BAC Information

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BAC

Clone NameB6Ng01-078M02
Chromosome8 (Build37)
Map Location 108,657,367 - 108,804,203
singlet/doubletdoublet
Overlap geneRbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3
Upstream geneBC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3
Downstream geneZfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078M02.bB6Ng01-078M02.g
ACCDH894366DH894367
length1,2191,154
definitionDH894366|Mus musculus domesticus DNA, BAC clone: B6Ng01-078M02, 5' end.DH894367|Mus musculus domesticus DNA, BAC clone: B6Ng01-078M02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,657,367 - 108,658,634)(108,803,041 - 108,804,203)
sequence
gaattcctcccctgtggctttatatacctgcaggtagagaaaccagccca
taggtctcagcccttactcagttttgccctgctccacttctagccaaaag
ccccacctcaatatagcggacacccatgtggtgtttgtgtctctgcagcg
ctaggtcccgctgctcgctgtccacgaatcggatgagggcctcgccattt
ctgcggccctgggcgttgagacagagggccacaccacccctgtggagccg
ggtgttgttagtgcctcctgggtaggcttgccctcttacccctcccatcc
tgtcacacccacctggcaatgttgagccctttgaagaatcgagccacatc
ctggtctgatgattgccagggcaacccacgggcccgtactacagtctcat
tgtccaccacatcagccttgctgctgtggggggcagggcaaaggatcaga
aatgtccaaggattgtcacccccatcccagctcctacactcaccaagggc
ctgtctcgtatttctgctttaccacttctggcttcgagaacaactgacct
gagaggagatggcatgggggtcagcagggtctggtggaggaagtctctcc
accaagctcagcaaaaataggaccggtgagggcattgaggacgcggcaga
ggggtttctaccttgtgttctcttagagaaggtcacaagtcagcaagggg
actctgttgaagggatgggcactcacccagtcctgacagtagctggcaag
cagggcaagaatcttaccattggacccttcaagtaggtggagaataacag
ctaccatagtcttcacttcccagaccccaaagtcatcttcggtagcatct
gtttctagtcccaagtctataggcagagaagtgacaactgaggtccaggt
ctgtacatcccacgtcaccccgaaacacccagagatcctagcaaacacta
gttgtggcccagtcatacatgtacctacaggtctcagacaaacacagaca
tgtcacattcaaatgtatcccaaagaatgagctaaaacatagactgtcta
cattcatacagcccatacgcatcatgcacaatgcttgaaatattagtcac
cccctccaactattgatggtcacagatccctgtgcaatgtgccactgtaa
gcctgcggaacagtgctgggttcgctatgaatctgcgaagtctgtaagga
agaaaggttctgggagcac
gaattcctaccagagagagaatcaaaccactgagctctcagaatccagga
atgaaagtggacactagggacacaaagtgatccccagagtcaagaacctc
gggccaagagacaggcagcaagacccctgtaagaacccttcccaactact
gacagagtgttttctgggctgccaaggtcaccaggccaggagcaaggaga
tttagggtcccaggtagtggtgattgtatgaaaaaatgttaagaggacct
gataaagccaggatccataggaagggagaaagctcactggagactgcatc
aggggccccgtcattgatgggcagaacctttgggagaataaaacaaggca
gggatcctatcctgtgcacacagggagggcagggcagacaggttagggac
aatggtattcttccccgggactcaggctgatgtaaggtcaccggcactga
gtgggtctgaagatgtttgcttatcatttatactcggcctttgtgagaga
ggcagagagaagggaaacgggtcaaatgattcagctgctgcctctcagga
agtgccattcatgtccctgaatcagtttcctcatctgtacagtggggtca
gctgcacccatttagtgtctgaggtactgacttagtgataagaacacatt
ctccaaaggcgttggacaactaactattcacacggccccaaaaggcagat
ccattatttctgctttctctgctcatttccagtctccttcaggtctttac
catgtcctggttcttggctgtgccccatctcaacatacagagagaaagga
aggaaagggaggaagtctgagctcccgagtgactgcaggtgtctctgagg
agctgaagccattctggccgtggttcaagggtcaggtgcacagggttgcc
cctgtcagcaggtagcagcttcctgttacgtcccgaccagcacacaatta
gggcagatgatgtctgtgggcaggagtggggcattgacctcgctcctcat
cggtcctcagaagttagaaaaaagtgccttcttcttctgagaggagggaa
tatcactccctggtcttagtcttaagaaacaacctaccagaacccacttg
ctttaagattgggatgtgtttgaacataccttgagcctcagtcgaaagaa
ggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_108657367_108658634
seq2: B6Ng01-078M02.b_45_1263

