BAC Information

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BAC

Clone NameB6Ng01-071P04
Chromosome8 (Build37)
Map Location 124,141,197 - 124,174,255
singlet/doubletdoublet
Overlap geneZcchc14
Upstream gene1190005I06Rik, Cox4nb, Cox4i1, Irf8, LOC100042333, Foxf1a, Mthfsd, Foxc2, Foxl1, 1700018B08Rik, Fbxo31, Map1lc3b
Downstream geneJph3, Klhdc4, Slc7a5, BC048644, Car5a, Banp, Gm22, Zfpm1, Trhr2, 5830416A07Rik, Il17c, Cyba, Mvd, Snai3, Rnf166, 2310061F22Rik, Cdt1, Aprt, Galns, Trappc2l, Pabpnl1, Cbfa2t3h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071P04.bB6Ng01-071P04.g
ACCDH889503DH889504
length1,1121,153
definitionDH889503|Mus musculus domesticus DNA, BAC clone: B6Ng01-071P04, 5' end.DH889504|Mus musculus domesticus DNA, BAC clone: B6Ng01-071P04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,173,122 - 124,174,255)(124,141,197 - 124,142,359)
sequence
gaattcagagtagaagtgtctagaacaaatgtcttgggtcctctcccacc
cacacagtactagggatggagcctggagcttgtgcatgccaggcaggtgc
ttggccactgagccccaccccactgcagccagccctcacaatgcctgtat
aagatggcctttgtctcaggcaaaagtccacggcgagatggagttaatct
agtccccagggtctgggcactggtcgcccgccttggtctcctgtgctgta
ggaggctgggctgaagtcctccagaggtgacagggcagctggcagctgtg
ctccccgtgtttttcccggccatgttggctgtcagtggttctgtggagcc
atgcgttgtctgcccgaacggctctcgtcctgagcttgcagctgttgcag
ttttcaggaatcctgtggctgatagggctggggttttctttagaaagttg
ggggacattgtttggccctggcacaggggctcttgacttagcaatgaagg
ctgggtctcacttgctcagatccaaacaggtccatttctctttcttttcc
ctggctctgagtcactcccgaagggactgttccccaaagctgaacttggg
ctcatttgtagctctgagattgaagcctgattgtgtgtgtacttggaggg
ggatccttggagggagaagtccagccgagagccacttagcactgaactcc
ggcctcctctgcatcctcagcagaaggtggctcttgtgtttctttctgag
ctgtgtcacttggttttgaacttaggactgagactttgctctcagaagtg
aaggtgtggagtgtttttggatgttgtctgatttaaatgtttatttctct
tacctgagttttctggaaagcttggtattgtaagcttctttacgctttct
tttccctttttattttaaatgtataacgttcagagcagccctagatgttt
aaagtgtggtttatttattttaaagaccgagttttggatgtgggaggact
ctagagtgggggcagtgtttgggatgtaaataaaataaataataataaga
ccagttcattgtctggcccacccttgctgggatgctatcctctgctcagc
ttctgcaggctg
gaattcaaacctactgtgacggacttgcagaagcaaggctcgctctcaag
gtggctctatgcgaattatctctgcaaacagtctgctgggctgagaacgt
ccctctcagatataccagagcaaaacaggacagacaggaaggagtgacac
aagatcatcactaataccacaagacaccaagtttctaaggagatgcgacc
acagcacgtcccaggccctttagaacctgctgcccacaccgccttgagca
ccagggcttggtggattcatggtgctccagggttaccacagtcaacagcc
tccagaacctgtaccaagggttcaccttgtgttcagattagacccatctg
caaaacaacaggtcctcactacacagcacctcctaaaacatacgtctggc
tcacatccagtgctacaccctcaacaggagtctcttgggtgtgcttacca
ttactgctggggcagcgtctcatgatccgcccaagtctgaaggcagggtc
tgagaaatgtctaccctgtcatgtcaggtaagtgacagaatcatgaacac
aagccagcactacagtctcggctacctatgcagctaagtaagaccaaaaa
accaaaattcttgtcaacaaaatgtaagtggaaactcttccagctgtccc
tgagcacattcctcctctctaggttgcatcctgtcccccagtaagggtga
aagtgtgggtataaagccccagctgccatcttggaccaaaaggctaacaa
ctacagaccctgcagccatgcacaaggtaaactggagttagctaggaccg
agctctgacggaggccagggactgcctccctgaacattgttgactagaaa
caaaaggagcttttgggctgtcccagtctctgtcgagtcttctcagcaca
cacaccgtcctatttccacagtgcatttccagtttgcagcacattcccct
atatagagaccaagtggccatgcaaccagcatgtatgtgtgactcatcaa
gggacacacatctagggacttactgcccgtgagtgcccagtgccacagcc
tgatttcattttctctgcacgagagtgagcaaccatgtctcctcctctcc
agggagaagcagctcagccactgtcccagtacatgtgaccagagaattca
tgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_124173122_124174255
seq2: B6Ng01-071P04.b_48_1159 (reverse)

