BAC Information

Click to search

BAC

Clone NameB6Ng01-071G14
Chromosome8 (Build37)
Map Location 86,765,529 - 86,900,009
singlet/doubletdoublet
Overlap geneD8Ertd738e, 2410018C20Rik, Ccdc130
Upstream geneTbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4
Downstream geneCacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071G14.bB6Ng01-071G14.g
ACCDH889119DH889120
length9061,007
definitionDH889119|Mus musculus domesticus DNA, BAC clone: B6Ng01-071G14, 5' end.DH889120|Mus musculus domesticus DNA, BAC clone: B6Ng01-071G14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,765,529 - 86,766,433)(86,898,998 - 86,900,009)
sequence
gaattctgggtctccattttaaatagatggggccatggtggctcagagag
gttaaatgactagctgatgttgtcacacatgcagccaagaggtggctaga
cctgtctgtcatcacagcatgagctaaggtaggggcatgccaagtttgaa
gccagcctgagctactacacacaagtatctagaacacaagaacaacacac
cttcatgcagaatttgaggttcaggaactattggtgtcgtgtagcaggga
aatgaggagaaaggtagccaggagtcctaagggacagctgtgccatcatt
ccagatcccaggccatggggccttttgaagaggctcaccaagctggcacc
agagtcacagggcagttattcctacggtttcttggcttgcctccaggcta
attgggggcaagcctggctgggttcccagggcctcccagtggcccatagc
caggttccatgggtctcctgcttttccctgttccataaagatgggtgaaa
agagggtactccaggggctagggagatagctcaggggtcaagagcactgg
ctgctctttcaaaggtcaaaggtttgattctcagcactcacacggtggcc
taccaatatctaactcagttccaggggatcaagacccttcttctggcact
agggacacatgtgatggacagacacatgcaggtaaaacactgtcacattc
aggaaagtgcacactcaggaaagctcctgtgcttgtgggtgctatgtggc
aagggcagcggctcagaggggcaaggtgtggaaatgtggaaggtgagtga
ctcctgatgagctgtggctccctagcactgggctttcctgctagagctca
cagcataggctggtcagaggcagcagcagggcaaggtaggtggtgggtgg
atatgt
gaattcaatccctagaaaccacattttaaaaaagagagagagagctacag
acaggtggtgtgcacatgtaatgccagcattcccacagtgagatgccggg
aagagacagaagaatcaggcataggcagccatcctgaagcaagagagact
gcctcagcagacagaagagatccggctctggaaaagtactctctgacata
tacatccccatctgtgcacacacacctgacgtgcacacacatacaataca
cagcagtagcacagaagctgagggggacaaaagcagtgtccctttataac
ccgacctcccctctgccatacttcggctgtggtaagaggatcatcgagaa
cctccaatggaaggcaggacgtgtgatcactggtacctgttttggaggct
gccagcacctggagacagacaagatgaagattcctttattaattcctgat
tcacactgctgggtctgaagtgtagctgggccaactctagctgtgagacc
ttaggtaagtcaattaccctctctgtgcctgagtttccagatctggggat
gagcatgattttagcattgaccatgcaggcttgtatggggagtacagttt
gattccctttggtactgtctgggaggctaccaggagggcctcgaggtcaa
gaacagcctgggtgaccagttagaccctgactcaataaacaaacagaaat
gattacagtcaaagatgaggttttctgtttcattttggttttcatttgtt
tgtttgtttgtttgtttgtttgtaagtcgcagaagagtcacgggctagtt
agaggaaggctgctttcagagcttaccacttacagggtggctgactgccc
tgagggggaggggctggcacatctctgcaggctgccttccagtgactaca
ggagtgcagaactcctagagacagcagcggcctcagcactttagaaccga
aagctttggaaaagccttcgagttggggggaggaagagagaactcagata
ctggcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_86765529_86766433
seq2: B6Ng01-071G14.b_47_952

seq1  GAATTCTGGGTCTCCATTTTAAATAGATGGGGCCATGGTGGCTCAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGTCTCCATTTTAAATAGATGGGGCCATGGTGGCTCAGAGAG  50

seq1  GTTAAATGACTAGCTGATGTTGTCACACATGCAGCCAAGAGGTGGCTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATGACTAGCTGATGTTGTCACACATGCAGCCAAGAGGTGGCTAGA  100

