BAC Information

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BAC

Clone NameB6Ng01-064B13
Chromosome8 (Build37)
Map Location 102,663,881 - 102,793,625
singlet/doubletdoublet
Overlap geneLOC100042078
Upstream geneCdh8, A330008L17Rik, LOC667531, LOC100042069, LOC436054
Downstream geneLOC100042086, LOC100042092, LOC384895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064B13.bB6Ng01-064B13.g
ACCDH883987DH883988
length1,1231,064
definitionDH883987|Mus musculus domesticus DNA, BAC clone: B6Ng01-064B13, 5' end.DH883988|Mus musculus domesticus DNA, BAC clone: B6Ng01-064B13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,792,483 - 102,793,625)(102,663,881 - 102,664,969)
sequence
gaattcaatgtttttaaaagaaaagtaagtggaagttagaaacttgtcat
gtacttctaaaattaagagatgtattttagtgaatctggtcatgtttcta
agtcaaacattacatgaaaataattgaaaactcacacacactcacacact
taggtagtacagttaatgtagaccctgagatataaacatgactagaacag
atagaataaaaagaaaagtcatgtccattgctaaaattctcctgagtatt
caactgaaacagagctctaggcatagaaataaagtatatgtttaagatac
aattctgaacacagagatcctacaattatctttcacatttgtgtgatgtg
cacttagaaagcactttgatattgatcccatttttaattgtaatctgaaa
aagcgcctataagtttgtactctgtagaaacaaaatatcgaaccagacac
ttgcagagttacagagcaggaaaaagaggacacaaaactcagtttcctgg
tataacagtcaaagctcatacatagctgtcaaaaactagggatgttgcat
gtccatgaagtgctcttaaaattaatttcccatacaaataaagaatatgt
gtctctcacttgatattaataatttcctattagcaatatatcaaatattg
atctaaaacatgtctcagcacctgcatgaggagctttgttttcataaaaa
ttattgcctaaaatgccctattttgatgaagtttattttactgaccatgt
ataaaattcatctaccaaactcactatgacatcatattaagtcaggaatt
actctgatctttcttgataaagaaaaaagcctctgtagatagaactactg
tacagtttaaccaatatctcaatattatttaaatgatagtattgtaacta
tcttttgatggtgactcatatgcatacactgtaatgattacttatgagac
taaggatgattagtatatatgctaattgtaactaaatttcattttacatg
cagttagtataagtatttgagatttacttaaaattgaactttgtattcct
ttatacatgtaatggcagtgcccacagatacagaaaaagcacaattcctc
tactggagttatcccagtttaag
gaattcattaattagaatattcatgaaccttaatcgatgaggttctctgg
acaatgttctatagtgtgttaaatgatttagagaaaaagaactcctaagt
atgttcttcagaaagactgtgatattgggatataaaggatgaggttagac
tacaaaatgttttgttgatattattttttctgttcatccaattgtttctt
tcttacacgtgtggatagctgacattatttccaggaaattaggctgatta
ctttatcctgtattgatgtgaatggttttgggttggggaaccctgctatt
aagacagcagcccctcatgactggatggctggctctctgagctcagcaca
aaatggaggactccctttctcagaggagcttccttgtgtctacctctgtc
tgaagagtatctttgtctaaaaaagtgtttttgtctggagccacttgcag
acatctggctggccttgtctgtaaagtgtccgagtacagaactctctgca
aggctgtataactcagcacccatacccaactttggcttcctgcccacata
gtaattaggcactgtattataaccaatcagcccttttcacttgcttgatg
atatgaccaattagtcctttccacccttacctcttaacaaaacaaaacaa
aacaaaaaccaagcctttatattctctatccctgaaacaattaagtagac
tcatctcactccaacagtttccagaggtcattccactgtccaaaaactgc
ttccccaccctgcttcctttatctcagtgtggttgccaacagtttccaag
acaaagggttgaggggtgagttttgactagaagattcacataatgatatt
tacatataactcctctaatctttctgactttttgttgtttgttgttgttt
gttgttgtttgtctctcacagatttgggatatacagcataaggatgcacc
tacaatcttctatttccaagaatgttattctattggtgcaagccagacaa
caagtgtgtattaaggcttaaatgaatgatggataaatattgggagcaca
tgaaaaatgattca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_102792483_102793625
seq2: B6Ng01-064B13.b_46_1168 (reverse)

seq1  CTTATAACTGGGGATAACTCCAGTTAGAGGGAAATTGTTGCCTTTTTCTG  50
      |||| |||| ||||||||||||| ||||||  ||||||   |||||||||
seq2  CTTA-AACT-GGGATAACTCCAG-TAGAGG--AATTGT--GCTTTTTCTG  43

seq1  TATCTGTGGGCACTGCCATTACATGGTAATAAAGGAAATACATAGTTTTA  100
      |||||||||||||||||||||||||   ||||||| |||||| ||  || 
seq2  TATCTGTGGGCACTGCCATTACATG--TATAAAGG-AATACAAAG--TTC  88

