BAC Information

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BAC

Clone NameB6Ng01-063D24
Chromosome8 (Build37)
Map Location 23,169,964 - 23,256,720
singlet/doubletdoublet
Overlap geneAtp7b, Alg11, Nek5, Nek3
Upstream geneLOC100038926, Defcr23, LOC100041688, Defcr25, LOC626605, LOC634825, LOC100040619, LOC100038927, Defcr22, Defcr-rs7, LOC100041759, LOC672740, EG665969, LOC100041787, Defcr3, Defcr5, LOC100041811, Defcr-rs1, LOC100040668, LOC100041843, LOC100040678, EG665927, LOC100040693, Defcr20, LOC100041890, LOC100041895, EG626682, LOC100040706, EG665956, LOC635093, Defcr26, Defcr17, LOC100041952, Defcr-ps1, AY761184, LOC100040729, Defcr24, LOC100040739, Defb1, Defb50, Defb2, Defb10, Defb9, Defb11, Defb15, Defb35, Defb13, C86695, Ccdc70
Downstream geneCkap2, Vps36, Rpl30-ps2, Thsd1, Tpte, Slc25a15, LOC547006, Mrps31, AI316807, Slc20a2, LOC100040803, Vdac3, Dkk4, Polb, Ikbkb, Plat, Ap3m2, Myst3, LOC100042253, Ank1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063D24.bB6Ng01-063D24.g
ACCDH883401DH883402
length1,090970
definitionDH883401|Mus musculus domesticus DNA, BAC clone: B6Ng01-063D24, 5' end.DH883402|Mus musculus domesticus DNA, BAC clone: B6Ng01-063D24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,255,614 - 23,256,720)(23,169,964 - 23,170,934)
sequence
gaattcaacacagcaaagatattgactgagttatttaagcatgtcagttt
tgttcttttcagacagtttttacctggggacatctttcacacctggcaga
attatgcttctactgataagaaccggggagacttaatagcaggccaggtc
ttagtgatagttgtgaccctgagccgtcccctggtgctgcctgttagagg
catattcttcaatgtggggaggggcctaatggccggttttgagtcagggc
tgtctccttttgttacgggaatggagcctaactggaagtgagtcttagtg
agcactagaagctttcttagcaagcccaaacttgagttatggtacagaat
tttctttcctaccatctctaaggagcctggtgtataaggttcttatcatc
caggcatatcggagtcggaactccttgacctgaattctgctttgtgtaac
ttactatttcctaaggaattaaatccttcatagcatcagttttattactt
cacgtttttcttgccttcttactgtactttttaattttccagggacgaag
aagaacctagattggatagttcagtgatgagagagtgtctgctttgtaat
ttagtatcttatctacttggacttgttatgggttaggttgagggtttatg
taggctgacttagggatctaaccatgaaaaatataatgctaatgttatag
caaattgaattctcaagtttctggtggaccattgtgcaaactaactttta
aagacagagccctttctacacagaactgtggctttgggtggtgaccgagc
agtgtaggctcactgactgtcaaggatacatcatgtgatgtaggatgtcc
atcagtgtgggaggtggggcgtgagtgggagcaggtttgtgtggtgtatg
cttttcactaagtttgtgaccttaaatctcacctgaaagataaatttatc
atatatttagaacaggctttaaaaaggaatatctacataatgactgcata
aattcatgcatcttgtagttggcatgaacaaatcaagtttaatatcctct
ttggaacttgtcattaagtttttcttttttggggggggtg
gaattcatcatatgcctgcgacctatacaagtttcagtaagtatttgttg
attgaaaacgcacatgaagaaaagaaaaacagacctgcttttcatgttaa
atattctacgctgtttgcatctctaagaggctgcattaattaaccccctg
tattattaaatgaatgccttcaaggtacaggacttggatgtagacctttt
gaggagcattagccaggcattagcgaggtattagcactcccaggagcaac
tagagtttttatacagcaagcccacgctcaagagctctttaataaggacc
ggggaaagttctgggctcgaaatcgttgtacaccagagggctagtggcac
ccttgatctagagggttttcctcccgggttctcaggggtacgtgtccaca
gtcacgagccctggaggaaccgaggagaaaagcgctttgagcaggtgcgt
acacgctgcggtcaggcaaaggaaacttactttccgactggcctctttgg
ctgtgacctgtctctcctgttcaggcatcgtccccacagacgccaagttc
ttcctgggatccatccccgagcccaaaggtcacctggttggggggaggga
agggcgactttacaagccagggagaggaggcgcgaagaagcgcatccgtg
gttcctggggaacacagggctcagatctcccagccccggcgctgcggact
acggacagcgaggtccgcggtgcgctgcagatagggtgcagcgaggacca
cagtctcaggacgcccgctccagcgcagccccctcttcactccgcgcccc
gctactgcggcggctggggactcgccgactcctctgaaaagagcggactc
tgtacttggaagattagctcgtcgcccgcccggacctccaatggggtccc
accggctggcagcgccgcggtgggggcaggctgggcgccccaagggggct
ttcagacggtagggggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_23255614_23256720
seq2: B6Ng01-063D24.b_48_1137 (reverse)

