BAC Information

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BAC

Clone NameB6Ng01-072O04
Chromosome8 (Build37)4 (Build37)
Map Location 117,577,513 - 117,578,57693,376,593 - 93,377,319
singlet/doubletsingletsinglet
Overlap geneWwox
Upstream geneNudt7, AI427515, Clec3a
Downstream geneMaf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072O04.bB6Ng01-072O04.g
ACCDH890172DH890173
length1,064939
definitionDH890172|Mus musculus domesticus DNA, BAC clone: B6Ng01-072O04, 5' end.DH890173|Mus musculus domesticus DNA, BAC clone: B6Ng01-072O04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(117,577,513 - 117,578,576)(93,376,593 - 93,377,319)
sequence
gaattcaaggaggaaaatgagagattgagtataaagactatgggcttcgg
ggtcagactagagtttcaatacttggaaagggctggtttgctcattgggc
aggtcttcgtgagcatacggagtgtgttaattagtcttctcatagctccc
acagaatgttcaacaggaacacattaagggaaaatgcctttatccttggc
tcacagtttccaacagaatttttaaatcatggtcaggatggcataacttc
atctgtggtagtgtgtggtggtttgaatatgcttggtccatagagatcag
cactgttagggggcatgaccttgttggaggaagtgtgtcactgtgtgggt
aggctttggaggtctcctcctagttgcctgcagaaaacagtctgtcctgg
ttgcctttgaatcaagatgcagaactctcagctccttctccagcaccatg
tctgcctgcatgctgccatgatacttgctatgatgatagtggactgaacc
cctgaaactgtaagccagctccaattgcccccatatcaattcacttttgt
cagccagaccccatgtctccatttcacctcaggtatacgtttcagacaag
ggcaaaaagcagcttcactcttcaccaaaccatcacaagaactgtgccta
ggccacattcttctctgaatcgtcttaagccagggccccacagttcaaac
caccctcagcaccagtgtcttccatgctccacctagttatggcccattaa
gccctgcttaaagcatcccactgctttcccaacccaaagtctcacagtcc
acatttctccaaacaaaagtagggtcaggcctgtcacagcaagacccgag
tccctagcactcacttctgtcttagaagagacaccatgactacagcaact
cttataaaggcaagcgtttaataggagcttgcttacatttcagagcttta
gtccattgtcgtggcaagaagcgtgaccgcacacagacagatatactggg
tacagcaggaagagaagtactgatcctggcctgagccctggaaacctgaa
agtccacactcaga
gaattccaggaaaaccagggctacacagagaaaccctatctcaaacaaac
aaacaaaaacaaaaaaccaaaccaaaccaaacaaaacaaggccaaaaata
aacatttgacaatagatataatcaaaaaatgtatataaaacattattgag
gtatttataagtatgaaaagatatatgttcttggaaatgggtgtgtgtgt
gtgtgtgtgtgtgtgtgagaataatgagcaaagacataacacttttaaaa
ttttatgccagcttgtagctaatgcaaatacttcaatgaggcaggaacct
gcccattgaacttttctcctgatagataatggcctatgattggatgttat
actttcagtcattcccaacacaaaaatgataatagacagggcctatagca
cttcctctctttaagagagataaaatttatatatcagtcctacttcataa
tgtgatagcaccaatcctttattctaaaagctttccacagaactgagact
agttcaacaagcattgccgtgctgaataccaaggtacgcagacatttgac
tagtctacagctgtttgtatttttaaatatttctttgttggttttatgtc
ataaatggaaattggctgtgatcatttaagagtctttttgcttttaaaca
ggtcctggcatacaaaccctattttgaaggtctagaagttagattccttg
gtgaacaaataggtagaggatccaaattaggtaggaaaggtggtagtaaa
aataactgattacatccttctctcctggtctgaagaaaaaccctggaatc
caaaaacaaaggctctgagaggaattacatatgccagaaatcgttgacac
ctgaacaagttaaaggattgatcagaattttattcagcagttgtggacca
atctcctgtcttgatttctccaactgatcagctctgatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_117577513_117578576
seq2: B6Ng01-072O04.b_44_1107

seq1  GAATTCAAGGAGGAAAATGAGAGATTGAGTATAAAGACTATGGGCTTCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGAGGAAAATGAGAGATTGAGTATAAAGACTATGGGCTTCGG  50