seq1  AATTTTTAAAAGTAAATTCTTCAAATACTTATACTAAACTGCATGTAAAA  150
      ||||||   ||||||||   ||||||||||||||| ||||||||||||||
seq2  AATTTT---AAGTAAAT--CTCAAATACTTATACT-AACTGCATGTAAAA  132

seq1  TGAAATTTAGTTACAATTAGCATATATACTTAATCCTTCTTTAGTCTCAT  200
      ||||||||||||||||||||||||||||| |||| | || ||||||||||
seq2  TGAAATTTAGTTACAATTAGCATATATAC-TAAT-CATCCTTAGTCTCAT  180

seq1  AAGTAATCATTACAGTGTATGCATATGAGTCACCATCAAAAGATAGTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATCATTACAGTGTATGCATATGAGTCACCATCAAAAGATAGTTAC  230

seq1  AATACTATCATTTAAATAATATTGAGATATTGGTTAAACTGTACAGTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTATCATTTAAATAATATTGAGATATTGGTTAAACTGTACAGTAGT  280

seq1  TCTATCTACAGAGGCTTTTTTCTTTATCAAGAAAGATCAGAGTAATTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTACAGAGGCTTTTTTCTTTATCAAGAAAGATCAGAGTAATTCCT  330

seq1  GACTTAATATGATGTCATAGTGAGTTTGGTAGATGAATTTTATACATGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAATATGATGTCATAGTGAGTTTGGTAGATGAATTTTATACATGGT  380

seq1  CAGTAAAATAAACTTCATCAAAATAGGGCATTTTAGGCAATAATTTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAAATAAACTTCATCAAAATAGGGCATTTTAGGCAATAATTTTTAT  430

seq1  GAAAACAAAGCTCCTCATGCAGGTGCTGAGACATGTTTTAGATCAATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAAAGCTCCTCATGCAGGTGCTGAGACATGTTTTAGATCAATATT  480

seq1  TGATATATTGCTAATAGGAAATTATTAATATCAAGTGAGAGACACATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATATTGCTAATAGGAAATTATTAATATCAAGTGAGAGACACATATT  530

seq1  CTTTATTTGTATGGGAAATTAATTTTAAGAGCACTTCATGGACATGCAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTGTATGGGAAATTAATTTTAAGAGCACTTCATGGACATGCAAC  580

seq1  ATCCCTAGTTTTTGACAGCTATGTATGAGCTTTGACTGTTATACCAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTAGTTTTTGACAGCTATGTATGAGCTTTGACTGTTATACCAGGAA  630

seq1  ACTGAGTTTTGTGTCCTCTTTTTCCTGCTCTGTAACTCTGCAAGTGTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTTTTGTGTCCTCTTTTTCCTGCTCTGTAACTCTGCAAGTGTCTG  680

seq1  GTTCGATATTTTGTTTCTACAGAGTACAAACTTATAGGCGCTTTTTCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGATATTTTGTTTCTACAGAGTACAAACTTATAGGCGCTTTTTCAGA  730

seq1  TTACAATTAAAAATGGGATCAATATCAAAGTGCTTTCTAAGTGCACATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATTAAAAATGGGATCAATATCAAAGTGCTTTCTAAGTGCACATCA  780

seq1  CACAAATGTGAAAGATAATTGTAGGATCTCTGTGTTCAGAATTGTATCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATGTGAAAGATAATTGTAGGATCTCTGTGTTCAGAATTGTATCTT  830

seq1  AAACATATACTTTATTTCTATGCCTAGAGCTCTGTTTCAGTTGAATACTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATATACTTTATTTCTATGCCTAGAGCTCTGTTTCAGTTGAATACTC  880

seq1  AGGAGAATTTTAGCAATGGACATGACTTTTCTTTTTATTCTATCTGTTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAATTTTAGCAATGGACATGACTTTTCTTTTTATTCTATCTGTTCT  930

seq1  AGTCATGTTTATATCTCAGGGTCTACATTAACTGTACTACCTAAGTGTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGTTTATATCTCAGGGTCTACATTAACTGTACTACCTAAGTGTGT  980

seq1  GAGTGTGTGTGAGTTTTCAATTATTTTCATGTAATGTTTGACTTAGAAAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGTGTGAGTTTTCAATTATTTTCATGTAATGTTTGACTTAGAAAC  1030

seq1  ATGACCAGATTCACTAAAATACATCTCTTAATTTTAGAAGTACATGACAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCAGATTCACTAAAATACATCTCTTAATTTTAGAAGTACATGACAA  1080

seq1  GTTTCTAACTTCCACTTACTTTTCTTTTAAAAACATTGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTAACTTCCACTTACTTTTCTTTTAAAAACATTGAATTC  1123

seq1: chr8_102663881_102664969
seq2: B6Ng01-064B13.g_67_1130

seq1  GAATTCATTAATTAGAATATTCATGAACCTTAATCGATGAGGTTCTCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAATTAGAATATTCATGAACCTTAATCGATGAGGTTCTCTGG  50

seq1  ACAATGTTCTATAGTGTGTTAAATGATTTAGAGAAAAAGAACTCCTAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTTCTATAGTGTGTTAAATGATTTAGAGAAAAAGAACTCCTAAGT  100

