BAC Information

Click to search

BAC

Clone NameB6Ng01-068K02
Chromosome8 (Build37)
Map Location 113,349,099 - 113,479,246
singlet/doubletdoublet
Overlap geneSf3b3, Cog4, Fuk, St3gal2
Upstream geneAp1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546, Hydin, LOC672398, Vac14, BC060632, 2010004A03Rik
Downstream geneDdx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59, Znrf1, Ldhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068K02.bB6Ng01-068K02.g
ACCDH887161DH887162
length1,1741,199
definitionDH887161|Mus musculus domesticus DNA, BAC clone: B6Ng01-068K02, 5' end.DH887162|Mus musculus domesticus DNA, BAC clone: B6Ng01-068K02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,349,099 - 113,350,287)(113,478,033 - 113,479,246)
sequence
gaattctttaccaaatattcactagaagatgaggatgaggtacaaaacaa
gctatttggctttcaagagatttcacatctgtaatctgaattagatttcc
tagtttttgtccttaatctttaaaaaaggggccaaactgtcttgtttgtg
gacacttcagagtcccaattctctttcttgtgaatccatgcatgcttaag
atacatacactgacaacactgcctaagcacaacaacagaaccccacccca
aggaccataatggaagataacacagggccagcagaacaaaacaagtaaca
tacaggatccatctcgaaatagaccagctctcccccagtcagggcgatca
ccacttgtcgctggttcactgcacacttcacaatcgttttcttgccggga
gtcttccactcattaactcttttatctgctcgtatgtgtcggatgccatc
tggatacacctagaagtcagtcaaagaagaacatctaactagcaatctga
ttgtcacccagaatggccctcacactggcacactgggaccacacaaatga
ggcactgcttgtttttgaaatgttcatgctttgccacctcagttgagaaa
ggtcccaagcccacatgttaatgataaagatgagaaaagcagtgataggg
aatgaccaacagggaggaaatgttaggcttcaaattttcctaactgccga
gttattcaaagcctgaaagggatgaattctcagtacccctttttatgttg
ataagacattagaccctcccctcaggtttttctggaaggtgagaatgaag
aaacatgaattcaagcacaccacaaaacaagagaaggatgggcaaaggat
gggcaaaggacggacggccaaggcacgctgaggaggtgcacgctcacctg
caccagtgcatcatctcttaacaaggagcagacaaggttggagtggtgcc
caagaagcagagtcagtcacttctttcacagtctcttcgatagatagcac
aagtgtgcatcacgaaagacacaatgatgtaggcatcaactcatctggaa
aaagaaacagagagctgttagaaatttcaaatttacttgccattagaagc
agttgagacacaaccgtttagaacctttctaaccttctatggtgcagtcc
tcacacatgcccaccacaaacaga
gaattctttaccggcgtctggcctcctggggcacctggcatgcacacgat
atacagatatacacgcagacaaaacattcatatgcataaaatgaaaataa
atacgtcttttaagagagaacaggaaagaacaagccccctgtcccctcag
tttgtgatggctcaaatttcttcagtgaagcgaaaccccagagccatcag
ggaccagtattagcacgatataatagggaagacattattctagatcagga
aaatgatgcttatagatgtgaaagcacctgcttaaggccatgaccttatg
agtggcagtgagctttgagacctgatctcgctcaatgcctgagacgagac
ggagtgctagaagaaacctgtgagtcactgcagctgcacaaggctcaggg
aggaagtgaaagaacggcagaggtgctgagatagctcagaaggaacacgt
tcttcctgccacacctactgacccaaattcaatccctgggacccacatag
gagaagaaaagaaccgacccccttgcctggtgtgttggcttagaccttta
atcccagcactcaggaggcagaggaaggtagatctttatgagtcggaggc
cagcctggtctacaaagcaagttccaggagagtcagggctctgttacaaa
gagaaaccttgcctcacaaaacaaaacaaaacaaaacaaaacaaaaactg
gctcccttaagtttttctctgatgtccaaaatatacatacacaaataatt
aaataagtaccattttttttgaagcttcaagccaggcaggtacatgccta
taatcctagcactcggaacataaaggcaagtgaatcatttgagtttaagc
cattgcagtagcttgagtaagaatggcctacacatcatagagatgaatgc
ttagtcaccagggagtagcacaatttgaagggatagaagtggtcttagtt
agggttttactgctgtgaacagacaccatgactcaggcaagtcttataag
gacacatttaatttggggctggcttacaggtctgagattcagtcatttca
tcaggtggggagccagcagcatctaggtagacatgatgcaggccgagctg
agagtttctacatctcactgagggctgctagcagaatctggctccaggca
ctagagagtgggttctagccattccatgggtacacctcactccaacaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_113349099_113350287
seq2: B6Ng01-068K02.b_43_1216

