BAC Information

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BAC

Clone NameB6Ng01-063E22
Chromosome7 (Build37)8 (Build37)
Map Location 50,472,465 - 50,473,61364,307,698 - 64,307,993
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGprc2a-rs2, LOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503, BC063263, LOC100039449, EG637776, C330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620
Downstream geneZfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063E22.bB6Ng01-063E22.g
ACCDH883441DH883442
length1,123837
definitionDH883441|Mus musculus domesticus DNA, BAC clone: B6Ng01-063E22, 5' end.DH883442|Mus musculus domesticus DNA, BAC clone: B6Ng01-063E22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,472,465 - 50,473,613)(64,307,698 - 64,307,993)
sequence
gaattccactttctattttttaaagatttatttatttattatatataagt
agactctagctgtcttcaggcataccagaaaagagcttcagatctcacta
cagatggttgtaagccattaggtggttcatgggatttgaactcaggacct
ctgaaagaacagtcagtgatcttaaatgctgagccatctctccagcctga
gaattgcaccttcaatgtgtgtagaaaattgtgtttgaaatttgagggga
attgcattgaatttgtagattgcttttggtaccatggccatactaactat
gttttttggttgtctgtttttcaaaactggtttttttgagtgatgagctt
gtgttcttagatcttgttccatctaccaggcgcgccttgaactcagagag
ttctgcctggctctgcctctctgcctcttaagctctctgcctctgcattt
cccagtctttaagaattttatttgtagccaggcagtggaggcgcacaagc
ctttaatcccagcacttgggaggcagagtcaggctgatatttgagttaga
ggccaccctggtttacaaagtgagttcctggagaactagggctataaaga
gaaaccctgtctcaaaaaaacaaaacaaaacaaaaaaaaaggattaaaag
aagaagaaattcattgcttcctattaaagttctttaatattggtttctca
ttagaataatactttctaaatatttggcttcccttatgcttggaattaac
agttgcattgtaccattatatacctcatcctgcctgtgtggtccagtgac
ttgaaggcattcctgcaactctttcaggcttgacccttactaatctgtga
atggaaaaaagaccactgggtgagggtcctctgacttcatcccttttatt
gggcatttaaaatgaagtggggacttgagacaaattgacttcactgacca
ctctgatgctgctgtattcacagccagagagggctggggaaagaggagta
gcttcatgtttcacatattggtgtcatcacgatgagtagtcaggtcatca
aatttgatatcataaaagtctgactggcaaattgtcagtttcataactgg
gcatcaaacttgggtaagaactg
gaattctttgcgtgggcattttgggggttgaagatttactgttataaatt
cggctgataaattacaagcctctggcggggcgtggtgacgcacgccttta
atcccagcactcgggaggcagaggcaggcggatttctgagttccaggaca
gcctggtctacaaagtgagttccaggacagccagggctatacagagaaac
cctgtctcgaaaaaccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatta
caagcctctggagttgtcgttttttttaaggggctagggagttagagcca
gcagcagccagtttcagcaggctagctgcagggggcggatgacttgggaa
gtgccagtttcggcaggctagctgcagggggcggatgacttgggaagtgc
cagcagggaacctggactgacccgctgcttggggctccctatgggggtgg
ggaagccagtcatagtgtagattgttgttttataattacacactacaaca
cttaaaagaaaaaaaaaagataagtgttagatatattcttagcattacca
ttgtttgtaacctgcactgaaatcaatgccagcaggtatcaattacaaat
actttcttggttagggattcgaggatccagtatcccacttccctctctta
gtattgggatctggtctggcttgaacctatgcaagtcctgtgtgtgctcc
tttgtgcattcacatggtcttgtatctggaagaaaaattccttaaaggca
tccttcacttctggccatttaaatctgaccgcatcctgagccttgaggga
aggttttggcgaagacattccatttaggactgagcgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_50472465_50473613
seq2: B6Ng01-063E22.b_43_1165

seq1  GAATTCCACTTTCTATTTTTTAAAGATTTATTTATTTATTATATATAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTTCTATTTTTTAAAGATTTATTTATTTATTATATATAAGT  50

