BAC Information

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BAC

Clone NameB6Ng01-080M03
Chromosome8 (Build37)
Map Location 86,896,958 - 87,053,411
singlet/doubletdoublet
Overlap geneCacna1a
Upstream gene4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130
Downstream geneIer2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik, 4921524J17Rik, Gpt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080M03.bB6Ng01-080M03.g
ACCDH895805DH895806
length1,1181,062
definitionDH895805|Mus musculus domesticus DNA, BAC clone: B6Ng01-080M03, 5' end.DH895806|Mus musculus domesticus DNA, BAC clone: B6Ng01-080M03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,896,958 - 86,898,082)(87,052,354 - 87,053,411)
sequence
gaattcacccattttgtcctctctgttgagaactcatccctgtgataatc
aaacttggcgttgagttccctgtggttgctcaccctagagacctcctaag
gtgcccaaatatgtgtttattttctgggtcaaggagaagtccagctatgc
aaagcaacagacagggccccgggtgctcatagtctctacagaaacagaac
tctggacctaaagcatgctatccaaatgagggaggaaaggagcaatggag
ggagggagagaaggagagagtgaaagacagacagacagacagacagacac
acacacacacacacacacagagagagagagagagagagacagagagagac
agagacagagacagagacagagacagagaggtaccaaggtactgcgctca
gaggaattcatctttgaacttctacaatgagggttgcagacccaaaaaag
cccctgtgataatttgaagatacaagagccacagcaccagtgatgtgggg
tctagtctaacaaccagttttccagagaactcatgctggcccagaaacct
agcccactcctgggagacatcaggaatttatgggcggagtctcaccagtg
cttccctcccacttagaggccccatcacctcaacactattgcgctgggga
ccaggctccatgaagaagggtaaaacagacaggtggagccaagcagagac
tcttaaagctttggctgagatttttccctggtcacatgaccgtgctgcat
tgcaaaggtggctgagaaaccgtcagcgcctgtgcccaggcttcagactg
ccacgggcagcttcctgagtgaagatgactgatttgggacacacttgaca
acctttctctgtgacgctttccgccccggtgaggagcagcagctcatagc
ctgcctgtcctgccctctggctgcacccaaaaagccttcctggcttgctc
cccaggcagtgctgtccacagccccggggcttgctgttcttcagcaccga
aaacatggaagaatccaccagtttttcttcctttcctcttagaagccact
tttctgatccggaaagcggcctaaactgccaactagacggtcatcacaga
accctgcggcggtcaggt
gaattccaggacagtgtatattcattcatttgtcctctcaggtgggaaac
tgagacctagagaggcagactcacatgctcactgtcctttgccccatgga
gtgtcctgtgaaggtgtctaagccagatctcccagatcctatgagtgata
cctggagtctctgcacgtgttaccatgtctagatgcagtcatcagggcag
gccctaaccgtgtgaccagtgtcctcttaaaaaggggtcagtcaggacac
agagacagacacacatggaaggactgaacaagggggaggtgaagacaggg
atggaaggctgttagctggggaggagaccggaaaggatcccattcaggtg
tgggtgtctgagcgatcacacaaccctgctgacatcttagccatggtcct
ttggcctccagagctaggacagaacaggtttctgttgttttaagtcactt
atcttgttggaagaggggacggggaaaggacaggtcctttagagacacag
ccctgtgccctgcttcctcacctaagctctgatttgcattgtctacccag
gtgtaagttcacccacagatgaaccccttgagggggcctgcatctcagtc
tctcagctaggaccacatcttcaacacagcatctgttttgggcaacatgt
tacacgaaagcaactgctggggtaaaaacccaaaagaagcagctcaaggg
gcacgtgtgtctgagctcaaatgtcagcagtacagttcctcatggtgtgg
gtgtcaaggcagcaagggcttgaagcagctgccacactgccgccaggaag
cagagagacatgtgtgcctttgttttctccttcctctggaatggtttgtt
ccccttggtagccacttaaaggtctttcttcctcagggaaccttaaccaa
gatggtcctttccaagtgtggctagaggtatgcccccctgggtgatgtcc
tgtcccactgacaatgctcaccatcattatcttggtctttgcttccgtag
tacccttttcagacaaatttctgattctcacacttatgagtaccccagta
gttgtttgttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_86896958_86898082
seq2: B6Ng01-080M03.b_49_1166

seq1  GAATTCACCCATTTTGTCCTCTCTGTTGAGAACTCATCCCTGTGATAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCATTTTGTCCTCTCTGTTGAGAACTCATCCCTGTGATAATC  50

seq1  AAACTTGGCGTTGAGTTCCCTGTGGTTGCTCACCCTAGAGACCTCCTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGGCGTTGAGTTCCCTGTGGTTGCTCACCCTAGAGACCTCCTAAG  100