seq1  GAATTCTTTACCAAATATTCACTAGAAGATGAGGATGAGGTACAAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACCAAATATTCACTAGAAGATGAGGATGAGGTACAAAACAA  50

seq1  GCTATTTGGCTTTCAAGAGATTTCACATCTGTAATCTGAATTAGATTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTGGCTTTCAAGAGATTTCACATCTGTAATCTGAATTAGATTTCC  100

seq1  TAGTTTTTGTCCTTAATCTTTAAAAAAGGGGCCAAACTGTCTTGTTTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTTGTCCTTAATCTTTAAAAAAGGGGCCAAACTGTCTTGTTTGTG  150

seq1  GACACTTCAGAGTCCCAATTCTCTTTCTTGTGAATCCATGCATGCTTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTCAGAGTCCCAATTCTCTTTCTTGTGAATCCATGCATGCTTAAG  200

seq1  ATACATACACTGACAACACTGCCTAAGCACAACAACAGAACCCCACCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACACTGACAACACTGCCTAAGCACAACAACAGAACCCCACCCCA  250

seq1  AGGACCATAATGGAAGATAACACAGGGCCAGCAGAACAAAACAAGTAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCATAATGGAAGATAACACAGGGCCAGCAGAACAAAACAAGTAACA  300

seq1  TACAGGATCCATCTCGAAATAGACCAGCTCTCCCCCAGTCAGGGCGATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGATCCATCTCGAAATAGACCAGCTCTCCCCCAGTCAGGGCGATCA  350

seq1  CCACTTGTCGCTGGTTCACTGCACACTTCACAATCGTTTTCTTGCCGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGTCGCTGGTTCACTGCACACTTCACAATCGTTTTCTTGCCGGGA  400

seq1  GTCTTCCACTCATTAACTCTTTTATCTGCTCGTATGTGTCGGATGCCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCACTCATTAACTCTTTTATCTGCTCGTATGTGTCGGATGCCATC  450

seq1  TGGATACACCTAGAAGTCAGTCAAAGAAGAACATCTAACTAGCAATCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATACACCTAGAAGTCAGTCAAAGAAGAACATCTAACTAGCAATCTGA  500

seq1  TTGTCACCCAGAATGGCCCTCACACTGGCACACTGGGACCACACAAATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACCCAGAATGGCCCTCACACTGGCACACTGGGACCACACAAATGA  550

seq1  GGCACTGCTTGTTTTTGAAATGTTCATGCTTTGCCACCTCAGTTGAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGCTTGTTTTTGAAATGTTCATGCTTTGCCACCTCAGTTGAGAAA  600

seq1  GGTCCCAAGCCCACATGTTAATGATAAAGATGAGAAAAGCAGTGATAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCAAGCCCACATGTTAATGATAAAGATGAGAAAAGCAGTGATAGGG  650

seq1  AATGACCAACAGGGAGGAAATGTTAGGCTTCAAATTTTCCTAACTGCCGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCAACAGGGAGGAAATGTTAGGCTTCAAATTTTCCTAACTGCCGA  700

seq1  GTTATTCAAAGCCTGAAAGGGATGAATTCTCAGTACCCCTTTTTATGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCAAAGCCTGAAAGGGATGAATTCTCAGTACCCCTTTTTATGTTG  750

seq1  ATAAGACATTAGACCCTCCCCTCAGG-TTTTCTGGAAGGTGAGAATGAAG  799
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATAAGACATTAGACCCTCCCCTCAGGTTTTTCTGGAAGGTGAGAATGAAG  800

seq1  AAACATGAATTCAAGCACACCACAAAACAAGAGAAGGATGGGCAAAGGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGAATTCAAGCACACCACAAAACAAGAGAAGGATGGGCAAAGGAT  850

