTAACACTGCTTCTGCTGAAGCCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTATTCAAACCTTGACGCTGGCTAACACTGCTTCTGCTGAAGCCCAT  650

seq1  GTGGGCAGAGGCTGAGGGACAGATCACTGGGGGTTCTGGGTCCTATTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCAGAGGCTGAGGGACAGATCACTGGGGGTTCTGGGTCCTATTCAC  700

seq1  CATTGCCAGAAGCAGACATACACTGGGAATGGGTTCTAACGCTTTGTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCCAGAAGCAGACATACACTGGGAATGGGTTCTAACGCTTTGTCTT  750

seq1  AATTCAGCTCCCAAAGGCCGAATTTCCAGACGCTGAAGGTCCCTGCCCAC  800
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AATTCAGCTCCCAAAGGCCGAATTTCCAGACGCTGAAAGTCCCTGCCCAC  800

seq1  ATCTGGCTTTGATCGGTAATAAAGGATTGCCATACAGTCAATGGCTGGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCTTTGATCGGTAATAAAGGATTGCCATACAGTCAATGGCTGGGC  850

seq1  AC-TTCTAAACCTCCCCACAGCTAGCACACACACCTTTCTGGTATTCCTG  899
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTAAACCTCCCCACAGCTAGCACACACACCTTTCTGGTATTCCTG  900

seq1  AATTAATACCTTTTAAAATCTATATTTCATCTCTGACATACAGAGTCTTC  949
      |||||||||||||| ||||||||| |||||||||||||||||||||||||
seq2  AATTAATACCTTTT-AAATCTATA-TTCATCTCTGACATACAGAGTCTTC  948

seq1  TAAGACCAATGGCAGCATCAATTCACAGTCAGGCCTCAGCAAAGGAAGTC  999
      | ||||||||||||||||||||||||||||||  ||||||||||||||||
seq2  T-AGACCAATGGCAGCATCAATTCACAGTCAG--CTCAGCAAAGGAAGTC  995

seq1  TGACACCTTCAGCATCCTTCCTGCTGGGTCAGAGATAACACTACAGC-GA  1048
      |||||| |||||||| |||| ||||||||||||||| |||||||||| ||
seq2  TGACACTTTCAGCAT-CTTCTTGCTGGGTCAGAGAT-ACACTACAGCGGA  1043

seq1  TGCTTGAGTATCTAGTCATCACTTTCCCTTTCAAAGAAATATGCAT-GGT  1097
      ||||||||||||| ||||||||||| |||||| ||||||||||||| |||
seq2  TGCTTGAGTATCT-GTCATCACTTT-CCTTTC-AAGAAATATGCATGGGT  1090

seq1  TTG  1100
      |||
seq2  TTG  1093

seq1: chr8_125217159_125218256
seq2: B6Ng01-063B06.g_67_1151 (reverse)

seq1  TGAGCTTCACAGAGAGGACCCTGAGCCCACCCTGGCCAGGACTTGCTGTT  50
      |||||||||||||||||| ||| || |||||||||||| ||| ||||| |
seq2  TGAGCTTCACAGAGAGGA-CCTTAGGCCACCCTGGCCA-GAC-TGCTG-T  46

seq1  TGAGTCTGAGAAGGTCACTTGGCCTTTCTGTGTGCTGGTGGCCAGAAAGG  100
      |||||||||||||||||||  | ||||||| ||||||||||||||||| |
seq2  TGAGTCTGAGAAGGTCACT--GGCTTTCTG-GTGCTGGTGGCCAGAAA-G  92

seq1  AACATGGGCTGGGTAGGTGATAGCCTAGTGTCAGCTCACAGCCGTGCAGA  150
      ||||||||||||||||||||||| ||||||||||||||||| ||||||||
seq2  AACATGGGCTGGGTAGGTGATAG-CTAGTGTCAGCTCACAG-CGTGCAGA  140

seq1  CACTTCCTCTCGCTCGTTCTGTGTCCTCCTCTGTAAGCAACATGGTGATA  200
      ||||| |||||||||||| |||||||||||||||||| ||||||||||||
seq2  CACTT-CTCTCGCTCGTT-TGTGTCCTCCTCTGTAAG-AACATGGTGATA  187