seq1  GGTCAGACTAGAGTTTCAATACTTGGAAAGGGCTGGTTTGCTCATTGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGACTAGAGTTTCAATACTTGGAAAGGGCTGGTTTGCTCATTGGGC  100

seq1  AGGTCTTCGTGAGCATACGGAGTGTGTTAATTAGTCTTCTCATAGCTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTCGTGAGCATACGGAGTGTGTTAATTAGTCTTCTCATAGCTCCC  150

seq1  ACAGAATGTTCAACAGGAACACATTAAGGGAAAATGCCTTTATCCTTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATGTTCAACAGGAACACATTAAGGGAAAATGCCTTTATCCTTGGC  200

seq1  TCACAGTTTCCAACAGAATTTTTAAATCATGGTCAGGATGGCATAACTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTTTCCAACAGAATTTTTAAATCATGGTCAGGATGGCATAACTTC  250

seq1  ATCTGTGGTAGTGTGTGGTGGTTTGAATATGCTTGGTCCATAGAGATCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGGTAGTGTGTGGTGGTTTGAATATGCTTGGTCCATAGAGATCAG  300

seq1  CACTGTTAGGGGGCATGACCTTGTTGGAGGAAGTGTGTCACTGTGTGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTAGGGGGCATGACCTTGTTGGAGGAAGTGTGTCACTGTGTGGGT  350

seq1  AGGCTTTGGAGGTCTCCTCCTAGTTGCCTGCAGAAAACAGTCTGTCCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTGGAGGTCTCCTCCTAGTTGCCTGCAGAAAACAGTCTGTCCTGG  400

seq1  TTGCCTTTGAATCAAGATGCAGAACTCTCAGCTCCTTCTCCAGCACCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTTGAATCAAGATGCAGAACTCTCAGCTCCTTCTCCAGCACCATG  450

seq1  TCTGCCTGCATGCTGCCATGATACTTGCTATGATGATAGTGGACTGAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTGCATGCTGCCATGATACTTGCTATGATGATAGTGGACTGAACC  500

seq1  CCTGAAACTGTAAGCCAGCTCCAATTGCCCCCATATCAATTCACTTTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAACTGTAAGCCAGCTCCAATTGCCCCCATATCAATTCACTTTTGT  550

seq1  CAGCCAGACCCCATGTCTCCATTTCACCTCAGGTATACGTTTCAGACAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGACCCCATGTCTCCATTTCACCTCAGGTATACGTTTCAGACAAG  600

seq1  GGCAAAAAGCAGCTTCACTCTTCACCAAACCATCACAAGAACTGTGCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAAGCAGCTTCACTCTTCACCAAACCATCACAAGAACTGTGCCTA  650

seq1  GGCCACATTCTTCTCTGAATCGTCTTAAGCCAGGGCCCCACAGTTCAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACATTCTTCTCTGAATCGTCTTAAGCCAGGGCCCCACAGTTCAAAC  700

seq1  CACCCTCAGCACCAGTGTCTTCCATGCTCCACCTAGTTATGGCCCATTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCAGCACCAGTGTCTTCCATGCTCCACCTAGTTATGGCCCATTAA  750

seq1  GCCCTGCTTAAAGCATCCCACTGCTTTCCCAACCCAAAGTCTCACAGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGCTTAAAGCATCCCACTGCTTTCCCAACCCAAAGTCTCACAGTCC  800

seq1  ACATTTCTCCAAACAAAAGTAGGGTCAGGCCTGTCACAGCAAGACCCGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCTCCAAACAAAAGTAGGGTCAGGCCTGTCACAGCAAGACCCGAG  850

seq1  TCCCTAGCACTCACTTCTGTCTTAGAAGAGACACCATGACTACAGCAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAGCACTCACTTCTGTCTTAGAAGAGACACCATGACTACAGCAACT  900

seq1  CTTATAAAGGCAAGCGTTTAATAGGAGCTTGCTTACATTTCAGAGCTTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAAAGGCAAGCGTTTAATAGGAGCTTGCTTACATTTCAGAGCTTTA  950

seq1  GTCCATTGTCGTGGCAGGAAGCGTGACCGCACACAGACAGATATACTGGG  1000
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTCCATTGTCGTGGCAAGAAGCGTGACCGCACACAGACAGATATACTGGG  1000

seq1  TACAGCAGGAAGAGAAGTACTGATCCTGGCCTGAGCCTTGGAAACCTGAA  1050
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TACAGCAGGAAGAGAAGTACTGATCCTGGCCTGAGCCCTGGAAACCTGAA  1050

