BAC Information

Click to search

BAC

Clone NameB6Ng01-064D02
Chromosome8 (Build37)
Map Location 52,477,985 - 52,610,334
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039954, LOC100039966, LOC667517
Downstream geneLOC623872, LOC100040220, LOC623935, 1190028D05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064D02.bB6Ng01-064D02.g
ACCDH884053DH884054
length1,1861,057
definitionDH884053|Mus musculus domesticus DNA, BAC clone: B6Ng01-064D02, 5' end.DH884054|Mus musculus domesticus DNA, BAC clone: B6Ng01-064D02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,477,985 - 52,479,184)(52,609,267 - 52,610,334)
sequence
gaattctatgaatttttaatagctattgagttttcatcattagggtaatc
aaataggatacggtatttctttaaaaataacatgatttttaaaactgttt
ataccaaagtaaacttttacaaaatgaagtatcgctagactaagttaatt
tccccttaagcatacctatagtttcatcttctgaaaagaaatattaataa
caaaagtgtatcaaatattttctgatttttcagtttgaatcaatcttact
actaaatatgactatttgaaaaaaaaaaaaaaagaccttcaatgtaacaa
atactattttcaagaccaacttattgagcagaaaacaaaaccaaatgttc
tgttcccagcatagccaatgtggttctttgtgcattttctattctattaa
ttatgctgaaaaaatttcttatttaccacaattaagatccatggatggag
cctaaaatatagatgtaaatacatgacaaaaataatttcctagtgactat
ttcattcctttattccttcctactttccttctatttttgctaattttctc
taagtctttttctgtgccttatggtcaatgccacagtgaagttatcaatt
ttggaatcatgtgaaatataggaggctaatatccacaataaatgcaatga
gacttcatgaaaggtattatatatccaaagagagaactagaacctaaata
catttctgaatataacagcaaagggatttctaaaagcaaaaggaaataaa
tgaaagtatactgagaagagcaggcaactaaagaatacagagcaggagaa
atattcttctcaagggaagaacatgccactttttagttcccaaacatgca
tgcatacaaataacagcattctgattgaagaggatgtacttaaacaatga
agtgtgtgtgtttgcatgtgtgtatctgtctctgtctctctacatctccc
tcccccctctctttctctgtgtgtgtatgtgtaacaaacacaagtgtgtg
tttactcaaaaactaatatttcaatgtactttagaataaaaatcaagaag
gcagtattaagcacaatgaaataagctgttaaagtttaaaaaaatatgag
ttaacggaataatttttttctatttagaatctagtaaatagaaaaaatgg
agtgagaaaaaagtatccacactgcctttctctctt
gaattcactatgcctgttaaacattcaagtggagatgtcaaaattcagtt
atataagtaataaattcagccatgagttctgaggttgaagatggagactt
gggacttgccagcctatttaaagtaaggagaatggatgagattgcagatt
gagtaccgaggcagaaaaatgtccaaggactaaattctggggcatctctg
catttatatgtcagagagaaatagataacacataaaagaaagggaaatga
ttaagtaggattgagtgtacacaggacatgggtaggtcaaataagatgtg
atctgaggttaataacggaaaggtcactgtagacaccaagatgaacagtt
tttgtgtggatccggagatgaattctcaaagcagtgagttcaacagcaaa
tgcagaaggaatggaagaagctcatacagaaaatcgctctgagacttttc
ctctaatgttaacataaagaaggacatataaaacacagcaattaatatac
caaaaaaaaaacaatagagtagcatgattatgtgacatctgaaatatcta
ctaaaacttttaaaacagtgatgttaggagagcagaatgaactaattctt
gttagcaacacatactagaagtaaacactgtaataatttattcaattgaa
tggaaaaacaaacactaactttcgatacatgtgtaaggtgataagcagag
aagtttgagcataatttactttacaaataaaatatttgaaatttcaacac
tgtttcttaacttttccttctgtgacaatgatttctctgaaaacattatc
atgacacagaataattctgtcatgcattttaaattttacataaaatattc
tctttgttgaagtttatcttatccattattggtacctaacatagtacaat
ttaatgtttgcctatctagatttgaaattgggatggagggatttatatga
tgttttcttaggactggggtatttttcaggtaaacaaaaaattgaaaagt
agtgtaagttttgaatagatgtgttgcataagatattcaggtttgaagca
taaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_52477985_52479184
seq2: B6Ng01-064D02.b_46_1231

seq1  GAATTCTATGAATTTTTAATAGCTATTGAGTTTTCATCATTAGGGTAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGAATTTTTAATAGCTATTGAGTTTTCATCATTAGGGTAATC  50

seq1  AAATAGGATACGGTATTTCTTTAAAAATAACATGATTTTTAAAACTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGATACGGTATTTCTTTAAAAATAACATGATTTTTAAAACTGTTT  100

seq1  ATACCAAAGTAAACTTTTACAAAATGAAGTATCGCTAGACTAAGTTAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAAAGTAAACTTTTACAAAATGAAGTATCGCTAGACTAAGTTAATT  150