seq1  CACCCCCCCCCAAAAAAGAAAAACTTTAATGACAAGTTCCAAAAGAGATA  50
      || ||||||||||||||||||||| ||||||||||||||||||   ||||
seq2  CA-CCCCCCCCAAAAAAGAAAAAC-TTAATGACAAGTTCCAAAGAGGATA  48

seq1  TTAAACTTGATGTTTGTTCATGGCAGACTACAAGATGCATGAAATTTTTA  100
      ||||||||||  |||||||||| || |||||||||||||||||   ||||
seq2  TTAAACTTGA--TTTGTTCATGCCA-ACTACAAGATGCATGAA---TTTA  92

seq1  TGCAGTCATTATGTAGATATTTCCTTTTTTAAAAGGCCCTGTTTCTAAAT  150
      ||||||||||||||||||| |||||||||  ||||  |||| ||||||| 
seq2  TGCAGTCATTATGTAGATA-TTCCTTTTT--AAAG--CCTG-TTCTAAA-  135

seq1  TATATTGATAAATTTTATCTTTTCAGGTGAGATTTAAGGTCACAAACTTA  200
      |||| ||||||| |||||| ||||||||||||||||||||||||||||||
seq2  TATA-TGATAAA-TTTATC-TTTCAGGTGAGATTTAAGGTCACAAACTTA  182

seq1  GTGAAAAGCATACA-CACACAAACCTGCTCCCACTCACGCCCCACCTCCC  249
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTGAAAAGCATACACCACACAAACCTGCTCCCACTCACGCCCCACCTCCC  232

seq1  ACACTGATGGACATCCTACATCACATGATGTATCCTTGACAGTCAGTGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGATGGACATCCTACATCACATGATGTATCCTTGACAGTCAGTGAG  282

seq1  CCTACACTGCTCGGTCACCACCCAAAGCCACAGTTCTGTGTAGAAAGGGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACACTGCTCGGTCACCACCCAAAGCCACAGTTCTGTGTAGAAAGGGC  332

seq1  TCTGTCTTTAAAAGTTAGTTTGCACAATGGTCCACCAGAAACTTGAGAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTTAAAAGTTAGTTTGCACAATGGTCCACCAGAAACTTGAGAAT  382

seq1  TCAATTTGCTATAACATTAGCATTATATTTTTCATGGTTAGATCCCTAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTGCTATAACATTAGCATTATATTTTTCATGGTTAGATCCCTAAG  432

seq1  TCAGCCTACATAAACCCTCAACCTAACCCATAACAAGTCCAAGTAGATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTACATAAACCCTCAACCTAACCCATAACAAGTCCAAGTAGATAA  482