seq1  GTGCCCAAATATGTGTTTATTTTCTGGGTCAAGGAGAAGTCCAGCTATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCAAATATGTGTTTATTTTCTGGGTCAAGGAGAAGTCCAGCTATGC  150

seq1  AAAGCAACAGACAGGGCCCCGGGTGCTCATAGTCTCTACAGAAACAGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAACAGACAGGGCCCCGGGTGCTCATAGTCTCTACAGAAACAGAAC  200

seq1  TCTGGACCTAAAGCATGCTATCCAAATGAGGGAGGAAAGGAGCAATGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGACCTAAAGCATGCTATCCAAATGAGGGAGGAAAGGAGCAATGGAG  250

seq1  GGAGGGAGAGAAGGAGAGAGTGAAAGACAGACAGACAGACAGACAGACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAGAGAAGGAGAGAGTGAAAGACAGACAGACAGACAGACAGACAC  300

seq1  ACACACACACACACACACAGAGAGAGAGAGAGAGAGAGACAGAGAGAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACAGAGAGAGAGAGAGAGAGAGACAGAGAGAGAC  350

seq1  AGAGACAGAGACAGAGACAGAGACAGAGAGGTACCAAGGTACTGCGCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGAGACAGAGACAGAGACAGAGAGGTACCAAGGTACTGCGCTCA  400

seq1  GAGGAATTCATCTTTGAACTTCTACAATGAGGGTTGCAGACCCAAAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATTCATCTTTGAACTTCTACAATGAGGGTTGCAGACCCAAAAAAG  450

seq1  CCCCTGTGATAATTTGAAGATACAAGAGCCACAGCACCAGTGATGTGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGTGATAATTTGAAGATACAAGAGCCACAGCACCAGTGATGTGGGG  500

seq1  TCTAGTCTAACAACCAGTTTTCCAGAGAACTCATGCTGGCCCAGAAACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTCTAACAACCAGTTTTCCAGAGAACTCATGCTGGCCCAGAAACCT  550

seq1  AGCCCACTCCTGGGAGACATCAGGAATTTATGGGCGGAGTCTCACCAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCACTCCTGGGAGACATCAGGAATTTATGGGCGGAGTCTCACCAGTG  600

seq1  CTTCCCTCCCACTTAGAGGCCCCATCACCTCAACACTATTGCGCTGGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTCCCACTTAGAGGCCCCATCACCTCAACACTATTGCGCTGGGGA  650

seq1  CCAGGCTCCATGAAGAAGGGTAAAACAGACAGGTGGAGCCAAGCAGAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTCCATGAAGAAGGGTAAAACAGACAGGTGGAGCCAAGCAGAGAC  700

seq1  TCTTAAAGCTTTGGCTGAGATTTTTCCCTGGTCACATGACCGTGCTGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAGCTTTGGCTGAGATTTTTCCCTGGTCACATGACCGTGCTGCAT  750

seq1  TGCAAAGGTGGCTGAGAAACCGTCAGCGCCTGTGCCCAGGCTTCAGACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGGTGGCTGAGAAACCGTCAGCGCCTGTGCCCAGGCTTCAGACTG  800

seq1  CCACGGGCAGCTTCCTGAGTGAAGATGACTGATTTGGGACACACTTGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGGCAGCTTCCTGAGTGAAGATGACTGATTTGGGACACACTTGACA  850

seq1  ACCTTTCTCTGTGACGCTTTCCGCCCCGGTGAGGAGCAGCAGGCTCATAG  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACCTTTCTCTGTGACGCTTTCCGCCCCGGTGAGGAGCAGCA-GCTCATAG  899

seq1  CCTGCCTGTCCTGCCCTCTGGCTGCACCCAAAAAAGCCTTCCTGGCTTGC  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCTGCCTGTCCTGCCCTCTGGCTGCACCC-AAAAAGCCTTCCTGGCTTGC  948

seq1  TCCCCAGGGCAGTGCTGTCCACAGCCCCGGGGCTTGCTGTTCTTCAGCA-  999
      |||||| |||||||||||||||||||||||||||||||||||||||||| 
seq2  TCCCCA-GGCAGTGCTGTCCACAGCCCCGGGGCTTGCTGTTCTTCAGCAC  997

seq1  CGGAGACATGGAGAAATCCACCAGTTTTTCCTCCTTTTCTCTTTAGAGGC  1049
      || | |||||||  |||||||||||||||| |||||| ||| ||||| ||
seq2  CGAAAACATGGAAGAATCCACCAGTTTTTCTTCCTTTCCTC-TTAGAAGC  1046

seq1  CACTTTTCTGGATCCGGAAAGCGGCCTAAACCTGCCAACTAGACAGTCCA  1099
      ||||||||| |||||||||||||||||||| ||||||||||||| |||  
seq2  CACTTTTCT-GATCCGGAAAGCGGCCTAAA-CTGCCAACTAGACGGTC--  1092

