BAC Information

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BAC

Clone NameB6Ng01-066J18
Chromosome8 (Build37)
Map Location 59,965,337 - 60,123,628
singlet/doubletdoublet
Overlap geneSap30, Hmgb2, LOC547012, Galnt7, LOC100040634
Upstream geneBC088983, Fbxo8, LOC100040431, EG624433, LOC654355, LOC100040515, Hand2, Scrg1
Downstream geneLOC100040711, 4930431L04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066J18.bB6Ng01-066J18.g
ACCDH885741DH885742
length1,1301,089
definitionDH885741|Mus musculus domesticus DNA, BAC clone: B6Ng01-066J18, 5' end.DH885742|Mus musculus domesticus DNA, BAC clone: B6Ng01-066J18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,122,493 - 60,123,628)(59,965,337 - 59,966,439)
sequence
gaattcatcgtctgaaccctcggattcattcagtctcctagtcgctctgt
tgctagccaagcaagcccctggtacatgggagcctgagtgttttgagaaa
tagaaaggagatcagtgcagaataaacttgatgaccttagagatgtagtc
agagcacttgtctgcagggtagctcagtgggctgttactaaagtgatggc
ttcagtttctattccttgtccttcagccattactcccccttccctttcaa
gtgtcctgggttgaaggataaacaggtgactatctcagttccgagcccga
gggtttagataaaataaaatgacacatacacctgtgcggcagatttggca
gccagatgtaaacagctgcagcagctgagataagaactatattagccaac
cccactagggcttgtgggatctcagagaaccagcgtctagattaattgaa
gttgggtgtcagcacagtgcttgttttaaaaggggacgagttggatatac
tgtgacaaggacgcaggaacaaagtgtgtgaaaacataaaagaccacagc
cagtcctggagagcctacagagatgagcctcgagagagagtgaatgatac
gtgtggtcagaggtggggggcaaggaaaagtctggaaacagtgcaggcta
aatgctagtaggagattatcgtctctaggctaggatgaggcttacccagg
agacgggcacagagacggaaaacaaggtgacattactggaatagacctgc
tccaggagaggatgagtgcttgatggagtgagaagagggtgctgatgact
tcaagactacagcggagtagcactctcacagaagcgtggagacggtaact
taagggccatcatcagactcacaggccacagtattgacacaggctgggtc
agaaacacatggcagcagcggtggaaacactacctcccagtcaagcagcc
tgtagtgtttcagccaagagagggagtgcagggcttttgtaacatcttca
acaaatctcagtaaatagcgagacttgaaactggctcccatgaagaagct
gaagtggtagaggtcattccagaactacgttaggaggccctgaggatggt
aagaagcttttacttacagtcgtaaggaac
gaattctctgaaacctcatagctggccaaaacagcagacgtgcataaaga
cagaaaaagaaatcccgatggctgccgagagggctgtaaaaccgcagagg
cttatttgcagccttggttcggagcagctgcccgaagagctgacaccgca
aacaacgtttacaatcatctatctccctgtaaggcaactggtgagctcag
cttgcttgtctgtgttcaagagaaagagaacaacgaggaggaaagaaaaa
aagaaaagacaaaaaggaaaaaaagagagagagagagaattgtggggtcc
agccagactctactttccctagaggagcgaagctgctccctagggcagac
accggctctggcagcaaaacaaaggcgcctccattccagaagggactgcc
cggctgcgagaaaactactccgggccctcggtgctgcggtcccctttgtt
tcgtttccagatcgcagcaaaggaggaagagggaagcctggcgtgggaga
cacgcgaggcagcgggagtccgggcgaggggcggaggagccccgcaccac
tgcgcgagcgcgcgctggggaaggtggccggagttgcagggactttgttt
caatcagagaaccactaatcccacctgcaacccaatccccgagactcgtg
aaccccgccaaccatccggcgaggcacgcaggatagggcagggcggtccc
tgggccacttacactcttatccagctcgatcttcaccttcttctgagaga
tgctcttctggatccttttgctgaagctggcgttgcctgccgcgcgcccg
caccgctcaccgtcctcccgcaaacaacagagttgcccagggccgggacc
ggccgctccaggtggcccagaagctgacactgcaccggcaccgggtacct
ctgccctaccgccggctgcgttcccatccccgccgaggcggcggcagcgc
agcagcgacaccgcggccacgcggcggccgcgtcccgctcggctcatctc
tcggagtggagcgttcatgtctgccagtcggggcgccggcgctcgctaaa
gagcccggtcgcgcgccgcttcgctccttccctgggcgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_60122493_60123628
seq2: B6Ng01-066J18.b_47_1176 (reverse)