seq1  CAGCTCTGCAGAGGCTGAGGCAGGAGGATAGCAATTCCCAGGCCAGGGTG  50
      |||| ||||||| ||||| ||| ||||||||||  ||||| || ||||||
seq2  CAGC-CTGCAGAAGCTGA-GCA-GAGGATAGCA--TCCCA-GCAAGGGTG  44

seq1  AGCAAGACAATGAAACCTTGGTCTTTATTTTATTTTATTTTATTTTATTT  100
       || ||||||||||    |||||      ||||| |  ||||||||||||
seq2  GGCCAGACAATGAA---CTGGTC------TTATTATTATTTATTTTATTT  85

seq1  ACATCCCAAACACTGCCCCCACTTCTAGAGTCCCTCCCCACATTCCCAAA  150
      |||||||||||||||||||||| ||||||||||   |||||||  |||||
seq2  ACATCCCAAACACTGCCCCCAC-TCTAGAGTCC--TCCCACAT--CCAAA  130

seq1  ACCTCGGTCTTTAAAATAAATAAACCACACTTTTAAACATCTAGGGCTGC  200
      | |||||||||||||||||||||||||||| |||||||||||||||||||
seq2  A-CTCGGTCTTTAAAATAAATAAACCACAC-TTTAAACATCTAGGGCTGC  178

seq1  TCTGAACGTTATACATTTAAAATAAAAAGGGAAAAGAAAGCGTAAAGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACGTTATACATTTAAAATAAAAAGGGAAAAGAAAGCGTAAAGAAG  228

seq1  CTTACAATACCAAGCTTTCCAGAAAACTCAGGTAAGAGAAATAAACATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAATACCAAGCTTTCCAGAAAACTCAGGTAAGAGAAATAAACATTT  278

seq1  AAATCAGACAACATCCAAAAACACTCCACACCTTCACTTCTGAGAGCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGACAACATCCAAAAACACTCCACACCTTCACTTCTGAGAGCAAA  328

seq1  GTCTCAGTCCTAAGTTCAAAACCAAGTGACACAGCTCAGAAAGAAACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGTCCTAAGTTCAAAACCAAGTGACACAGCTCAGAAAGAAACACA  378

seq1  AGAGCCACCTTCTGCTGAGGATGCAGAGGAGGCCGGAGTTCAGTGCTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCACCTTCTGCTGAGGATGCAGAGGAGGCCGGAGTTCAGTGCTAAG  428

seq1  TGGCTCTCGGCTGGACTTCTCCCTCCAAGGATCCCCCTCCAAGTACACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTCGGCTGGACTTCTCCCTCCAAGGATCCCCCTCCAAGTACACAC  478

seq1  ACAATCAGGCTTCAATCTCAGAGCTACAAATGAGCCCAAGTTCAGCTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCAGGCTTCAATCTCAGAGCTACAAATGAGCCCAAGTTCAGCTTTG  528

seq1  GGGAACAGTCCCTTCGGGAGTGACTCAGAGCCAGGGAAAAGAAAGAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACAGTCCCTTCGGGAGTGACTCAGAGCCAGGGAAAAGAAAGAGAAA  578