seq1  ATGTTCTTCAGAAAGACTGTGATATTGGGATATAAAGGATGAGGTTAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTTCAGAAAGACTGTGATATTGGGATATAAAGGATGAGGTTAGAC  150

seq1  TACAAAATGTTTTGTTGATATTATTTTTTCTGTTCATCCAATTGTTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAATGTTTTGTTGATATTATTTTTTCTGTTCATCCAATTGTTTCTT  200

seq1  TCTTACACGTGTGGATAGCTGACATTATTTCCAGGAAATTAGGCTGATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACACGTGTGGATAGCTGACATTATTTCCAGGAAATTAGGCTGATTA  250

seq1  CTTTATCCTGTATTGATGTGAATGGTTTTGGGTTGGGGAACCCTGCTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCCTGTATTGATGTGAATGGTTTTGGGTTGGGGAACCCTGCTATT  300

seq1  AAGACAGCAGCCCCTCATGACTGGATGGCTGGCTCTCTGAGCTCAGCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGCAGCCCCTCATGACTGGATGGCTGGCTCTCTGAGCTCAGCACA  350

seq1  AAATGGAGGACTCCCTTTCTCAGAGGAGCTTCCTTGTGTCTACCTCTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAGGACTCCCTTTCTCAGAGGAGCTTCCTTGTGTCTACCTCTGTC  400

seq1  TGAAGAGTATCTTTGTCTAAAAAAGTGTTTTTGTCTGGAGCCACTTGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGTATCTTTGTCTAAAAAAGTGTTTTTGTCTGGAGCCACTTGCAG  450

seq1  ACATCTGGCTGGCCTTGTCTGTAAAGTGTCCGAGTACAGAACTCTCTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGGCTGGCCTTGTCTGTAAAGTGTCCGAGTACAGAACTCTCTGCA  500

seq1  AGGCTGTATAACTCAGCACCCATACCCAACTTTGGCTTCCTGCCCACATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTATAACTCAGCACCCATACCCAACTTTGGCTTCCTGCCCACATA  550

seq1  GTAATTAGGCACTGTATTATAACCAATCAGCCCTTTTCACTTGCTTGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTAGGCACTGTATTATAACCAATCAGCCCTTTTCACTTGCTTGATG  600

seq1  ATATGACCAATTAGTCCTTTCCACCCTTACCTCTTAACAAAACAAAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGACCAATTAGTCCTTTCCACCCTTACCTCTTAACAAAACAAAACAA  650

seq1  AACAAAAACCAAGCCTTTATATTCTCTATCCCTGAAACAATTAAGTAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAACCAAGCCTTTATATTCTCTATCCCTGAAACAATTAAGTAGAC  700

seq1  TCATCTCACTCCAACAGTTTCCAGAGGTCATTCCACTGTCCAAAAACTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCACTCCAACAGTTTCCAGAGGTCATTCCACTGTCCAAAAACTGC  750

seq1  TTCCCCACCCTGCTTCCTTTATCTCAGTGTGGTTGCCAACAGTTTCCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTCCCCACCCTGCTTCCTTTATCTCAGTGTGGTTGCCAACAGTTTCCAA-  799

seq1  GACAAAGGGTTGAGGGGTGAGTTTTGACTAGAAGATTCACATTAATGATA  850
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GACAAAGGGTTGAGGGGTGAGTTTTGACTAGAAGATTCACA-TAATGATA  848

seq1  TTTACATATAACTCCTCTAAATCTTTCTGACTTTTTTGTTTGTTTGTTTG  900
      |||||||||||||||||| |||||||||||||||||   |||||||||  
seq2  TTTACATATAACTCCTCT-AATCTTTCTGACTTTTT--GTTGTTTGTT--  893

seq1  TTTGTTTGTTTGTTTGTTTGGTCTCTCACAGATTTTGGGATTATACAAGC  950
       |||||||||   |||||| |||||||||||| ||||||| ||||| |||
seq2  GTTGTTTGTT--GTTGTTT-GTCTCTCACAGA-TTTGGGA-TATAC-AGC  937

seq1  ATAAAGGATGCAACATACAAATCTTCTATTCTCAAAGAATGTGTATTCTA  1000
      || |||||||| || ||| ||||||||||| || |||||||| |||||||
seq2  AT-AAGGATGC-ACCTAC-AATCTTCTATT-TCCAAGAATGT-TATTCTA  982

seq1  TTGGTGCAAGCCAGACAACAAAGTGGTGATTAAGGCATAAAAATGAATGA  1050
      ||||||||||||||||||| |||||   |||||||| |  ||||||||| 
seq2  TTGGTGCAAGCCAGACAAC-AAGTGTGTATTAAGGCTT--AAATGAATG-  1028

seq1  ATGGATAAAATATTGGGAAGCATAGAAAAAATGTATTCA  1089
      |||||| |||||||||| |||| |  ||||||| |||||
seq2  ATGGAT-AAATATTGGG-AGCACATGAAAAATG-ATTCA  1064