seq1  GTTCCTCTACGACTGTAAGTAGAAGCTTTCTAACAATCCTCCAGCGCCT-  49
      |||||| |||||||||||||| |||| |||| || ||||| ||| |||| 
seq2  GTTCCT-TACGACTGTAAGTAAAAGC-TTCTTACCATCCT-CAGGGCCTC  47

seq1  CTTACGTAGTTCCTGGAATGAACTTCTTACCACTTCAGCTTCTTCATGTG  99
      || |||||||| ||||||||| ||   ||||||||||||||||||||| |
seq2  CTAACGTAGTT-CTGGAATGACCT--CTACCACTTCAGCTTCTTCATGGG  94

seq1  AGCCAGTTTTCAAGTCTCGCTATTTACTGAGATTTGTTGAAGATGTTACA  149
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAG-TTTCAAGTCTCGCTATTTACTGAGATTTGTTGAAGATGTTACA  143

seq1  TAGGCCCTGCACTCCCTCTCTTGGCTGAAACACTACAGGCTGCTTGACTG  199
       | |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCTGCACTCCCTCTCTTGGCTGAAACACTACAGGCTGCTTGACTG  193

seq1  GGAGGTAGTGTTTCCACCGCTGCTGCCATGTGTTTCTGACCCAGCCTGTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTAGTGTTTCCACCGCTGCTGCCATGTGTTTCTGACCCAGCCTGTG  243

seq1  TCAATACTGTGGCCTGTGAGTCTGATGATGGCCCTTAAGTTACCGTCTCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATACTGTGGCCTGTGAGTCTGATGATGGCCCTTAAGTTACCGTCTCC  293

seq1  ACGCTTCTGTGAGAGTGCTACTCCGCTGTAGTCTTGAAGTCATCAGCACC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTTCTGTGAGAGTGCTACTCCGCTGTAGTCTTGAAGTCATCAGCACC  343

seq1  CTCTTCTCACTCCATCAAGCACTCATCCTCTCCTGGAGCAGGTCTATTCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTCACTCCATCAAGCACTCATCCTCTCCTGGAGCAGGTCTATTCC  393

seq1  AGTAATGTCACCTTGTTTTCCGTCTCTGTGCCCGTCTCCTGGGTAAGCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGTCACCTTGTTTTCCGTCTCTGTGCCCGTCTCCTGGGTAAGCCT  443

seq1  CATCCTAGCCTAGAGACGATAATCTCCTACTAGCATTTAGCCTGCACTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTAGCCTAGAGACGATAATCTCCTACTAGCATTTAGCCTGCACTGT  493

seq1  TTCCAGACTTTTCCTTGCCCCCCACCTCTGACCACACGTATCATTCACTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGACTTTTCCTTGCCCCCCACCTCTGACCACACGTATCATTCACTC  543

seq1  TCTCTCGAGGCTCATCTCTGTAGGCTCTCCAGGACTGGCTGTGGTCTTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCGAGGCTCATCTCTGTAGGCTCTCCAGGACTGGCTGTGGTCTTTT  593

seq1  ATGTTTTCACACACTTTGTTCCTGCGTCCTTGTCACAGTATATCCAACTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTCACACACTTTGTTCCTGCGTCCTTGTCACAGTATATCCAACTC  643

