BAC Information

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BAC

Clone NameB6Ng01-071E19
Chromosome19 (Build37)8 (Build37)
Map Location 5,210,952 - 5,211,08073,751,436 - 73,752,105
singlet/doubletsingletsinglet
Overlap genePacs1
Upstream geneClcf1, Pold4, Ssh3, Ankrd13d, Adrbk1, Fbxl11, LOC100043628, Rhod, Syt12, 2010003K11Rik, Pcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424
Downstream geneSf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2, Pola2, Slc22a20, Capn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550, Naaladl1, Sac3d1, Snx15, Arl2, EG433216, Batf2, LOC622554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071E19.bB6Ng01-071E19.g
ACCDH889037DH889038
length1,022935
definitionDH889037|Mus musculus domesticus DNA, BAC clone: B6Ng01-071E19, 5' end.DH889038|Mus musculus domesticus DNA, BAC clone: B6Ng01-071E19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(5,210,952 - 5,211,080)(73,751,436 - 73,752,105)
sequence
gaattcaaggcccataactacacataataaaagcaaaccaacagccaata
tcaatttactgaaaaccaacaggcaatataaaattaaatggaaacatact
tgaagcaatcccactgaaatcggggacaagacaaggatgcccattctccc
catatctattcaatatagtactcaaagtattagctagaacaataagacaa
tgaaaaggaatcaaagggatacacattggtaaagaagaaataaaggtatc
actatttgcagatgacatgatagtatacataagcaactccaaaaattcta
ccagagaatttctccagctgataaacaacttcagcaaagtggcctgatat
aaaattataaaattaactcaaataaatcagtaaccttcctttatacaaag
gataaacaggctgagaaagaaatttgggggaggcagaggcaggtggattt
ctgagttcaaggccagactggtcctcagagtgagttccaggacagccagg
gctacacagagaaaccctatcttgaaaaaccaaaaaaaagaagaagaaaa
gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaga
aagaaagaaagaaagaaagaggaagaaaagaaaagagaaggaaaggaaag
gaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaag
aaaagaaaagaaaagaaaagaaaagaaaagaaattcgggaaataattccc
tttacaatagccacaaatagtataaaatatcttggagtaactctaaccaa
acaagtgaaagacctgtatgacaataacttcaagtctctaaagaaagaaa
ttgatgaagatctcagaaaatggagagatctcccatgcttatagattgat
agaatcaacatagtaaaaacggctatcctaccaaaggcaatctatagatt
cagtgcaatcctcatcaaaatcccaacacaattcttcgaagacatggaaa
gaacatttctcaaattcatctg
gaattcataaatgtgcttgcctctgtctcctatgttctgggattgaaggc
acatacaaacatacatggacataagctctttaatttttttcaaggatgga
agtttatttaactgagtggaattttgccctgaggtcaccactctctcaac
tccatttaatatctttaatcgggttatcttcttgaacacaggaattaatt
ccattctatttcctggcttccctttaatccttgaatcataaattttttac
tttccttgagaagtttcctctatttcatcaaaatgttgttcataagaggg
aactacaggatagaatttacactgggctcttgagatttccatgccattgc
aacttatctaactctttactttttgccacatgcagacactttggaccaga
gcaaaaatcagtcacattctttgctaaaatatgacaagaatgatgtctag
gtaccatgctagggttttattgctgtaaaggcacaccataaccatggcaa
ctcatacaggaaaccacttaattggagatggcttacaatttcatagggtt
agtccattatcaccttggtaggaagcacggcagtgtgcatgaaatcatgg
tgcagggggaacccataattctacatcttgatctgatggcagcaggagac
tgatgccacactgggcatagcttggtcatataagacttcaaagcctaaca
acacagtgacaccctccctccaacaagagtgtatggaggccatacctatt
caaaccaccacaataagtatatattctttgacattccatgcttcttcatg
ccccagttatacaattggcatttcatcttgaaaattacttcctaacaaaa
ttatctagagatgttagataatataagaagtatgatttatttttttgaaa
ccatatcttgcttggttgtgaggggggatgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_5210952_5211080
seq2: B6Ng01-071E19.b_475_600 (reverse)