seq1  AGACTCTAGCTGTCTTCAGGCATACCAGAAAAGAGCTTCAGATCTCACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTAGCTGTCTTCAGGCATACCAGAAAAGAGCTTCAGATCTCACTA  100

seq1  CAGATGGTTGTAAGCCATTAGGTGGTTCATGGGATTTGAACTCAGGACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGTTGTAAGCCATTAGGTGGTTCATGGGATTTGAACTCAGGACCT  150

seq1  CTGAAAGAACAGTCAGTGATCTTAAATGCTGAGCCATCTCTCCAGCCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGAACAGTCAGTGATCTTAAATGCTGAGCCATCTCTCCAGCCTGA  200

seq1  GAATTGCACCTTCAATGTGTGTAGAAAATTGTGTTTGAAATTTGAGGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGCACCTTCAATGTGTGTAGAAAATTGTGTTTGAAATTTGAGGGGA  250

seq1  ATTGCATTGAATTTGTAGATTGCTTTTGGTACCATGGCCATACTAACTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATTGAATTTGTAGATTGCTTTTGGTACCATGGCCATACTAACTAT  300

seq1  GTTTTTTGGTTGTCTGTTTTTCAAAACTGGTTTTTTTGAGTGATGAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGGTTGTCTGTTTTTCAAAACTGGTTTTTTTGAGTGATGAGCTT  350

seq1  GTGTTCTTAGATCTTGTTCCATCTACCAGGCGCGCCTTGAACTCAGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTTAGATCTTGTTCCATCTACCAGGCGCGCCTTGAACTCAGAGAG  400

seq1  TTCTGCCTGGCTCTGCCTCTCTGCCTCTTAAGCTCTCTGCCTCTGCATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCTGGCTCTGCCTCTCTGCCTCTTAAGCTCTCTGCCTCTGCATTT  450

seq1  CCCAGTCTTTAAGAATTTTATTTGTAGCCAGGCAGTGGAGGCGCACAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTCTTTAAGAATTTTATTTGTAGCCAGGCAGTGGAGGCGCACAAGC  500

seq1  CTTTAATCCCAGCACTTGGGAGGCAGAGTCAGGCTGATATTTGAGTTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCCCAGCACTTGGGAGGCAGAGTCAGGCTGATATTTGAGTTAGA  550

seq1  GGCCACCCTGGTTTACAAAGTGAGTTCCTGGAGAACTAGGGCTATAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACCCTGGTTTACAAAGTGAGTTCCTGGAGAACTAGGGCTATAAAGA  600

seq1  GAAACCCTGTCTCAAAAAAACAAAACAAAACAAAAAAAAAGGATTAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCTGTCTCAAAAAAACAAAACAAAACAAAAAAAAAGGATTAAAAG  650

seq1  AAGAAGAAATTCATTGCTTCCTATTAAAGTTCTTTAATATTGGTTTCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAATTCATTGCTTCCTATTAAAGTTCTTTAATATTGGTTTCTCA  700

seq1  TTAGAATAATACTTTCTAAATATTTGGCTTCCCTTATGCTTGGAATTAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATAATACTTTCTAAATATTTGGCTTCCCTTATGCTTGGAATTAAC  750

seq1  AGTTGCATTGTACCATTATATACCTCATCCTGCCTGTGTGGTCCAGTGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCATTGTACCATTATATACCTCATCCTGCCTGTGTGGTCCAGTGAC  800

seq1  TTGAAGGCATTCCTGCAACTCTTTCAGGCTTGACCCTTACTAATCTGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTGAAGGCATTCCTGCAACTCTTTCAGGCTTGACCCTTACTAATCTGTG-  849

seq1  AATGGAAAAAAGACCACTGGGTGAGGGTCCTCTGACTTCCATCCCTTTTA  900
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AATGGAAAAAAGACCACTGGGTGAGGGTCCTCTGACTT-CATCCCTTTTA  898