seq1  GAATTCCTCCCCTGTGGCTTTATATACCTGCAGGTAGAGAAACCAGCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCCCTGTGGCTTTATATACCTGCAGGTAGAGAAACCAGCCCA  50

seq1  TAGGTCTCAGCCCTTACTCAGTTTTGCCCTGCTCCACTTCTAGCCAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCTCAGCCCTTACTCAGTTTTGCCCTGCTCCACTTCTAGCCAAAAG  100

seq1  CCCCACCTCAATATAGCGGACACCCATGTGGTGTTTGTGTCTCTGCAGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCTCAATATAGCGGACACCCATGTGGTGTTTGTGTCTCTGCAGCG  150

seq1  CTAGGTCCCGCTGCTCGCTGTCCACGAATCGGATGAGGGCCTCGCCATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTCCCGCTGCTCGCTGTCCACGAATCGGATGAGGGCCTCGCCATTT  200

seq1  CTGCGGCCCTGGGCGTTGAGACAGAGGGCCACACCACCCCTGTGGAGCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGGCCCTGGGCGTTGAGACAGAGGGCCACACCACCCCTGTGGAGCCG  250

seq1  GGTGTTGTTAGTGCCTCCTGGGTAGGCTTGCCCTCTTACCCCTCCCATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTGTTAGTGCCTCCTGGGTAGGCTTGCCCTCTTACCCCTCCCATCC  300

seq1  TGTCACACCCACCTGGCAATGTTGAGCCCTTTGAAGAATCGAGCCACATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACACCCACCTGGCAATGTTGAGCCCTTTGAAGAATCGAGCCACATC  350

seq1  CTGGTCTGATGATTGCCAGGGCAACCCACGGGCCCGTACTACAGTCTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTGATGATTGCCAGGGCAACCCACGGGCCCGTACTACAGTCTCAT  400

seq1  TGTCCACCACATCAGCCTTGCTGCTGTGGGGGGCAGGGCAAAGGATCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCACCACATCAGCCTTGCTGCTGTGGGGGGCAGGGCAAAGGATCAGA  450

seq1  AATGTCCAAGGATTGTCACCCCCATCCCAGCTCCTACACTCACCAAGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCAAGGATTGTCACCCCCATCCCAGCTCCTACACTCACCAAGGGC  500

seq1  CTGTCTCGTATTTCTGCTTTACCACTTCTGGCTTCGAGAACAACTGACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCGTATTTCTGCTTTACCACTTCTGGCTTCGAGAACAACTGACCT  550

seq1  GAGAGGAGATGGCATGGGGGTCAGCAGGGTCTGGTGGAGGAAGTCTCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAGATGGCATGGGGGTCAGCAGGGTCTGGTGGAGGAAGTCTCTCC  600

seq1  ACCAAGCTCAGCAAAAATAGGACCGGTGAGGGCATTGAGGACGCGGCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCTCAGCAAAAATAGGACCGGTGAGGGCATTGAGGACGCGGCAGA  650

seq1  GGGGTTTCTACCTTGTGTTCTCTTAGAGAAGGTCACAAGTCAGCAAGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTTCTACCTTGTGTTCTCTTAGAGAAGGTCACAAGTCAGCAAGGGG  700

seq1  ACTCTGTTGAAGGGATGGGCACTCACCCAGTCCTGACAGTAGCTGGCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTTGAAGGGATGGGCACTCACCCAGTCCTGACAGTAGCTGGCAAG  750

seq1  CAGGGCAAGAATCTTACCATTGGACCCTTCAAGTAGGTGGAGAATAACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCAAGAATCTTACCATTGGACCCTTCAAGTAGGTGGAGAATAACAG  800

seq1  CTACCATAGTCTTCACTTCCCAGACCCCAAAGTCATCTTCGGTAGCATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCATAGTCTTCACTTCCCAGACCCCAAAGTCATCTTCGGTAGCATCT  850

seq1  GTTTCTAGTCCCAAGTCTATAGGCAGAGAAGTGACAACTGAGGTCCAGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTAGTCCCAAGTCTATAGGCAGAGAAGTGACAACTGAGGTCCAGGT  900