seq1  GATACTAAATTACAAAGCAGACACTCTCTCATCACTGAACTATCCAATCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTAAATTACAAAGCAGACACTCTCTCATCACTGAACTATCCAATCT  532

seq1  AGGTTCTTCTTCGTCCCTGGAAAATTAAAAAGTACAGTAAGAAGGCAAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTTCTTCGTCCCTGGAAAATTAAAAAGTACAGTAAGAAGGCAAGA  582

seq1  AAAACGTGAAGTAATAAAACTGATGCTATGAAGGATTTAATTCCTTAGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGTGAAGTAATAAAACTGATGCTATGAAGGATTTAATTCCTTAGGA  632

seq1  AATAGTAAGTTACACAAAGCAGAATTCAGGTCAAGGAGTTCCGACTCCGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTAAGTTACACAAAGCAGAATTCAGGTCAAGGAGTTCCGACTCCGA  682

seq1  TATGCCTGGATGATAAGAACCTTATACACCAGGCTCCTTAGAGATGGTAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTGGATGATAAGAACCTTATACACCAGGCTCCTTAGAGATGGTAG  732

seq1  GAAAGAAAATTCTGTACCATAACTCAAGTTTGGGCTTGCTAAGAAAGCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAATTCTGTACCATAACTCAAGTTTGGGCTTGCTAAGAAAGCTT  782

seq1  CTAGTGCTCACTAAGACTCACTTCCAGTTAGGCTCCATTCCCGTAACAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGCTCACTAAGACTCACTTCCAGTTAGGCTCCATTCCCGTAACAAA  832

seq1  AGGAGACAGCCCTGACTCAAAACCGGCCATTAGGCCCCTCCCCACATTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACAGCCCTGACTCAAAACCGGCCATTAGGCCCCTCCCCACATTGA  882

seq1  AGAATATGCCTCTAACAGGCAGCACCAGGGGACGGCTCAGGGTCACAACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATGCCTCTAACAGGCAGCACCAGGGGACGGCTCAGGGTCACAACT  932

seq1  ATCACTAAGACCTGGCCTGCTATTAAGTCTCCCCGGTTCTTATCAGTAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTAAGACCTGGCCTGCTATTAAGTCTCCCCGGTTCTTATCAGTAGA  982

seq1  AGCATAATTCTGCCAGGTGTGAAAGATGTCCCCAGGTAAAAACTGTCTGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAATTCTGCCAGGTGTGAAAGATGTCCCCAGGTAAAAACTGTCTGA  1032

seq1  AAAGAACAAAACTGACATGCTTAAATAACTCAGTCAATATCTTTGCTGTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACAAAACTGACATGCTTAAATAACTCAGTCAATATCTTTGCTGTG  1082

seq1  TTGAATTC  1107
      ||||||||
seq2  TTGAATTC  1090

seq1: chr8_23169964_23170934
seq2: B6Ng01-063D24.g_65_1034

seq1  GAATTCATCATATGCCTGCGACCTATACAAGTTTCAGTAAGTATTTGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCATATGCCTGCGACCTATACAAGTTTCAGTAAGTATTTGTTG  50

seq1  ATTGAAAACGCACATGAAGAAAAGAAAAACAGACCTGCTTTTCATGTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAACGCACATGAAGAAAAGAAAAACAGACCTGCTTTTCATGTTAA  100

seq1  ATATTCTACGCTGTTTGCATCTCTAAGAGGCTGCATTAATTAACCCCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTACGCTGTTTGCATCTCTAAGAGGCTGCATTAATTAACCCCCTG  150

seq1  TATTATTAAATGAATGCCTTCAAGGTACAGGACTTGGATGTAGACCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTAAATGAATGCCTTCAAGGTACAGGACTTGGATGTAGACCTTTT  200

seq1  GAGGAGCATTAGCCAGGCATTAGCGAGGTATTAGCACTCCCAGGAGCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGCATTAGCCAGGCATTAGCGAGGTATTAGCACTCCCAGGAGCAAC  250