seq1  TTGGGCATTTAAAAATGAAGT-GGGACTTGAGACAAAATTGACTTCACTG  949
      |||||||||| |||||||||| |||||||||||| |||||||||||||||
seq2  TTGGGCATTT-AAAATGAAGTGGGGACTTGAGAC-AAATTGACTTCACTG  946

seq1  ACCAACTCTGATGCTGCTGTATTCACAGCCCAGAGAGGGCTGGGGGGATA  999
      ||| |||||||||||||||||||||||| ||||||||||||||||     
seq2  ACC-ACTCTGATGCTGCTGTATTCACAG-CCAGAGAGGGCTGGGG-----  989

seq1  AGGGAGGAGTAGCTTTCATGTTTCACAATATTTGGTTGTCATTCACGATG  1049
      |  |||||||||| |||||||||||| |||||  | ||||| ||||||||
seq2  AAAGAGGAGTAGC-TTCATGTTTCAC-ATATT--GGTGTCA-TCACGATG  1034

seq1  AGTAGTCAGGTCATCAAATTTTGATAATCATTAAAAGTCCTGACTGGCAA  1099
      |||||||||||||||||| |||||| |||| ||||||| |||||||||||
seq2  AGTAGTCAGGTCATCAAA-TTTGAT-ATCA-TAAAAGT-CTGACTGGCAA  1080

seq1  ATTTGTCAGTTTCATAAACCTGGGCAATCAAAACTCTGGGTAAAGAACTG  1149
      | |||||||||||||||  |||||| ||| ||||| ||||| ||||||||
seq2  A-TTGTCAGTTTCATAA--CTGGGC-ATC-AAACT-TGGGT-AAGAACTG  1123

seq1: chr8_64307698_64307993
seq2: B6Ng01-063E22.g_145_587

seq1  GGCGTGGTAGCACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGG  50
      ||||||||  | ||||||||||||||||||||| ||||||||||||||||
seq2  GGCGTGGTGACGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGG  50

seq1  CGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGAC  100
      ||||||||||||||| ||| ||||||||||||||||||||||||||||||
seq2  CGGATTTCTGAGTTCCAGGACAGCCTGGTCTACAAAGTGAGTTCCAGGAC  100

seq1  AGCCAGAGCTTCACAGAGAAACCCTGTCTCGAAAAAAAAAAAAAAAAAAG  150
      |||||| |||  ||||||||||||||||||||||||  ||||||||||| 
seq2  AGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAA  150

seq1  AAAAAGAAAAAAAAAAAAAAAAGAA-------GAAAT-TCATTTCT----  188
      ||||| |||||||||||||  | ||       ||  | || ||| |    
seq2  AAAAAAAAAAAAAAAAAAATTACAAGCCTCTGGAGTTGTCGTTTTTTTTA  200

seq1  ----------GATTGAAACCCA------------------TGCCTTGCT-  209
                || | | | |||                   | || ||| 
seq2  AGGGGCTAGGGAGTTAGAGCCAGCAGCAGCCAGTTTCAGCAGGCTAGCTG  250

seq1  ----------ATG-CTAAGCAAGTACCACT------AGGCCA--TACA--  238
                ||| ||  | |||| ||| |      |||| |  | ||  
seq2  CAGGGGGCGGATGACTTGGGAAGTGCCAGTTTCGGCAGGCTAGCTGCAGG  300

seq1  --------------------TCCAGC------------------------  244
                           |||||                        
seq2  GGGCGGATGACTTGGGAAGTGCCAGCAGGGAACCTGGACTGACCCGCTGC  350

seq1  -------------------------CACCACTCACATTTTAAATCATGTC  269
                                 ||| ||| | | || ||  ||| 
seq2  TTGGGGCTCCCTATGGGGGTGGGGAAGCCAGTCATAGTGTAGAT--TGTT  398

seq1  ATCTT------------------AATTAAAAGAAAAAAAAAAGAT  296
       | ||                  | ||||||||||||||||||||
seq2  GTTTTATAATTACACACTACAACACTTAAAAGAAAAAAAAAAGAT  443