seq1  GGGCAAAGGACGGACGGCCAAGGCACGCTGAGGAGGTGCACGCTCACCTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAAGGACGGACGGCCAAGGCACGCTGAGGAGGTGCACGCTCACCTG  900

seq1  CACCAGTGCATCATCTCCTAACAAGGAGCAGGACAAGGTTGGAGTGGTGC  949
      ||||||||||||||||| |||||||||||| |||||||||||||||||||
seq2  CACCAGTGCATCATCTCTTAACAAGGAGCA-GACAAGGTTGGAGTGGTGC  949

seq1  CCAAGAAGCCAGAGTCAGTCACTTCTTCCACAGTCTCTCCGATAGATAGC  999
      |||||||| |||||||||||||||||| |||||||||| |||||||||||
seq2  CCAAGAAG-CAGAGTCAGTCACTTCTTTCACAGTCTCTTCGATAGATAGC  998

seq1  ACAAGTGTGGCATTCACGAAAGACACAATGATGTAGGCATCAAACTCATC  1049
      |||||||| ||| |||||||||||||||||||||||||||| ||||||||
seq2  ACAAGTGT-GCA-TCACGAAAGACACAATGATGTAGGCATC-AACTCATC  1045

seq1  TGGAAAAAAGAAAACAGAGGAGCTGTTAGGAAAAATTCAAATTTACTAG-  1098
      ||||||||   ||||||| ||||||||||  ||| |||||||||||| | 
seq2  TGGAAAAA--GAAACAGA-GAGCTGTTAG--AAATTTCAAATTTACTTGC  1090

seq1  CATTAGAAAGGCAGTTGAGACACAACAGTTTTAGAAACCTTTCACAACAC  1148
      ||||||||  |||||||||||||||| | ||||| ||||||||  ||| |
seq2  CATTAGAA--GCAGTTGAGACACAACCG-TTTAG-AACCTTTC-TAAC-C  1134

seq1  TTCTAT-GTGCAGTCACTACACACATGCACACACAAAACAGA  1189
      |||||| |||||||| || ||||||||| |||   |||||||
seq2  TTCTATGGTGCAGTC-CT-CACACATGCCCACCACAAACAGA  1174

seq1: chr8_113478033_113479246
seq2: B6Ng01-068K02.g_66_1264 (reverse)

seq1  CTTGTTGGAGT-AGGTGTGTCACTGTGGATGTGGGCTTTAAGACCCACAT  49
      ||||||||||| ||||||  |  || | ||   |||  ||  ||||||  
seq2  CTTGTTGGAGTGAGGTGTACCCATG-GAAT---GGC--TAGAACCCACTC  44

seq1  CCTAGTTGCCTGGAAGCCAGTACTCTGCTAGCAGCCTTCAGATGAAGATG  99
       |||| ||||||| |||||| | ||||||||||||| |||| || |||||
seq2  TCTAG-TGCCTGG-AGCCAG-ATTCTGCTAGCAGCCCTCAG-TG-AGATG  89

seq1  TAG-AACTCTCAGCTCTGCCTGCATCATGTCTACCTAGATGCTGCTGTGC  148
      ||| |||||||||||| |||||||||||||||||||||||||||||| ||
seq2  TAGAAACTCTCAGCTCGGCCTGCATCATGTCTACCTAGATGCTGCTG-GC  138

seq1  T-CCCACCTGGATGATAATGGACTGAATCTCTGAACCTGTAAGCCAGCCC  197
      | ||||||| ||||| ||| ||||||||||| | ||||||||||||||||
seq2  TCCCCACCT-GATGA-AAT-GACTGAATCTCAG-ACCTGTAAGCCAGCCC  184

seq1  C-AATTAAATGTTGTCCTTTATAAGACTTGCCTTGGTCATGGTGTCTGTT  246
      | ||||||||| ||||| |||||||||||||||  |||||||||||||||
seq2  CAAATTAAATG-TGTCC-TTATAAGACTTGCCTGAGTCATGGTGTCTGTT  232

seq1  CACAGCAGTAAAACCCTAACTAAGACACCTTCTAATCCTTTCAAATTGTG  296
      ||||||||||||||||||||||||||  ||||| |||| |||||||||||
seq2  CACAGCAGTAAAACCCTAACTAAGACCACTTCT-ATCCCTTCAAATTGTG  281

