This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
Click to search
Search Parameter
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Search Result
BAC
Clone Name
B6Ng01-072N13
Chromosome
8 (Build37)
Map Location
43,159,281 - 43,160,108
singlet/doublet
singlet
Overlap gene
none
Upstream gene
Mtus1
,
Fgl1
,
Pcm1
,
Asah1
,
Frg1
,
LOC100039376
,
Gm1815
,
LOC671994
Downstream gene
Zfp353
,
EG620772
,
LOC628212
Link
Open Mouse BAC browser
Click to get alignment info.
name
Mtus1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:102103
MGI:2142572
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs
name
Fgl1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:234199
MGI:102795
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Pcm1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:18536
MGI:1277958
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Asah1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:11886
MGI:1277124
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Frg1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:14300
MGI:893597
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC100039376
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100039376
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 60 ESTs, 24 Proteins
pseudo
: _no_value
name
Gm1815
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:211895
MGI:3037673
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 56 ESTs, 4 Proteins
name
LOC671994
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:671994
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins
pseudo
: _no_value
name
Zfp353
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:234203
MGI:2387419
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
EG620772
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:620772
MGI:3643972
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 mRNAs, 666 ESTs, 8 Proteins
name
LOC628212
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:628212
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 43 Proteins
pseudo
: _no_value
name
Mtus1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:111074533
GeneID:102103
MGI:2142572
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: mitochondrial tumor suppressor 1
transcript_id
: NM_001005863.2
name
Fgl1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:21704195
GeneID:234199
MGI:102795
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: fibrinogen-like protein 1
transcript_id
: NM_145594.1
name
Pcm1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:141803348
GeneID:18536
MGI:1277958
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: pericentriolar material 1
transcript_id
: NM_023662.2
name
Asah1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:9790018
GeneID:11886
MGI:1277124
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: N-acylsphingosine amidohydrolase 1
transcript_id
: NM_019734.1
name
Frg1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:7305068
GeneID:14300
MGI:893597
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: FSHD region gene 1
transcript_id
: NM_013522.1
name
Gm1815
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94383446
GeneID:211895
MGI:3037673
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 56 ESTs, 4 Proteins
product
: gene model 1815, (NCBI)
transcript_id
: XM_620647.3
name
Zfp353
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:120407055
GeneID:234203
MGI:2387419
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: zinc finger protein 353
transcript_id
: NM_153096.2
name
EG620772
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94383390
GeneID:620772
MGI:3643972
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 mRNAs, 666 ESTs, 8 Proteins
product
: predicted gene, EG620772, transcript variant 1
transcript_id
: XM_885460.2
name
Mtus1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:54312129
GeneID:102103
MGI:2142572
definition
GO_function
: GO:0004872 - receptor activity [Evidence IEA]
codon_start
: 1
note
: isoform 1 is encoded by transcript variant 1; AT2 receptor-interacting protein 1; coiled-coiled tumor supressor gene 1; angiotensin II AT2 receptor-interacting protein 1
product
: mitochondrial tumor suppressor 1 isoform 1
protein_id
: NP_001005863.1
name
Fgl1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:21704196
CCDS:CCDS22260.1
GeneID:234199
MGI:102795
definition
codon_start
: 1
exception
: mismatches in translation
product
: fibrinogen-like protein 1
protein_id
: NP_663569.1
name
Pcm1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:13540494
CCDS:CCDS22261.1
GeneID:18536
MGI:1277958
definition
codon_start
: 1
exception
: mismatches in translation
note
: pericentriolar material gene 1 protein
product
: pericentriolar material 1
protein_id
: NP_076151.1
name
Asah1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:9790019
CCDS:CCDS22262.1
GeneID:11886
MGI:1277124
definition
GO_component
: GO:0005764 - lysosome [Evidence IEA]
GO_function
: GO:0017040 - ceramidase activity [Evidence IDA]; GO:0016787 - hydrolase activity [Evidence IEA]
codon_start
: 1
function
: catalyzes the hydrolysis of ceramide to fatty acid and sphingosine
note
: acid ceramidase
product
: N-acylsphingosine amidohydrolase (acid ceramidase) 1
protein_id
: NP_062708.1
name
Frg1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:7305069
CCDS:CCDS22263.1
GeneID:14300
MGI:893597
definition
GO_component
: GO:0005634 - nucleus [Evidence IEA]
GO_process
: GO:0007046 - ribosome biogenesis [Evidence IEA]; GO:0006364 - rRNA processing [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
function
: unknown
product
: FSHD region gene 1
protein_id
: NP_038550.1
name
Gm1815
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:82917378
GeneID:211895
MGI:3037673
definition
codon_start
: 1
product
: similar to BAF57
protein_id
: XP_620647.2
name
Zfp353
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:120407056
CCDS:CCDS22264.1
GeneID:234203
MGI:2387419
definition
GO_component
: GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA]
GO_function
: GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
codon_start
: 1
product
: zinc finger protein 353
protein_id
: NP_694736.2
name
EG620772
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:82917245
GeneID:620772
MGI:3643972
definition
codon_start
: 1
product
: similar to Cofilin-1 (Cofilin, non-muscle isoform) isoform 1
protein_id
: XP_890553.1
name
LOC671994
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:671994
definition
number
: 1
pseudo
: _no_value
name
LOC671994
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:671994
definition
number
: 2
pseudo
: _no_value
name
LOC671994
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:671994
definition
number
: 3
pseudo
: _no_value
name
LOC671994
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:671994
definition
number
: 4
pseudo
: _no_value
name
LOC671994
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:671994
definition
number
: 5
pseudo
: _no_value
name
LOC671994
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:671994
definition
number
: 6
pseudo
: _no_value
name
LOC671994
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:671994
definition
number
: 7
pseudo
: _no_value
name
LOC628212
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:628212
definition
number
: 1
pseudo
: _no_value
name
LOC628212
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:628212
definition
number
: 2
pseudo
: _no_value
name
LOC628212
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:628212
definition
number
: 3
pseudo
: _no_value
name
LOC100039376
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149258726
GeneID:100039376
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 60 ESTs, 24 Proteins
product
: similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
pseudo
: _no_value
transcript_id
: XR_030884.1
clone name
MSMg01-317N15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-445G09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-433C05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-532N24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-336C15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-217I13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-351O13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-418M14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-386D02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-471B14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-543B18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-167O02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-144G24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-134D08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-288F03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-302P01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-433D04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-316L16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-424P10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-096G19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-441P09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-469M04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-427I09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-430M22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-447D24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-149C22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-145K14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-098M24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-297J24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-133N23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-182N08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-079L07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-076A01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-301J18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-234E02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-165D17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-483O23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-144C18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-309K20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-498O08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-334F11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-133B16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-359B13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-144B12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-267P07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-298J05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-399I09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-109F24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-427D16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-309J19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-277F24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-451C04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-335P02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-372E21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-134B05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-315M13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-542G01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-526O03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-278J21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-163D16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-161K03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-124M16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-521B06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-279K09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-307E04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-233O07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-082F11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-081O19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-113E07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-298N18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-235D11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-391K01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-529M03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-418F06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-325J11
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-515P19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-331B10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-415A09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-092D06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-233O16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-172H04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-096D11
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-548A03
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-330N24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-149H13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-155N16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-401A14
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-401G21
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-097M15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-279O20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-452M07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-503L16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-379O06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-290B03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-075B23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-080D13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-188M09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-192H11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-106G16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-509H17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-294G08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-141B01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-127H01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-336P24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-406H12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-214B13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-306P08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-060O19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-191L20
singlet/doublet
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