seq1  CCTGTCTGTCATCACAGCATGAGCTAAGGTAGGGGCATGCCAAGTTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTGTCATCACAGCATGAGCTAAGGTAGGGGCATGCCAAGTTTGAA  150

seq1  GCCAGCCTGAGCTACTACACACAAGTATCTAGAACACAAGAACAACACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTGAGCTACTACACACAAGTATCTAGAACACAAGAACAACACAC  200

seq1  CTTCATGCAGAATTTGAGGTTCAGGAACTATTGGTGTCGTGTAGCAGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGCAGAATTTGAGGTTCAGGAACTATTGGTGTCGTGTAGCAGGGA  250

seq1  AATGAGGAGAAAGGTAGCCAGGAGTCCTAAGGGACAGCTGTGCCATCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGAGAAAGGTAGCCAGGAGTCCTAAGGGACAGCTGTGCCATCATT  300

seq1  CCAGATCCCAGGCCATGGGGCCTTTTGAAGAGGCTCACCAAGCTGGCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCCCAGGCCATGGGGCCTTTTGAAGAGGCTCACCAAGCTGGCACC  350

seq1  AGAGTCACAGGGCAGTTATTCCTACGGTTTCTTGGCTTGCCTCCAGGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCACAGGGCAGTTATTCCTACGGTTTCTTGGCTTGCCTCCAGGCTA  400

seq1  ATTGGGGGCAAGCCTGGCTGGGTTCCCAGGGCCTCCCAGTGGCCCATAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGGGCAAGCCTGGCTGGGTTCCCAGGGCCTCCCAGTGGCCCATAGC  450

seq1  CAGGTTCCATGGGTCTCCTGCTTTTCCCTGTTCCATAAAGATGGGTGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCCATGGGTCTCCTGCTTTTCCCTGTTCCATAAAGATGGGTGAAA  500

seq1  AGAGGGTACTCCAGGGGCTAGGGAGATAGCTCAGGGGTCAAGAGCACTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTACTCCAGGGGCTAGGGAGATAGCTCAGGGGTCAAGAGCACTGG  550

seq1  CTGCTCTTTCAAAGGTCAAAGGTTTGATTCTCAGCACTCACACGGTGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTTTCAAAGGTCAAAGGTTTGATTCTCAGCACTCACACGGTGGCC  600

seq1  TACCAATATCTAACTCAGTTCCAGGGGATCAAGACCCTTCTTCTGGCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAATATCTAACTCAGTTCCAGGGGATCAAGACCCTTCTTCTGGCACT  650

seq1  AGGGACACATGTGATGGACAGACACATGCAGGTAAAACACTGTCACATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACACATGTGATGGACAGACACATGCAGGTAAAACACTGTCACATTC  700

seq1  AGGAAAGTGCACACTCAGGAAAGCTCCTGTGCTTGTGGGTGCTATGTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGTGCACACTCAGGAAAGCTCCTGTGCTTGTGGGTGCTATGTGGC  750

seq1  AAGGGCAGCGGCTCAGAGGGGCAAGGTGTGGAAATGTGGAAGGTGAGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCAGCGGCTCAGAGGGGCAAGGTGTGGAAATGTGGAAGGTGAGTGA  800

seq1  CTCCTGATGAGCTGTGGCTCCCTAGCACTGGGCTTTCCTGCTAGAGCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGATGAGCTGTGGCTCCCTAGCACTGGGCTTTCCTGCTAGAGCTCA  850

seq1  CAGCATAGGCTGGTCAGAGGCAGCAGCAGGGCAAGGTAGGTGGTGGGTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATAGGCTGGTCAGAGGCAGCAGCAGGGCAAGGTAGGTGGTGGGTGG  900

seq1  -TATGT  905
       |||||
seq2  ATATGT  906

seq1: chr8_86898998_86900009
seq2: B6Ng01-071G14.g_67_1073 (reverse)

seq1  CTGCCAGTTCTCCTGAGTTCTCCTCTTCCTCCCCCCAACTCGAAGGCTTT  50
      ||||||||    ||||||||| ||||||||||||||||||||||||| ||
seq2  CTGCCAGT--ATCTGAGTTCT-CTCTTCCTCCCCCCAACTCGAAGGC-TT  46