seq1  CTGTACATCCCACGTCACCCCGAAACACCCAGAGAATCCTAGCAAACACT  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTGTACATCCCACGTCACCCCGAAACACCCAGAG-ATCCTAGCAAACACT  949

seq1  AGTTGTGGCCCAGTTCATACATGTACCTACAGGTCCTCAGACCAAACACA  1000
      ||||||||||||| |||||||||||||||||||| |||||| ||||||||
seq2  AGTTGTGGCCCAG-TCATACATGTACCTACAGGT-CTCAGA-CAAACACA  996

seq1  GACATGTCCACATTCCAAATGTATCCCAAAGAATGAGGCTAAAAACATAG  1050
      ||||||| |||||| ||||||||||||||||||||| ||| |||||||||
seq2  GACATGT-CACATT-CAAATGTATCCCAAAGAATGA-GCT-AAAACATAG  1042

seq1  ACCTGTCTACATTCATACAGCCCATACGGCATCATGCAC-ATGCTTGGAC  1099
      | ||||||||||||||||||||||||| ||||||||||| |||||| || 
seq2  A-CTGTCTACATTCATACAGCCCATAC-GCATCATGCACAATGCTT-GAA  1089

seq1  ATATTAGTCA-CCCCTCCACCTTAATTTTGATGGGTCACAGATACCCTGT  1148
      |||||||||| ||||||||    | | ||||| |||||||||| ||||||
seq2  ATATTAGTCACCCCCTCCA----ACTATTGAT-GGTCACAGAT-CCCTGT  1133

seq1  GCCATGGTGCCCACTGTGAGGTCTCTGGCGGAGCAGGTGCTTGGGTGCTG  1198
      || || ||| ||||||| ||    |  ||||| || |||| ||||| | |
seq2  GCAAT-GTG-CCACTGTAAG----CCTGCGGAACA-GTGC-TGGGTTC-G  1174

seq1  CATATGGAATTCTCTGCGGAGGTCGTAGAAGGAGAAGAAGGTGTCGGGGA  1248
      | |||| |    |||||| ||   ||  |||  ||||||           
seq2  C-TATGAA----TCTGCGAAGTCTGT--AAG--GAAGAA-----------  1204

seq1  GCACCAGGTTCTGGGAGCAC  1268
           |||||||||||||||
seq2  -----AGGTTCTGGGAGCAC  1219

seq1: chr8_108803041_108804203
seq2: B6Ng01-078M02.g_67_1220 (reverse)

seq1  TTCCTTCTTTTCTGACTGGAGGCTCAAGCTATGT--CAACACATCCCATA  48
      ||||||||||   |||| |||||||||| |||||   |||||||||||  
seq2  TTCCTTCTTT--CGACT-GAGGCTCAAGGTATGTTCAAACACATCCCAAT  47

seq1  CTTTAAGCAAGTGGGGTCTGGTAGGTTGTTTCTTAAGACCTGAGGACCAA  98
      ||| ||||||||||| |||||||||||||||||||||||   | ||||| 
seq2  CTTAAAGCAAGTGGGTTCTGGTAGGTTGTTTCTTAAGAC--TAAGACCAG  95

seq1  GGAGTGATATTCCACTCCTCTCAGAGGAAGAAGGCACTGTTTTCTAAC-T  147
      ||||||||||||| ||||||||||| |||||||||||| ||||||||| |
seq2  GGAGTGATATTCC-CTCCTCTCAGAAGAAGAAGGCACTTTTTTCTAACTT  144

seq1  CTGAGGACCGATGAGGAGCGAGGTCAATGCCCCACTCCTGCCCACAGACA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGACCGATGAGGAGCGAGGTCAATGCCCCACTCCTGCCCACAGACA  194

seq1  TCATCTGCCCCTAATTGTGTGGCTGGTCGGGACGTAACAGGAAGCCTGCT  247
      ||||||| |||||||||||| ||||||||||||||||||||||| |||||
seq2  TCATCTG-CCCTAATTGTGT-GCTGGTCGGGACGTAACAGGAAG-CTGCT  241

seq1  ACCTGCCTGACAGGGGCAACCCTGTGCACCCTGACCCTTGAACCACGGCC  297
      ||||| |||||||||||||||||||||| |||||||||||||||||||||
seq2  ACCTG-CTGACAGGGGCAACCCTGTGCA-CCTGACCCTTGAACCACGGCC  289