seq1  GTCCCCTTTTAAAACAAGCACTGTGCTGACACCCAACTTCAATTAATCTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTTTTAAAACAAGCACTGTGCTGACACCCAACTTCAATTAATCTA  693

seq1  GACGCTGGTTCTCTGAGATCCCACAAGCCCTAGTGGGGTTGGCTAATATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCTGGTTCTCTGAGATCCCACAAGCCCTAGTGGGGTTGGCTAATATA  743

seq1  GTTCTTATCTCAGCTGCTGCAGCTGTTTACATCTGGCTGCCAAATCTGCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTATCTCAGCTGCTGCAGCTGTTTACATCTGGCTGCCAAATCTGCC  793

seq1  GCACAGGTGTATGTGTCATTTTATTTTATCTAAACCCTCGGGCTCGGAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGTGTATGTGTCATTTTATTTTATCTAAACCCTCGGGCTCGGAAC  843

seq1  TGAGATAGTCACCTGTTTATCCTTCAACCCAGGACACTTGAAAGGGAAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATAGTCACCTGTTTATCCTTCAACCCAGGACACTTGAAAGGGAAGG  893

seq1  GGGAGTAATGGCTGAAGGACAAGGAATAGAAACTGAAGCCATCACTTTAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTAATGGCTGAAGGACAAGGAATAGAAACTGAAGCCATCACTTTAG  943

seq1  TAACAGCCCACTGAGCTACCCTGCAGACAAGTGCTCTGACTACATCTCTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCCCACTGAGCTACCCTGCAGACAAGTGCTCTGACTACATCTCTA  993

seq1  AGGTCATCAAGTTTATTCTGCACTGATCTCCTTTCTATTTCTCAAAACAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATCAAGTTTATTCTGCACTGATCTCCTTTCTATTTCTCAAAACAC  1043

seq1  TCAGGCTCCCATGTACCAGGGGCTTGCTTGGCTAGCAACAGAGCGACTAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTCCCATGTACCAGGGGCTTGCTTGGCTAGCAACAGAGCGACTAG  1093

seq1  GAGACTGAATGAATCCGAGGGTTCAGACGATGAATTC  1136
      |||||||||||||||||||||||||||||||||||||
seq2  GAGACTGAATGAATCCGAGGGTTCAGACGATGAATTC  1130

seq1: chr8_59965337_59966439
seq2: B6Ng01-066J18.g_68_1156

seq1  GAATTCTCTGAAACCTCATAGCTGGCCAAAACAGCAGACGTGCATAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAAACCTCATAGCTGGCCAAAACAGCAGACGTGCATAAAGA  50

seq1  CAGAAAAAGAAATCCCGATGGCTGCCGAGAGGGCTGTAAAACCGCAGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAAGAAATCCCGATGGCTGCCGAGAGGGCTGTAAAACCGCAGAGG  100

seq1  CTTATTTGCAGCCTTGGTTCGGAGCAGCTGCCCGAAGAGCTGACACCGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTGCAGCCTTGGTTCGGAGCAGCTGCCCGAAGAGCTGACACCGCA  150

seq1  AACAACGTTTACAATCATCTATCTCCCTGTAAGGCAACTGGTGAGCTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACGTTTACAATCATCTATCTCCCTGTAAGGCAACTGGTGAGCTCAG  200

seq1  CTTGCTTGTCTGTGTTCAAGAGAAAGAGAACAACGAGGAGGAAAGAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTGTCTGTGTTCAAGAGAAAGAGAACAACGAGGAGGAAAGAAAAA  250

seq1  AAGAAAAGACAAAAAGGAAAAAAAGAGAGAGAGAGAGAATTGTGGGGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGACAAAAAGGAAAAAAAGAGAGAGAGAGAGAATTGTGGGGTCC  300

seq1  AGCCAGACTCTACTTTCCCTAGAGGAGCGAAGCTGCTCCCTAGGGCAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGACTCTACTTTCCCTAGAGGAGCGAAGCTGCTCCCTAGGGCAGAC  350

