BAC Information

Click to search

BAC

Clone NameB6Ng01-073B14
Chromosome8 (Build37)
Map Location 108,517,943 - 108,661,153
singlet/doubletdoublet
Overlap geneDpep2, Ddx28, Dus2l, Nfatc3, Rbm35b
Upstream geneLOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3
Downstream geneLypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073B14.bB6Ng01-073B14.g
ACCDH890328DH890329
length9701,040
definitionDH890328|Mus musculus domesticus DNA, BAC clone: B6Ng01-073B14, 5' end.DH890329|Mus musculus domesticus DNA, BAC clone: B6Ng01-073B14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,660,184 - 108,661,153)(108,517,943 - 108,518,994)
sequence
gaattccatgggtcttgcgtgacccttgcagaatggaaagaggcctctga
tcctgcacattcttttgcggaggactcagagtgcctgctagagaggaagt
aggagaaagaatggattcgtcccaggagtctcgccggactgcagcaagag
gtgggactccagccggcgagcgcacgcctcagcagaagtgagctcttgcc
tcctgggcagggttttggccctcccgcggggttccctgggccgtcctgat
cacgtggcctctccgggccgcaggtaactcgccggagtaggcagggatag
gcagccgcaccgcccagccccaaagggcaccgcgggcgggtctctgcagc
tcccactacacccggccgcaggtgccgcccccaacacaccggatcccgcc
caagctcgtctgtctgctgtcggtcggtacgtgtgtgcgcctcgtcggtc
cgcgtgtgtggccgagcgcccccttcctctgcggccatgactccgccgcc
gccgccgcccccacccccgggcccagatcccgcagtagactcggccacag
acccttgtcccgaacctcagtcgctggtggttttgttcggggccactgcc
ggtgcgctggggccggacctaggctcggacgagaccgacttaatcctcct
agtttggcaagtggtggagccgcgcagccgacaggtagggtgggaaagag
gggacctcgggacgcttcagagcctgttgaggcacagcggctcatggggt
taccctcggtgcttttaggtggggacgctgcacaagtcgctagttcgcgc
cgaggcggctgccctgagtccacaatgccgcgaggcgagtggactcagcg
cagacagcctagcgcgggcggagtccctggacaaagtgctgcaacaggtg
agcgtgggggcccgcgtgggtggtgggactgcggagtggcaaggacacta
cttcgagggggaggggagga
gaattcactctgtagaccaggctggcctcaaactcagaaatccgcctgcc
tctgcctcccaagtgctgggattaaaggtgtgtgccatcactgcccagcc
taattctggtcttattgaagagcaacaagtgctactgacctctgagtcat
ctctccagccctggccctattttgaagcaaatcacaaggctgggatctag
ttcagtagtagagggcttacctagagtgtgcaaagcttgagcaatagcta
cagggataagaggaaataaaaaaggtaaagaactcatagacacacattcc
atttatatgtaaatttttttcttagaaagtcagggcttttaaaagcaaat
cactataaaggcatctttaaaagctcatagtccattttctggtgttattt
cttgtatgtgtgtgtctgtatatgtgtatgcacatgtggctatacatgtg
ctatgggaagaacatggaggtcagaggacaccttgtgggcattagttctc
ttctctaccacgtgtgagctggggattaaactcaggcttggtggcaggtg
cctttacctgaccttcctaaaaaaaaatttttttttcttttttgagacag
agtctcactctgcagctcaggctggcatagaagttactctacagcacagg
caactctcaaacccatttcatttatcttgcctcagtctcccaagtgctga
gattacaggtgtgtgccactataccagattgtcctaaactgtcatgttca
gatcctcacaaccgccccctttctataactatttggatttcaatatgaaa
atgatgtatgatgatgaacacggtcctggttttagtttgcagctctgaaa
agaattgattctttgcaattgacttgttgaaaaaaattattagtttggtc
cttggcattttccatggtttgagtttactgtgatgttctatggtgctgat
gtgttcctcagtccttgttctccaataactggctattggaaagctttatt
acttgttattggaagtgtgtaaattttgtattaaccatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_108660184_108661153
seq2: B6Ng01-073B14.b_46_1015 (reverse)

seq1  TCCTCCCCTCCCCCTCGAAGTAGTGTCCCTGCCACTCCGCAGTTCCACCA  50
      |||||||||||||||||||||||||||| |||||||||||||| ||||||
seq2  TCCTCCCCTCCCCCTCGAAGTAGTGTCCTTGCCACTCCGCAGTCCCACCA  50