seq1  TGGACCTGTTTGGATCTGAGCAAGTGAGACCCAGCCTTCATTGCTAAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCTGTTTGGATCTGAGCAAGTGAGACCCAGCCTTCATTGCTAAGTC  628

seq1  AAGAGCCCCTGTGCCAGGGCCAAACAATGTCCCCCAACTTTCTAAAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCCCTGTGCCAGGGCCAAACAATGTCCCCCAACTTTCTAAAGAAA  678

seq1  ACCCCAGCCCTATCAGCCACAGGATTCCTGAAAACTGCAACAGCTGCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGCCCTATCAGCCACAGGATTCCTGAAAACTGCAACAGCTGCAAG  728

seq1  CTCAGGACGAGAGCCGTTCGGGCAGACAACGCATGGCTCCACAGAACCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGACGAGAGCCGTTCGGGCAGACAACGCATGGCTCCACAGAACCAC  778

seq1  TGACAGCCAACATGGCCGGGAAAAACACGGGGAGCACAGCTGCCAGCTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCCAACATGGCCGGGAAAAACACGGGGAGCACAGCTGCCAGCTGC  828

seq1  CCTGTCACCTCTGGAGGACTTCAGCCCAGCCTCCTACAGCACAGGAGACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCACCTCTGGAGGACTTCAGCCCAGCCTCCTACAGCACAGGAGACC  878

seq1  AAGGCGGGCGACCAGTGCCCAGACCCTGGGGACTAGATTAACTCCATCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCGGGCGACCAGTGCCCAGACCCTGGGGACTAGATTAACTCCATCTC  928

seq1  GCCGTGGACTTTTGCCTGAGACAAAGGCCATCTTATACAGGCATTGTGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTGGACTTTTGCCTGAGACAAAGGCCATCTTATACAGGCATTGTGAG  978

seq1  GGCTGGCTGCAGTGGGGTGGGGCTCAGTGGCCAAGCACCTGCCTGGCATG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCTGCAGTGGGGTGGGGCTCAGTGGCCAAGCACCTGCCTGGCATG  1028

seq1  CACAAGCTCCAGGCTCCATCCCTAGTACTGTGTGGGTGGGAGAGGACCCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCTCCAGGCTCCATCCCTAGTACTGTGTGGGTGGGAGAGGACCCA  1078

seq1  AGACATTTGTTCTAGACACTTCTACTCTGAATTC  1134
      ||||||||||||||||||||||||||||||||||
seq2  AGACATTTGTTCTAGACACTTCTACTCTGAATTC  1112

seq1: chr8_124141197_124142359
seq2: B6Ng01-071P04.g_67_1219

seq1  GAATTCAAACCTACTGTGACGGACTTGCAGAAGCAAGGCTCGCTCTCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACCTACTGTGACGGACTTGCAGAAGCAAGGCTCGCTCTCAAG  50

seq1  GTGGCTCTATGCGAATTATCTCTGCAAACAGTCTGCTGGGCTGAGAACGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCTATGCGAATTATCTCTGCAAACAGTCTGCTGGGCTGAGAACGT  100

seq1  CCCTCTCAGATATACCAGAGCAAAACAGGACAGACAGGAAGGAGTGACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCAGATATACCAGAGCAAAACAGGACAGACAGGAAGGAGTGACAC  150

seq1  AAGATCATCACTAATACCACAAGACACCAAGTTTCTAAGGAGATGCGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCATCACTAATACCACAAGACACCAAGTTTCTAAGGAGATGCGACC  200

seq1  ACAGCACGTCCCAGGCCCTTTAGAACCTGCTGCCCACACCGCCTTGAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACGTCCCAGGCCCTTTAGAACCTGCTGCCCACACCGCCTTGAGCA  250

seq1  CCAGGGCTTGGTGGATTCATGGTGCTCCAGGGTTACCACAGTCAACAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCTTGGTGGATTCATGGTGCTCCAGGGTTACCACAGTCAACAGCC  300

seq1  TCCAGAACCTGTACCAAGGGTTCACCTTGTGTTCAGATTAGACCCATCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAACCTGTACCAAGGGTTCACCTTGTGTTCAGATTAGACCCATCTG  350