seq1  AGAAGGTAGGAAAATGAGGGACCAAGCTTGAGCTAAAGCCCACTGTGGCT  250
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGAAGGTAGGAAAATGAGGGA-CAAGCTTGAGCTAAAGCCCACTGTGGCT  236

seq1  CTTGGGCTG-CCAAAGGACACCATTGTTCTCTGTGCCATGGCTGCTCCTT  299
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCTGCCCAAAGGACACCATTGTTCTCTGTGCCATGGCTGCTCCTT  286

seq1  ATATCCCTCTGGGGAGATGTCCCTCCATTGGAAGAGGCTACTGTGTCCCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCCTCTGGGGAGATGTCCCTCCATTGGAAGAGGCTACTGTGTCCCC  336

seq1  TGTCCCTTTGCCTTGGTGGATGTTGGGACCTCCTTCCTAGGAGGTTCAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTTTGCCTTGGTGGATGTTGGGACCTCCTTCCTAGGAGGTTCAAT  386

seq1  GTGCCTCCCGGCTCTGTCTCAGCTGGAATCTAGGCTAGCTTGCTCTGATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCCCGGCTCTGTCTCAGCTGGAATCTAGGCTAGCTTGCTCTGATC  436

seq1  TTGTGAGGAGGCCAGAAGCCAACAGCAGACACAGCAGAAGGTACATCCCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGGAGGCCAGAAGCCAACAGCAGACACAGCAGAAGGTACATCCCT  486

seq1  GCATCCATGACCAAGAAGCCATTCTCTCTCTTTCTCTTGACTTGCATTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCATGACCAAGAAGCCATTCTCTCTCTTTCTCTTGACTTGCATTGT  536

seq1  AGCTCCTGGTGACATCTGCCTCCTGCATCTAGGGATACTCACAGACTAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTGGTGACATCTGCCTCCTGCATCTAGGGATACTCACAGACTAAG  586

seq1  CTATGCTTTGTGAACTTGCATCCTGGCTTTTTCTGGCTGTATATCTCCAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCTTTGTGAACTTGCATCCTGGCTTTTTCTGGCTGTATATCTCCAC  636

seq1  GGACACTCCCCTTCCTTTGCAGTGCTAGGCACGCCCTTCTGTTGGTCTGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACTCCCCTTCCTTTGCAGTGCTAGGCACGCCCTTCTGTTGGTCTGG  686

seq1  ATGGCCTGAGACCCAGCCTTATGGAGCCCAATGCAACCGAGAGGGACAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTGAGACCCAGCCTTATGGAGCCCAATGCAACCGAGAGGGACAGA  736

seq1  CGAGATGCCACAGATGAATTTAGGAAACGCCACGGGGCTGGTTGGGTGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGATGCCACAGATGAATTTAGGAAACGCCACGGGGCTGGTTGGGTGGA  786

seq1  GGAACTGCAAGGTCCAGCTGCTGGAAGACAGTGCAAAGGCCCTGGGCGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGCAAGGTCCAGCTGCTGGAAGACAGTGCAAAGGCCCTGGGCGTT  836

seq1  TGCAAAGCAGCCAGATGGCCAGAGGCCCCACAGCACGGGAGGGAGGAATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGCAGCCAGATGGCCAGAGGCCCCACAGCACGGGAGGGAGGAATA  886

seq1  AGCTAGACAGTCAGGGCCATGGAGCCAGGGCGCACCCTGAGGGAGCCTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGACAGTCAGGGCCATGGAGCCAGGGCGCACCCTGAGGGAGCCTGT  936

seq1  GTTCATCAGATCCATCATCCTTTCAGTAGATAGCCAGCAACTTTGCTCAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATCAGATCCATCATCCTTTCAGTAGATAGCCAGCAACTTTGCTCAG  986

seq1  TTAAGAGAGTGGCTAGAGCCTCCCTGGGCATGATTCCTGTCCTCTGAGTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGAGTGGCTAGAGCCTCCCTGGGCATGATTCCTGTCCTCTGAGTT  1036

seq1  ATCCTCCTGGGCTGGGTAGACCTGCATCTGGGAACTTCATGGAGAATTC  1098
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCTGGGCTGGGTAGACCTGCATCTGGGAACTTCATGGAGAATTC  1085