seq1  TAGAGTTTTTATACAGCAAGCCCACGCTCAAGAGCTCTTTAATAAGGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTTTTATACAGCAAGCCCACGCTCAAGAGCTCTTTAATAAGGACC  300

seq1  GGGGAAAGTTCTGGGCTCGAAATCGTTGTACACCAGAGGGCTAGTGGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAGTTCTGGGCTCGAAATCGTTGTACACCAGAGGGCTAGTGGCAC  350

seq1  CCTTGATCTAGAGGGTTTTCCTCCCGGGTTCTCAGGGGTACGTGTCCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATCTAGAGGGTTTTCCTCCCGGGTTCTCAGGGGTACGTGTCCACA  400

seq1  GTCACGAGCCCTGGAGGAACCGAGGAGAAAAGCGCTTTGAGCAGGTGCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACGAGCCCTGGAGGAACCGAGGAGAAAAGCGCTTTGAGCAGGTGCGT  450

seq1  ACACGCTGCGGTCAGGCAAAGGAAACTTACTTTCCGACTGGCCTCTTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCTGCGGTCAGGCAAAGGAAACTTACTTTCCGACTGGCCTCTTTGG  500

seq1  CTGTGACCTGTCTCTCCTGTTCAGGCATCGTCCCCACAGACGCCAAGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACCTGTCTCTCCTGTTCAGGCATCGTCCCCACAGACGCCAAGTTC  550

seq1  TTCCTGGGATCCATCCCCGAGCCCAAAGGTCACCTGGTTGGGGGGAGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGGATCCATCCCCGAGCCCAAAGGTCACCTGGTTGGGGGGAGGGA  600

seq1  AGGGCGACTTTACAAGCCAGGGAGAGGAGGCGCGAAGAAGCGCATCCGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCGACTTTACAAGCCAGGGAGAGGAGGCGCGAAGAAGCGCATCCGTG  650

seq1  GTTCCTGGGGAACACAGGGCTCAGATCTCCCAGCCCCGGCGCTGCGGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGGGGAACACAGGGCTCAGATCTCCCAGCCCCGGCGCTGCGGACT  700

seq1  ACGGACAGCGAGGTCCGCGGTGCGCTGCAGATAGGGTGCAGCGAGGACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGACAGCGAGGTCCGCGGTGCGCTGCAGATAGGGTGCAGCGAGGACCA  750

seq1  CAGTCTCAGGACGCCCGCTCCAGCGCAGCCCCCTCTCCACCCCGCGCCCC  800
      |||||||||||||||||||||||||||||||||||| ||| |||||||||
seq2  CAGTCTCAGGACGCCCGCTCCAGCGCAGCCCCCTCTTCACTCCGCGCCCC  800

seq1  GCTACTGCGGCCGCTGGGGACTCGCCGACACCTCTG-AAAGAGCGGACTC  849
      ||||||||||| ||||||||||||||||| |||||| |||||||||||||
seq2  GCTACTGCGGCGGCTGGGGACTCGCCGACTCCTCTGAAAAGAGCGGACTC  850

seq1  TGTAC-TGGAAGATTAGCTCGTCGCCCGCCCGGACCTCCCATTGGGTCCC  898
      ||||| ||||||||||||||||||||||||||||||||| || |||||||
seq2  TGTACTTGGAAGATTAGCTCGTCGCCCGCCCGGACCTCCAATGGGGTCCC  900

seq1  AACCGGCTGGCAGCGCCGCGGTGGGGGCAGGGCTGGGCGCCCTCAAGGGG  948
       |||||||||||||||||||||||||||| |||||||||||| |||||||
seq2  -ACCGGCTGGCAGCGCCGCGGTGGGGGCA-GGCTGGGCGCCC-CAAGGGG  947

seq1  GCTTCCAGACGGGAGGGGGGGGA  971
      |||| ||||||| ||||||||||
seq2  GCTTTCAGACGGTAGGGGGGGGA  970