seq1  TTCCAAAGCTTTCGGTTCTAAAAGTGCTGAGGCCGCTGCTGTCTCTAGGA  100
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTCCAAAGCTTTCGGTTCT-AAAGTGCTGAGGCCGCTGCTGTCTCTAGGA  95

seq1  GTTCTGCACTCCTGTAGTCACTGGAAGGCAGCCTGCAGAGATGTGCCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGCACTCCTGTAGTCACTGGAAGGCAGCCTGCAGAGATGTGCCAGC  145

seq1  CCCTCCCCCTCAGGGCAGTCAGCCACCCTGTAAGTGGTAAGCTCTGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCCTCAGGGCAGTCAGCCACCCTGTAAGTGGTAAGCTCTGAAAG  195

seq1  CAGCCTTCCTCTAACTAGCCCGTGACTCTTCTGCGACTTACAAACAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTCCTCTAACTAGCCCGTGACTCTTCTGCGACTTACAAACAAACA  245

seq1  AACAAACAAACAAACAAATGAAAACCAAAATGAAACAGAAAACCTCATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAAACAAATGAAAACCAAAATGAAACAGAAAACCTCATCT  295

seq1  TTGACTGTAATCATTTCTGTTTGTTTATTGAGTCAGGGTCTAACTGGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTGTAATCATTTCTGTTTGTTTATTGAGTCAGGGTCTAACTGGTCA  345

seq1  CCCAGGCTGTTCTTGACCTCGAGGCCCTCCTGGTAGCCTCCCAGACAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCTGTTCTTGACCTCGAGGCCCTCCTGGTAGCCTCCCAGACAGTA  395

seq1  CCAAAGGGAATCAAACTGTACTCCCCATACAAGCCTGCATGGTCAATGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGGAATCAAACTGTACTCCCCATACAAGCCTGCATGGTCAATGCT  445

seq1  AAAATCATGCTCATCCCCAGATCTGGAAACTCAGGCACAGAGAGGGTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATGCTCATCCCCAGATCTGGAAACTCAGGCACAGAGAGGGTAAT  495

seq1  TGACTTACCTAAGGTCTCACAGCTAGAGTTGGCCCAGCTACACTTCAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTACCTAAGGTCTCACAGCTAGAGTTGGCCCAGCTACACTTCAGAC  545

seq1  CCAGCAGTGTGAATCAGGAATTAATAAAGGAATCTTCATCTTGTCTGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGTGTGAATCAGGAATTAATAAAGGAATCTTCATCTTGTCTGTCT  595

seq1  CCAGGTGCTGGCAGCCTCCAAAACAGGTACCAGTGATCACACGTCCTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGCTGGCAGCCTCCAAAACAGGTACCAGTGATCACACGTCCTGCC  645

seq1  TTCCATTGGAGGTTCTCGATGATCCTCTTACCACAGCCGAAGTATGGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTGGAGGTTCTCGATGATCCTCTTACCACAGCCGAAGTATGGCAG  695

seq1  AGGGGAGGTCGGGTTATAAAGGGACACTGCTTTTGTCCCCCTCAGCTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGGTCGGGTTATAAAGGGACACTGCTTTTGTCCCCCTCAGCTTCT  745

seq1  GTGCTACTGCTGTGTATTGTATGTGTGTGCACGTCAGGTGTGTGTGCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTACTGCTGTGTATTGTATGTGTGTGCACGTCAGGTGTGTGTGCACA  795

seq1  GATGGGGATGTATATGTCAGAGAGTACTTTTCCAGAGCCGGATCTCTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGGATGTATATGTCAGAGAGTACTTTTCCAGAGCCGGATCTCTTCT  845

seq1  GTCTGCTGAGGCAGTCTCTCTTGCTTCAGGATGGCTGCCTATGCCTGATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCTGAGGCAGTCTCTCTTGCTTCAGGATGGCTGCCTATGCCTGATT  895

seq1  CTTCTGTCTCTTCCCGGCATCTCACTGTGGGAATGCTGGCATTACATGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTCTCTTCCCGGCATCTCACTGTGGGAATGCTGGCATTACATGTG  945

seq1  CACACCACCTGTCTGTAGCTCTCTCTCTCTTTTTTAAAATGTGGTTTCTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCACCTGTCTGTAGCTCTCTCTCTCTTTTTTAAAATGTGGTTTCTA  995

seq1  GGGATTGAATTC  1012
      ||||||||||||
seq2  GGGATTGAATTC  1007