seq1  TCCCCTTAAGCATACCTATAGTTTCATCTTCTGAAAAGAAATATTAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTAAGCATACCTATAGTTTCATCTTCTGAAAAGAAATATTAATAA  200

seq1  CAAAAGTGTATCAAATATTTTCTGATTTTTCAGTTTGAATCAATCTTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTGTATCAAATATTTTCTGATTTTTCAGTTTGAATCAATCTTACT  250

seq1  ACTAAATATGACTATTTGAAAAAAAAAAAAAAAGACCTTCAATGTAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATATGACTATTTGAAAAAAAAAAAAAAAGACCTTCAATGTAACAA  300

seq1  ATACTATTTTCAAGACCAACTTATTGAGCAGAAAACAAAACCAAATGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATTTTCAAGACCAACTTATTGAGCAGAAAACAAAACCAAATGTTC  350

seq1  TGTTCCCAGCATAGCCAATGTGGTTCTTTGTGCATTTTCTATTCTATTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCAGCATAGCCAATGTGGTTCTTTGTGCATTTTCTATTCTATTAA  400

seq1  TTATGCTGAAAAAATTTCTTATTTACCACAATTAAGATCCATGGATGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTGAAAAAATTTCTTATTTACCACAATTAAGATCCATGGATGGAG  450

seq1  CCTAAAATATAGATGTAAATACATGACAAAAATAATTTCCTAGTGACTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAATATAGATGTAAATACATGACAAAAATAATTTCCTAGTGACTAT  500

seq1  TTCATTCCTTTATTCCTTCCTACTTTCCTTCTATTTTTGCTAATTTTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCCTTTATTCCTTCCTACTTTCCTTCTATTTTTGCTAATTTTCTC  550

seq1  TAAGTCTTTTTCTGTGCCTTATGGTCAATGCCACAGTGAAGTTATCAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTTTTTCTGTGCCTTATGGTCAATGCCACAGTGAAGTTATCAATT  600

seq1  TTGGAATCATGTGAAATATAGGAGGCTAATATCCACAATAAATGCAATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATCATGTGAAATATAGGAGGCTAATATCCACAATAAATGCAATGA  650

seq1  GACTTCATGAAAGGTATTATATATCCAAAGAGAGAACTAGAACCTAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCATGAAAGGTATTATATATCCAAAGAGAGAACTAGAACCTAAATA  700

seq1  CATTTCTGAATATAACAGCAAAGGGATTTCTAAAAGCAAAAGGAAATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTGAATATAACAGCAAAGGGATTTCTAAAAGCAAAAGGAAATAAA  750

seq1  TGAAAGTATACTGAGAAGAGCAGGCAACTAAAGAATACAGAGCAGGAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTATACTGAGAAGAGCAGGCAACTAAAGAATACAGAGCAGGAGAA  800

seq1  ATATTCTTCTCAAGGGAAGAACATGCCACTTTTTAGTTCCCAAAACATGC  850
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATATTCTTCTCAAGGGAAGAACATGCCACTTTTTAGTTCCC-AAACATGC  849

seq1  ATGCATACAAATAACAGCATTCTGATTGAAGAGGATGTACTTAAACAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATACAAATAACAGCATTCTGATTGAAGAGGATGTACTTAAACAATG  899

seq1  AAGTGTGTGTGTTTGCATGTGTGTATCTGTCTCTGTCTCTCTACATCTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGTGTGTTTGCATGTGTGTATCTGTCTCTGTCTCTCTACATCTCC  949

seq1  CTCCCCCCTCTCTTTCTCTGTGTGTGTATGTGTACACAAACACAAGTGTG  1000
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTCCCCCCTCTCTTTCTCTGTGTGTGTATGTGTA-ACAAACACAAGTGTG  998

seq1  TGTTTTACTCAAAAAACTTAATTATTTCAATGTACTTTAGAATAAAGATC  1050
      || ||||||| |||||||  | |||||||||||||||||||||||| |||
seq2  TG-TTTACTC-AAAAACT--AATATTTCAATGTACTTTAGAATAAAAATC  1044

seq1  AAGATAGGCAGTATACAGCACAATGAAATAAGCTGTTAAAGTTTAAAATA  1100
      |||| |||||||||  |||||||||||||||||||||||||||||||| |
seq2  AAGA-AGGCAGTATTAAGCACAATGAAATAAGCTGTTAAAGTTTAAAA-A  1092

seq1  AATATGAGTATACGGAA-ATATTTTTTCTATTTAAGGGAATCTTAGTAAA  1149
      |||||||||  |||||| |  |||||||||||||   ||||| |||||||
seq2  AATATGAGTTAACGGAATAATTTTTTTCTATTTA---GAATC-TAGTAAA  1138

seq1  TTAGTAATAAATGAAGTGAG-AAAAAGTATCCACACTTTGGTCTTTCT-T  1197
       ||| || ||||| |||||| ||||||||||||||||   | |||||| |
seq2  -TAG-AAAAAATGGAGTGAGAAAAAAGTATCCACACT---GCCTTTCTCT  1183