seq1  ACCGGCTCTGGCAGCAAAACAAAGGCGCCTCCATTCCAGAAGGGACTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGCTCTGGCAGCAAAACAAAGGCGCCTCCATTCCAGAAGGGACTGCC  400

seq1  CGGCTGCGAGAAAACTACTCCGGGCCCTCGGTGCTGCGGTCCCCTTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTGCGAGAAAACTACTCCGGGCCCTCGGTGCTGCGGTCCCCTTTGTT  450

seq1  TCGTTTCCAGATCGCAGCAAAGGAGGAAGAGGGAAGCCTGGCGTGGGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTTCCAGATCGCAGCAAAGGAGGAAGAGGGAAGCCTGGCGTGGGAGA  500

seq1  CACGCGAGGCAGCGGGAGTCCGGGCGAGGGGCGGAGGAGCCCCGCACCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCGAGGCAGCGGGAGTCCGGGCGAGGGGCGGAGGAGCCCCGCACCAC  550

seq1  TGCGCGAGCGCGCGCTGGGGAAGGTGGCCGGAGTTGCAGGGACTTTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCGAGCGCGCGCTGGGGAAGGTGGCCGGAGTTGCAGGGACTTTGTTT  600

seq1  CAATCAGAGAACCACTAATCCCACCTGCAACCCAATCCCCGAGACTCGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGAGAACCACTAATCCCACCTGCAACCCAATCCCCGAGACTCGTG  650

seq1  AACCCCGCCAACCATCCGGCGAGGCACGCAGGATAGGGCAGGGCGGTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCGCCAACCATCCGGCGAGGCACGCAGGATAGGGCAGGGCGGTCCC  700

seq1  TGGGCCACTTACACTCTTATCCAGCTCGATCTTCACCTTCTTCTGAGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCACTTACACTCTTATCCAGCTCGATCTTCACCTTCTTCTGAGAGA  750

seq1  TGCTCTTCTGGATCCTTTTGCTGAAGCTGGCGTTGCCTGCCGCGCGCCCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTCTGGATCCTTTTGCTGAAGCTGGCGTTGCCTGCCGCGCGCCCG  800

seq1  CACCGCTCACCGTCCTCCCGCAAACAACAGAGTTGCCCAGGGCCGGGACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGCTCACCGTCCTCCCGCAAACAACAGAGTTGCCCAGGGCCGGGACC  850

seq1  GGCCGCTCCAGGTGGCCCAGAAGCTGACACTGCACCGGCACCGGGTACCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGCTCCAGGTGGCCCAGAAGCTGACACTGCACCGGCACCGGGTACCT  900

seq1  CTGCCCCACCGCCGGCTGCGTTCCCATTCCCCGCCGAGGCGGCGGCAGCC  950
      |||||| ||||||||||||||||||| ||||||||||||||||||||| |
seq2  CTGCCCTACCGCCGGCTGCGTTCCCA-TCCCCGCCGAGGCGGCGGCAG-C  948

seq1  GCAGCAGCGACCACCGCGGCCACGGCGGCGGCCGCGTCCCCGCCTCGGCT  1000
      |||||||||| |||||||||||| ||||||||||||||||   |||||||
seq2  GCAGCAGCGA-CACCGCGGCCAC-GCGGCGGCCGCGTCCC--GCTCGGCT  994

seq1  CATCTCCTCCGGAGTGAAGCCGTTCATGTCTGCCAGTTCGGGGGCGCCGG  1050
      ||||||   ||||||| || |||||||||||||||||   ||||||||||
seq2  CATCTC--TCGGAGTGGAG-CGTTCATGTCTGCCAGT--CGGGGCGCCGG  1039

seq1  CGC-CGCTACAGAGCCCCGCTCGCCGCGCCGCTCCGCCTCCTTCCCCTGG  1099
      ||| ||||| |||| |||| ||| ||||||||| || |||||| ||||||
seq2  CGCTCGCTAAAGAG-CCCGGTCG-CGCGCCGCTTCG-CTCCTT-CCCTGG  1085

seq1  GCGG  1103
      ||||
seq2  GCGG  1089