seq1  TTTCTTTTCTTTTCTTTTTTCTTTTTGGTTTTTCGAGACAGGGTTTCTCT  50
      |||||||||  ||||| ||| ||||||||||||| ||| |||||||||||
seq2  TTTCTTTTC--TTCTTCTTT-TTTTTGGTTTTTCAAGATAGGGTTTCTCT  47

seq1  GTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTAG  100
      ||||||||||||||||||||||||||||||||  |||||| ||||||| |
seq2  GTGTAGCCCTGGCTGTCCTGGAACTCACTCTGAGGACCAGTCTGGCCTTG  97

seq1  AACTCAGAAATCTGCCTGCCTCTGCCTCC  129
      ||||||||||||  |||||||||||||||
seq2  AACTCAGAAATCCACCTGCCTCTGCCTCC  126

seq1: chr8_73751436_73752105
seq2: B6Ng01-071E19.g_330_998

seq1  CCTCTATTTCATCAAAATGTTGTTCATAAGAGGGAACTACAGGATAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATTTCATCAAAATGTTGTTCATAAGAGGGAACTACAGGATAGAAT  50

seq1  TTACACTGGGCTCTTGAGATTTCCATGCCATTGCAACTTATCTAACTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTGGGCTCTTGAGATTTCCATGCCATTGCAACTTATCTAACTCTT  100

seq1  TACTTTTTGCCACATGCAGACACTTTGGACCAGAGCAAAAATCAGTCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTGCCACATGCAGACACTTTGGACCAGAGCAAAAATCAGTCACA  150

seq1  TTCTTTGCTAAAATATGACAAGAATGATGTCTAGGTACCATGCTAGGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGCTAAAATATGACAAGAATGATGTCTAGGTACCATGCTAGGGTT  200

seq1  TTATTGCTGTAAAGGCACACCATAACCATGGCAACTCATACAGGAAACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGCTGTAAAGGCACACCATAACCATGGCAACTCATACAGGAAACCA  250

seq1  CTTAATTGGAGATGGCTTACAATTTCATAGGGTTAGTCCATTATCACCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTGGAGATGGCTTACAATTTCATAGGGTTAGTCCATTATCACCTT  300

seq1  GGTAGGAAGCACGGCAGTGTGCATGAAATCATGGTGCAGGGGGAACCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGAAGCACGGCAGTGTGCATGAAATCATGGTGCAGGGGGAACCCAT  350

seq1  AATTCTACATCTTGATCTGATGGCAGCAGGAGACTGATGCCACACTGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTACATCTTGATCTGATGGCAGCAGGAGACTGATGCCACACTGGGC  400

seq1  ATAGCTTGGTCATATAAGACTTCAAAGCCTAACAACACAGTGACACCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTGGTCATATAAGACTTCAAAGCCTAACAACACAGTGACACCCTC  450

seq1  CCTCCAACAAGAGTGTATGGAGGCCATACCTATTCAAACCACCACAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAACAAGAGTGTATGGAGGCCATACCTATTCAAACCACCACAATAA  500

seq1  GTATATATTCTTTGACATTCCATGCTTCTTCATGCCCCAGTTATACAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATATTCTTTGACATTCCATGCTTCTTCATGCCCCAGTTATACAATT  550

seq1  GGCATTTCATCTTGAAAAATTACTTCCTAACAAAATTATCTAGAGATGTT  600
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGCATTTCATCTTG-AAAATTACTTCCTAACAAAATTATCTAGAGATGTT  599

seq1  AGATAATATAAGAAGTATGATTTATTTTTTTGAAACCATATCTTGCTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATATAAGAAGTATGATTTATTTTTTTGAAACCATATCTTGCTTGG  649

seq1  TTGTGAGGGGGGATGTGTGT  670
      ||||||||||||||||||||
seq2  TTGTGAGGGGGGATGTGTGT  669