seq1  CTT  1200
      |||
seq2  CTT  1186

seq1: chr8_52609267_52610334
seq2: B6Ng01-064D02.g_67_1123 (reverse)

seq1  TTTTTTATGCTTCCAAAAACTGAATATCTTATAGCAAACTACATCTATTC  50
      |||||||||||||  ||| ||||||||||||| ||||   ||||||||||
seq2  TTTTTTATGCTTC--AAACCTGAATATCTTAT-GCAA--CACATCTATTC  45

seq1  AAAACTATAACACATACTTTTCATATTTTTTGTTTACCCTGAAAAATACC  100
      |||||  | |||| ||||||||| |||||||||||| |||||||||||||
seq2  AAAAC--TTACAC-TACTTTTCA-ATTTTTTGTTTA-CCTGAAAAATACC  90

seq1  ACAGTCCTAAGAAAACATCATTATAAATCCCTCCATCCCAATTTCAAATC  150
       ||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCAGTCCTAAGAAAACATCA-TATAAATCCCTCCATCCCAATTTCAAATC  139

seq1  TAGATAGGCAAACATTAAATTGTACTATGTTAGGTACCAATAATGGATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGGCAAACATTAAATTGTACTATGTTAGGTACCAATAATGGATAA  189

seq1  GATAAACTTCAACAAAGAGAATATTTTATGTAAAATTTAAAATGCATGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACTTCAACAAAGAGAATATTTTATGTAAAATTTAAAATGCATGAC  239

seq1  AGAATTATTCTGTGTCATGATAATGTTTTCAGAGAAATCATTGTCACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTATTCTGTGTCATGATAATGTTTTCAGAGAAATCATTGTCACAGA  289

seq1  AGGAAAAGTTAAGAAACAGTGTTGAAATTTCAAATATTTTATTTGTAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAGTTAAGAAACAGTGTTGAAATTTCAAATATTTTATTTGTAAAG  339

seq1  TAAATTATGCTCAAACTTCTCTGCTTATCACCTTACACATGTATCGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATGCTCAAACTTCTCTGCTTATCACCTTACACATGTATCGAAAG  389

seq1  TTAGTGTTTGTTTTTCCATTCAATTGAATAAATTATTACAGTGTTTACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTTTGTTTTTCCATTCAATTGAATAAATTATTACAGTGTTTACTT  439

seq1  CTAGTATGTGTTGCTAACAAGAATTAGTTCATTCTGCTCTCCTAACATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTATGTGTTGCTAACAAGAATTAGTTCATTCTGCTCTCCTAACATCA  489

seq1  CTGTTTTAAAAGTTTTAGTAGATATTTCAGATGTCACATAATCATGCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTAAAAGTTTTAGTAGATATTTCAGATGTCACATAATCATGCTAC  539

seq1  TCTATTGTTTTTTTTTTGGTATATTAATTGCTGTGTTTTATATGTCCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGTTTTTTTTTTGGTATATTAATTGCTGTGTTTTATATGTCCTTC  589

seq1  TTTATGTTAACATTAGAGGAAAAGTCTCAGAGCGATTTTCTGTATGAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTTAACATTAGAGGAAAAGTCTCAGAGCGATTTTCTGTATGAGCT  639

seq1  TCTTCCATTCCTTCTGCATTTGCTGTTGAACTCACTGCTTTGAGAATTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCATTCCTTCTGCATTTGCTGTTGAACTCACTGCTTTGAGAATTCA  689

seq1  TCTCCGGATCCACACAAAAACTGTTCATCTTGGTGTCTACAGTGACCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCGGATCCACACAAAAACTGTTCATCTTGGTGTCTACAGTGACCTTT  739

seq1  CCGTTATTAACCTCAGATCACATCTTATTTGACCTACCCATGTCCTGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTATTAACCTCAGATCACATCTTATTTGACCTACCCATGTCCTGTGT  789

seq1  ACACTCAATCCTACTTAATCATTTCCCTTTCTTTTATGTGTTATCTATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCAATCCTACTTAATCATTTCCCTTTCTTTTATGTGTTATCTATTT  839

seq1  CTCTCTGACATATAAATGCAGAGATGCCCCAGAATTTAGTCCTTGGACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGACATATAAATGCAGAGATGCCCCAGAATTTAGTCCTTGGACAT  889

seq1  TTTTCTGCCTCGGTACTCAATCTGCAATCTCATCCATTCTCCTTACTTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGCCTCGGTACTCAATCTGCAATCTCATCCATTCTCCTTACTTTA  939

seq1  AATAGGCTGGCAAGTCCCAAGTCTCCATCTTCAACCTCAGAACTCATGGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGCTGGCAAGTCCCAAGTCTCCATCTTCAACCTCAGAACTCATGGC  989

seq1  TGAATTTATTACTTATATAACTGAATTTTGACATCTCCACTTGAATGTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTATTACTTATATAACTGAATTTTGACATCTCCACTTGAATGTTT  1039

seq1  AACAGGCATAGTGAATTC  1068
      ||||||||||||||||||
seq2  AACAGGCATAGTGAATTC  1057