seq1  CTACTCCCTGGTGACTAAGCATTCATCTCTATGATGTGTTGGCCATTCTT  346
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTACTCCCTGGTGACTAAGCATTCATCTCTATGATGTGTAGGCCATTCTT  331

seq1  ACTCAAGCTACTGCAATGGCTTTAAACTCAAATGATTCACTTGCCTTTAT  396
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACTCAAGCTACTGCAATGGC-TTAAACTCAAATGATTCACTTGCCTTTAT  380

seq1  GTTCCGAGTGCTAGGATTATAGGCATGTACCTGCCTGGCTTGAAGCTTC-  445
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTTCCGAGTGCTAGGATTATAGGCATGTACCTGCCTGGCTTGAAGCTTCA  430

seq1  AAAAAAATGGTACTTATTTAATTATTTGTGTATGTATATTTTGGACATCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATGGTACTTATTTAATTATTTGTGTATGTATATTTTGGACATCA  480

seq1  GAGAAAAACTTAAGGGAGCCAGTTTTTGTTTTGTTTTGTTTTGTTTTGTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAACTTAAGGGAGCCAGTTTTTGTTTTGTTTTGTTTTGTTTTGTT  530

seq1  TTGTGAGGCAAGGTTTCTCTTTGTAACAGAGCCCTGACTCTCCTGGAACT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGGCAAGGTTTCTCTTTGTAACAGAGCCCTGACTCTCCTGGAACT  580

seq1  TGCTTTGTAGACCAGGCTGGCCTCCGACTCATAAAGATCTACCTTCCTCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGTAGACCAGGCTGGCCTCCGACTCATAAAGATCTACCTTCCTCT  630

seq1  GCCTCCTGAGTGCTGGGATTAAAGGTCTAAGCCAACACACCAGGCAAGGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTGAGTGCTGGGATTAAAGGTCTAAGCCAACACACCAGGCAAGGG  680

seq1  GGTCGGTTCTTTTCTTCTCCTATGTGGGTCCCAGGGATTGAATTTGGGTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGGTTCTTTTCTTCTCCTATGTGGGTCCCAGGGATTGAATTTGGGTC  730

seq1  AGTAGGTGTGGCAGGAAGAACGTGTTCCTTCTGAGCTATCTCAGCACCTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGTGTGGCAGGAAGAACGTGTTCCTTCTGAGCTATCTCAGCACCTC  780

seq1  TGCCGTTCTTTCACTTCCTCCCTGAGCCTTGTGCAGCTGCAGTGACTCAC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGTTCTTTCACTTCCTCCCTGAGCCTTGTGCAGCTGCAGTGACTCAC  830

seq1  AGGTTTCTTCTAGCACTCCGTCTCGTCTCAGGCATTGAGCGAGATCAGGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCTTCTAGCACTCCGTCTCGTCTCAGGCATTGAGCGAGATCAGGT  880

seq1  CTCAAAGCTCACTGCCACTCATAAGGTCATGGCCTTAAGCAGGTGCTTTC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGCTCACTGCCACTCATAAGGTCATGGCCTTAAGCAGGTGCTTTC  930

seq1  ACATCTATAAGCATCATTTTCCTGATCTAGAATAATGTCTTCCCTATTAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTATAAGCATCATTTTCCTGATCTAGAATAATGTCTTCCCTATTAT  980

seq1  ATCGTGCTAATACTGGTCCCTGATGGCTCTGGGGTTTCGCTTCACTGAAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTGCTAATACTGGTCCCTGATGGCTCTGGGGTTTCGCTTCACTGAAG  1030

seq1  AAATTTGAGCCATCACAAACTGAGGGGACAGGGGGCTTGTTCTTTCCTGT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGAGCCATCACAAACTGAGGGGACAGGGGGCTTGTTCTTTCCTGT  1080

seq1  TCTCTCTTAAAAGACGTATTTATTTTCATTTTATGCATATGAATGTTTTG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTAAAAGACGTATTTATTTTCATTTTATGCATATGAATGTTTTG  1130

seq1  TCTGCGTGTATATCTGTATATCGTGTGCATGCCAGGTGCCCCAGGAGGCC  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCGTGTATATCTGTATATCGTGTGCATGCCAGGTGCCCCAGGAGGCC  1180

seq1  AGACGCCGGTAAAGAATTC  1214
      |||||||||||||||||||
seq2  AGACGCCGGTAAAGAATTC  1199