seq1  AGTCCACACTCAGA  1064
      ||||||||||||||
seq2  AGTCCACACTCAGA  1064

seq1: chr4_93376593_93377319
seq2: B6Ng01-072O04.g_282_1001 (reverse)

seq1  AGAGCTGATCAGTTTGAAGAAAATTAGGACAGCTGATTGGTCCACAACTG  50
      |||||||||||||| ||   |||| | |||||  ||||||||||||||||
seq2  AGAGCTGATCAGTTGGA--GAAATCAAGACAGGAGATTGGTCCACAACTG  48

seq1  TTGAATAAAATATCTTGATCAAACCTTTAACTTGTTCAGCTAGTCTAAGG  100
       |||||||||| || ||||||| |||||||||||||||| | ||| || |
seq2  CTGAATAAAAT-TC-TGATCAATCCTTTAACTTGTTCAGGT-GTC-AACG  94

seq1  TCTGCTGGCAAAAGAAATTCCCCTCAAAGCCTTTGTTTTAGGATTCCAGG  150
        | |||||| | | |||||| |||| |||||||||||| ||||||||||
seq2  ATTTCTGGCATATGTAATTCCTCTCAGAGCCTTTGTTTTTGGATTCCAGG  144

seq1  GTTTTGCTTCAGATCAAGAGAGAAGGATGAAATCAGTTATTTTTACTACC  200
      ||||| ||||||| || |||||||||||| ||||||||||||||||||||
seq2  GTTTTTCTTCAGACCAGGAGAGAAGGATGTAATCAGTTATTTTTACTACC  194

seq1  AGCTTTCCTACCTAATTATGGATCCTCTACCTATCTGCTCACCAAGGAAT  250
      | ||||||||||||||| |||||||||||||||| || ||||||||||||
seq2  ACCTTTCCTACCTAATT-TGGATCCTCTACCTATTTGTTCACCAAGGAAT  243

seq1  CTAACTTCTAGACCTTCAAAATAGGGTTTGTATGCCAGGAACTGTTTAAA  300
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTAACTTCTAGACCTTCAAAATAGGGTTTGTATGCCAGGACCTGTTTAAA  293

seq1  AGCAAAATGACTCTTAAATGATCACAGCCAATTTCCATTTCTGACATAAA  350
      ||||||| |||||||||||||||||||||||||||||||| |||||||||
seq2  AGCAAAAAGACTCTTAAATGATCACAGCCAATTTCCATTTATGACATAAA  343

seq1  ACCAACAAAGAAATATTTAAAAATACAAACAGCTGTAGACTAGTCAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACAAAGAAATATTTAAAAATACAAACAGCTGTAGACTAGTCAAATG  393

seq1  TCTTTGTACCTTGGTATTCAGCACGGCAATGCTTGCTGAACTAGTCTCAG  450
      |||  |||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCTGCGTACCTTGGTATTCAGCACGGCAATGCTTGTTGAACTAGTCTCAG  443

seq1  TTCTGTGGAAAGCTTTTAGAATAAAGGATTGGTGCTATCACATTATGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGGAAAGCTTTTAGAATAAAGGATTGGTGCTATCACATTATGAAG  493

seq1  TAGGACTGATATATAAATTTTATCTCTCTTAAAGAGAGGAAGTGCTATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACTGATATATAAATTTTATCTCTCTTAAAGAGAGGAAGTGCTATAG  543

seq1  GCCCTCTCTATTATCATTTTTGTGTTGGGAATGACTGAAAGTATAACATC  600
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGTCTATTATCATTTTTGTGTTGGGAATGACTGAAAGTATAACATC  593

seq1  CAATCATAGGCCATTATCTATCAGGAGAAAAGTTCAATGGGCAGGTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCATAGGCCATTATCTATCAGGAGAAAAGTTCAATGGGCAGGTTCCT  643

seq1  GCCTCCTTGAAGAATTTGCCTTAGCTACAAGCTGGCATAAAATTTTAATA  700
      ||||| |||||| |||||| |||||||||||||||||||||||||||| |
seq2  GCCTCATTGAAGTATTTGCATTAGCTACAAGCTGGCATAAAATTTTAAAA  693

seq1  GTGTTATCTCGTTGCTCAATCTTCTCA  727
      ||||||| || ||||||| | ||||||
seq2  GTGTTATGTCTTTGCTCATTATTCTCA  720