seq1  CAAAACAACAGGTCCTCACTACACAGCACCTCCTAAAACATACGTCTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAACAGGTCCTCACTACACAGCACCTCCTAAAACATACGTCTGGC  400

seq1  TCACATCCAGTGCTACACCCTCAACAGGAGTCTCTTGGGTGTGCTTACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCCAGTGCTACACCCTCAACAGGAGTCTCTTGGGTGTGCTTACCA  450

seq1  TTACTGCTGGGGCAGCGTCTCATGATCCGCCCAAGTCTGAAGGCAGGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCTGGGGCAGCGTCTCATGATCCGCCCAAGTCTGAAGGCAGGGTC  500

seq1  TGAGAAATGTCTACCCTGTCATGTCAGGTAAGTGACAGAATCATGAACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAATGTCTACCCTGTCATGTCAGGTAAGTGACAGAATCATGAACAC  550

seq1  AAGCCAGCACTACAGTCTCGGCTACCTATGCAGCTAAGTAAGACCAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGCACTACAGTCTCGGCTACCTATGCAGCTAAGTAAGACCAAAAA  600

seq1  ACCAAAATTCTTGTCAACAAAATGTAAGTGGAAACTCTTCCAGCTGTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAATTCTTGTCAACAAAATGTAAGTGGAAACTCTTCCAGCTGTCCC  650

seq1  TGAGCACATTCCTCCTCTCTAGGTTGCATCCTGTCCCCCAGTAAGGGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACATTCCTCCTCTCTAGGTTGCATCCTGTCCCCCAGTAAGGGTGA  700

seq1  AAGTGTGGGTATAAAGCCCCAGCTGCCATCTTGGACCAAAAGGCTAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGGGTATAAAGCCCCAGCTGCCATCTTGGACCAAAAGGCTAACAA  750

seq1  CTACAGACCCTGCAGCCATGCACAAGGTAAACTGGAGTTAGCTAGGACCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGACCCTGCAGCCATGCACAAGGTAAACTGGAGTTAGCTAGGACCG  800

seq1  AGCTCTGACGGAGGCCAGGGACTGCCTCCCTGAACATTGTTGACTAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGACGGAGGCCAGGGACTGCCTCCCTGAACATTGTTGACTAGAAA  850

seq1  CAAAAGGAGCTTTTGGGCTGTCCCAGTCTCTGTCGAGTCTTCTCAGCACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGAGCTTTTGGGCTGTCCCAGTCTCTGTCGAGTCTTCTCAGCACA  900

seq1  CACACCGTCCTATTTCCACAGTGCATTTCCAGTTTGCAGCACATTCCCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCGTCCTATTTCCACAGTGCATTTCCAGTTTGCAGCACATTCCCCT  950

seq1  ATATAGAGACCAAGTGGCCATGCAACCAGCATGTATGTGTGACTCATCAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGAGACCAAGTGGCCATGCAACCAGCATGTATGTGTGACTCATCAA  1000

seq1  GGGACACACATCTAGGGACTTACTGCCCGTGAGTGCCCAGTGCCACAGCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACACACATCTAGGGACTTACTGCCCGTGAGTGCCCAGTGCCACAGCC  1050

seq1  TGATTTCATTTTCTCTGCACCGAGAGTGAAGGCAACCATGTCT-CTCCTC  1099
      ||||||||||||||||||| |||||||||  |||||||||||| ||||||
seq2  TGATTTCATTTTCTCTGCA-CGAGAGTGA--GCAACCATGTCTCCTCCTC  1097

seq1  TCCCAGGGAAGAAGGCCAGCTCAGCCACTGTCCCAGTTACATGTGACCAG  1149
      | |||||| |||||  |||||||||||||||||||| |||||||||||| 
seq2  T-CCAGGG-AGAAG--CAGCTCAGCCACTGTCCCAG-TACATGTGACCA-  1141

seq1  GAGGAAATTCATGG  1163
      |||  |||||||||
seq2  GAG--AATTCATGG  1153