seq1  AGAATGGCTTCAGCTCCTCAGAGACACCTGCAGTCACTCGGGAGCTCAGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGCTTCAGCTCCTCAGAGACACCTGCAGTCACTCGGGAGCTCAGA  339

seq1  CTTCCTCCCCTTCCCTTCCTTTCTCTCTGTATGTTGAGATGGGGCACAGC  397
      |||||| ||||| |||||||||||||||||||||||||||||||||||||
seq2  CTTCCT-CCCTTTCCTTCCTTTCTCTCTGTATGTTGAGATGGGGCACAGC  388

seq1  CAAGAACCAGGACATGGTAAAGACCTGAAGGAGACTGGAAATGAGCAGAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACCAGGACATGGTAAAGACCTGAAGGAGACTGGAAATGAGCAGAG  438

seq1  AAAGCAGAAATAATGGATCTGCCTTTTGGGGCCGTGTGAATAGTTAGTTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGAAATAATGGATCTGCCTTTTGGGGCCGTGTGAATAGTTAGTTG  488

seq1  TCCAACGCCTTTGGAGAATGTGTTCTTATCACTAAGTCAGTACCTCAGAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACGCCTTTGGAGAATGTGTTCTTATCACTAAGTCAGTACCTCAGAC  538

seq1  ACTAAATGGGTGCAGCTGACCCCACTGTACAGATGAGGAAACTGATTCAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATGGGTGCAGCTGACCCCACTGTACAGATGAGGAAACTGATTCAG  588

seq1  GGACATGAATGGCACTTCCTGAGAGGCAGCAGCTGAATCATTTGACCCGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATGAATGGCACTTCCTGAGAGGCAGCAGCTGAATCATTTGACCCGT  638

seq1  TTCCCTTCTCTCTGCCTCTCTCACAAAGGCCGAGTATAAATGATAAGCAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTCTCTCTGCCTCTCTCACAAAGGCCGAGTATAAATGATAAGCAA  688

seq1  ACATCTTCAGACCCACTCAGTGCCGGTGACCTTACATCAGCCTGAGTCCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTCAGACCCACTCAGTGCCGGTGACCTTACATCAGCCTGAGTCCC  738

seq1  GGGGAAGAATACCATTGTCCCTAACCTGTCTGCCCTGCCCTCCCTGTGTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGAATACCATTGTCCCTAACCTGTCTGCCCTGCCCTCCCTGTGTG  788

seq1  CACAGGATAGGATCCCTGCCTTGTTTTATTCTCCCAAAGGTTCTGCCCAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGATAGGATCCCTGCCTTGTTTTATTCTCCCAAAGGTTCTGCCCAT  838

seq1  CAATGACGGGGCCCCTGATGCAGTCTCCAGTGAGCTTTCTCCCTTCCTAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACGGGGCCCCTGATGCAGTCTCCAGTGAGCTTTCTCCCTTCCTAT  888

seq1  GGATCCTGGCTTTATCAGGTCCTCTTAACATTTTTTCATACAATCACCAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTGGCTTTATCAGGTCCTCTTAACATTTTTTCATACAATCACCAC  938

seq1  TACCTGGGACCCTAAATCTCCTTGCTCCTGGCCTGGTGACCTTGGCAGCC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGGACCCTAAATCTCCTTGCTCCTGGCCTGGTGACCTTGGCAGCC  988

seq1  CAGAAAACACTCTGTCAGTAGTTGGGAAGGGTTCTTACAGGGGTCTTGCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAACACTCTGTCAGTAGTTGGGAAGGGTTCTTACAGGGGTCTTGCT  1038

seq1  GCCTGTCTCTTGGCCCGAGGTTCTTGACTCTGGGGATCACTTTGTGTCCC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTCTCTTGGCCCGAGGTTCTTGACTCTGGGGATCACTTTGTGTCCC  1088

seq1  TAGTGTCCACTTTCATTCCTGGATTCTGAGAGCTCAGTGGTTTGATTCTC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTCCACTTTCATTCCTGGATTCTGAGAGCTCAGTGGTTTGATTCTC  1138

seq1  TCTCTGGTAGGAATTC  1163
      ||||||||||||||||
seq2  TCTCTGGTAGGAATTC  1154