seq1  CCCACGCGGGCCCCCACGCTCACCTGTTGCAGCACTTTGTCCAGGGACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACGCGGGCCCCCACGCTCACCTGTTGCAGCACTTTGTCCAGGGACTC  100

seq1  CGCCCGCGCTAGGCTGTCTGCGCTGAGTCCACTCGCCTCGCGGCATTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCGCGCTAGGCTGTCTGCGCTGAGTCCACTCGCCTCGCGGCATTGTG  150

seq1  GACTCAGGGCAGCCGCCTCGGCGCGAACTAGCGACTTGTGCAGCGTCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGGGCAGCCGCCTCGGCGCGAACTAGCGACTTGTGCAGCGTCCCC  200

seq1  ACCTAAAAGCACCGAGGGTAACCCCATGAGCCGCTGTGCCTCAACAGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAAAGCACCGAGGGTAACCCCATGAGCCGCTGTGCCTCAACAGGCT  250

seq1  CTGAAGCGTCCCGAGGTCCCCTCTTTCCCACCCTACCTGTCGGCTGCGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCGTCCCGAGGTCCCCTCTTTCCCACCCTACCTGTCGGCTGCGCG  300

seq1  GCTCCACCACTTGCCAAACTAGGAGGATTAAGTCGGTCTCGTCCGAGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCACCACTTGCCAAACTAGGAGGATTAAGTCGGTCTCGTCCGAGCCT  350

seq1  AGGTCCGGCCCCAGCGCACCGGCAGTGGCCCCGAACAAAACCACCAGCGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCGGCCCCAGCGCACCGGCAGTGGCCCCGAACAAAACCACCAGCGA  400

seq1  CTGAGGTTCGGGACAAGGGTCTGTGGCCGAGTCTACTGCGGGATCTGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTTCGGGACAAGGGTCTGTGGCCGAGTCTACTGCGGGATCTGGGC  450

seq1  CCGGGGGTGGGGGCGGCGGCGGCGGCGGAGTCATGGCCGCAGAGGAAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGGGTGGGGGCGGCGGCGGCGGCGGAGTCATGGCCGCAGAGGAAGGG  500

seq1  GGCGCTCGGCCACACACGCGGACCGACGAGGCGCACACACGTACCGACCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCTCGGCCACACACGCGGACCGACGAGGCGCACACACGTACCGACCG  550

seq1  ACAGCAGACAGACGAGCTTGGGCGGGATCCGGTGTGTTGGGGGCGGCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGACAGACGAGCTTGGGCGGGATCCGGTGTGTTGGGGGCGGCACC  600

seq1  TGCGGCCGGGTGTAGTGGGAGCTGCAGAGACCCGCCCGCGGTGCCCTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGCCGGGTGTAGTGGGAGCTGCAGAGACCCGCCCGCGGTGCCCTTTG  650

seq1  GGGCTGGGCGGTGCGGCTGCCTATCCCTGCCTACTCCGGCGAGTTACCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGGCGGTGCGGCTGCCTATCCCTGCCTACTCCGGCGAGTTACCTG  700

seq1  CGGCCCGGAGAGGCCACGTGATCAGGACGGCCCAGGGAACCCCGCGGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCCGGAGAGGCCACGTGATCAGGACGGCCCAGGGAACCCCGCGGGAG  750

seq1  GGCCAAAACCCTGCCCAGGAGGCAAGAGCTCACTTCTGCTGAGGCGTGCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAAACCCTGCCCAGGAGGCAAGAGCTCACTTCTGCTGAGGCGTGCG  800

seq1  CTCGCCGGCTGGAGTCCCACCTCTTGCTGCAGTCCGGCGAGACTCCTGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCCGGCTGGAGTCCCACCTCTTGCTGCAGTCCGGCGAGACTCCTGGG  850

seq1  ACGAATCCATTCTTTCTCCTACTTCCTCTCTAGCAGGCACTCTGAGTCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAATCCATTCTTTCTCCTACTTCCTCTCTAGCAGGCACTCTGAGTCCT  900

seq1  CCGCAAAAGAATGTGCAGGATCAGAGGCCTCTTTCCATTCTGCAAGGGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAAAAGAATGTGCAGGATCAGAGGCCTCTTTCCATTCTGCAAGGGTC  950

seq1  ACGCAAGACCCATGGAATTC  970
      ||||||||||||||||||||
seq2  ACGCAAGACCCATGGAATTC  970

seq1: chr8_108517943_108518994
seq2: B6Ng01-073B14.g_70_1109

seq1  GAATTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCCTGCC  50

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGTGCCATCACTGCCCAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGTGCCATCACTGCCCAGCC  100

seq1  TAATTCTGGTCTTATTGAAGAGCAACAAGTGCTACTGACCTCTGAGTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTGGTCTTATTGAAGAGCAACAAGTGCTACTGACCTCTGAGTCAT  150

seq1  CTCTCCAGCCCTGGCCCTATTTTGAAGCAAATCACAAGGCTGGGATCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGCCCTGGCCCTATTTTGAAGCAAATCACAAGGCTGGGATCTAG  200

seq1  TTCAGTAGTAGAGGGCTTACCTAGAGTGTGCAAAGCTTGAGCAATAGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTAGTAGAGGGCTTACCTAGAGTGTGCAAAGCTTGAGCAATAGCTA  250

seq1  CAGGGATAAGAGGAAATAAAAAAGGTAAAGAACTCATAGACACACATTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATAAGAGGAAATAAAAAAGGTAAAGAACTCATAGACACACATTCC  300

seq1  ATTTATATGTAAATTTTTTTCTTAGAAAGTCAGGGCTTTTAAAAGCAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATGTAAATTTTTTTCTTAGAAAGTCAGGGCTTTTAAAAGCAAAT  350

seq1  CACTATAAAGGCATCTTTAAAAGCTCATAGTCCATTTTCTGGTGTTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATAAAGGCATCTTTAAAAGCTCATAGTCCATTTTCTGGTGTTATTT  400

seq1  CTTGTATGTGTGTGTCTGTATATGTGTATGCACATGTGGCTATACATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATGTGTGTGTCTGTATATGTGTATGCACATGTGGCTATACATGTG  450

seq1  CTATGGGAAGAACATGGAGGTCAGAGGACACCTTGTGGGCATTAGTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGGAAGAACATGGAGGTCAGAGGACACCTTGTGGGCATTAGTTCTC  500

seq1  TTCTCTACCACGTGTGAGCTGGGGATTAAACTCAGGCTTGGTGGCAGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTACCACGTGTGAGCTGGGGATTAAACTCAGGCTTGGTGGCAGGTG  550

seq1  CCTTTACCTGACCTTCCTAAAAAAAAATTTTTTTTTCTTTTTTGAGACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACCTGACCTTCCTAAAAAAAAATTTTTTTTTCTTTTTTGAGACAG  600

seq1  AGTCTCACTCTGCAGCTCAGGCTGGCATAGAAGTTACTCTACAGCACAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCACTCTGCAGCTCAGGCTGGCATAGAAGTTACTCTACAGCACAGG  650

seq1  CAACTCTCAAACCCATTTCATTTATCTTGCCTCAGTCTCCCAAGTGCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTCAAACCCATTTCATTTATCTTGCCTCAGTCTCCCAAGTGCTGA  700

seq1  GATTACAGGTGTGTGCCACTATACCAGATTGTCCTAAACTGTCATGTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACAGGTGTGTGCCACTATACCAGATTGTCCTAAACTGTCATGTTCA  750

seq1  GATCCTCACAACCGCCCCCTTTCTATAACTATTTGGATTTCAATATGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCACAACCGCCCCCTTTCTATAACTATTTGGATTTCAATATGAAA  800

seq1  ATGATGTATGATGATGAACACGGTCCTGG-TTTAGTTTGCAGCTCTGAAA  849
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATGATGTATGATGATGAACACGGTCCTGGTTTTAGTTTGCAGCTCTGAAA  850

seq1  AGAATTGATTCTTTGCAATTGACTTGTTGAAAAAAAATTATTAGTTTGGT  899
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGAATTGATTCTTTGCAATTGACTTGTTG-AAAAAAATTATTAGTTTGGT  899

seq1  CCTTGGCATTTTCCATGGTTTTGAGTTTACTGGTGATGTTCTATGGTGTC  949
      |||||||||||||||||| |||||||||||| |||||||||||||||| |
seq2  CCTTGGCATTTTCCATGG-TTTGAGTTTACT-GTGATGTTCTATGGTG-C  946

seq1  TGATGTGTTCCTCAGTTCCTTGTTTCTCCTATAAACTGGCTTATTGGGAA  999
      ||||||||||||||| |||||| |||||| || ||||||| |||| ||||
seq2  TGATGTGTTCCTCAG-TCCTTG-TTCTCCAAT-AACTGGC-TATT-GGAA  991

seq1  AGCTTTTATTTACTTGTTTATTTGGAAGTGTGTAAGTTTTGTATTAACCA  1049
      ||||||   |||||||||   |||||||||||||| ||||||||||||||
seq2  AGCTTT--ATTACTTGTT--ATTGGAAGTGTGTAAATTTTGTATTAACCA  1037

seq1  TCC  1052
      |||
seq2  TCC  1040