seq1  TTCACAGAACACTGCGGCGTTCAGGT  1125
       ||||||||| |||||||| ||||||
seq2  ATCACAGAACCCTGCGGCGGTCAGGT  1118

seq1: chr8_87052354_87053411
seq2: B6Ng01-080M03.g_69_1130 (reverse)

seq1  CCAACAAAC--TTACTGGGGTTACTCATAAGTGTGGAGATACAGAAATGT  48
      |||||||||   |||||||| ||||||||||||| ||||  ||||||| |
seq2  CCAACAAACAACTACTGGGG-TACTCATAAGTGT-GAGAATCAGAAATTT  48

seq1  GTCTGACAGAGGGTTACTACGGAAGCAAAGA-CAAGAT-ATGATGGTGAG  96
      |||||| | |||| ||||||||||||||||| |||||| |||||||||||
seq2  GTCTGA-AAAGGG-TACTACGGAAGCAAAGACCAAGATAATGATGGTGAG  96

seq1  CATTGTCAGTGTGACAGGACATCACCCA-GGGGGCATACCTCTAGCCACA  145
      ||||||||||| |||||||||||||||| |||||||||||||||||||||
seq2  CATTGTCAGTGGGACAGGACATCACCCAGGGGGGCATACCTCTAGCCACA  146

seq1  CTTGGAAAGGACCATCTTGGTT-AGGTTCCCTGAGGAAGAAAGACC-TTC  193
      |||||||||||||||||||||| ||||||||||||||||||||||| || 
seq2  CTTGGAAAGGACCATCTTGGTTAAGGTTCCCTGAGGAAGAAAGACCTTTA  196

seq1  AGTGGCTACCAAGGGGAACAAACCATTCCAGAGGAAGGAG-AAACAAAGG  242
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGTGGCTACCAAGGGGAACAAACCATTCCAGAGGAAGGAGAAAACAAAGG  246

seq1  CACACATGTCTCTCTGCTTCCTGGCGGCAGTGTGGCAGCTGCTTCAAGCC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATGTCTCTCTGCTTCCTGGCGGCAGTGTGGCAGCTGCTTCAAGCC  296

seq1  CCTGCTGCCTTGACACCCACACCATGAGGAACTGTACTGCTGACATTTGA  342
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGCCTTGACACCCACACCATGAGGAACTGTACTGCTGACATTTGA  346

seq1  GCTCAGACACACGTGCCCCTTGAGCTGCTTCTTTTGGGTTTTTACCCCAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGACACACGTGCCCCTTGAGCTGCTTCTTTTGGGTTTTTACCCCAG  396

seq1  CAGTTGCTTTCGTGTAACATGTTGCCCAAAACAGATGCTGTGTTGAAGAT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGCTTTCGTGTAACATGTTGCCCAAAACAGATGCTGTGTTGAAGAT  446

seq1  GTGGTCCTAGCTGAGAGACTGAGATGCAGGCCCCCTCAAGGGGTTCATCT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCCTAGCTGAGAGACTGAGATGCAGGCCCCCTCAAGGGGTTCATCT  496

seq1  GTGGGTGAACTTACACCTGGGTAGACAATGCAAATCAGAGCTTAGGTGAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGAACTTACACCTGGGTAGACAATGCAAATCAGAGCTTAGGTGAG  546

seq1  GAAGCAGGGCACAGGGCTGTGTCTCTAAAGGACCTGTCCTTTCCCCGTCC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGGGCACAGGGCTGTGTCTCTAAAGGACCTGTCCTTTCCCCGTCC  596

seq1  CCTCTTCCAACAAGATAAGTGACTTAAAACAACAGAAACCTGTTCTGTCC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCCAACAAGATAAGTGACTTAAAACAACAGAAACCTGTTCTGTCC  646

seq1  TAGCTCTGGAGGCCAAAGGACCATGGCTAAGATGTCAGCAGGGTTGTGTG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTGGAGGCCAAAGGACCATGGCTAAGATGTCAGCAGGGTTGTGTG  696

seq1  ATCGCTCAGACACCCACACCTGAATGGGATCCTTTCCGGTCTCCTCCCCA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCTCAGACACCCACACCTGAATGGGATCCTTTCCGGTCTCCTCCCCA  746

seq1  GCTAACAGCCTTCCATCCCTGTCTTCACCTCCCCCTTGTTCAGTCCTTCC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACAGCCTTCCATCCCTGTCTTCACCTCCCCCTTGTTCAGTCCTTCC  796

seq1  ATGTGTGTCTGTCTCTGTGTCCTGACTGACCCCTTTTTAAGAGGACACTG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTCTGTCTCTGTGTCCTGACTGACCCCTTTTTAAGAGGACACTG  846

seq1  GTCACACGGTTAGGGCCTGCCCTGATGACTGCATCTAGACATGGTAACAC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACACGGTTAGGGCCTGCCCTGATGACTGCATCTAGACATGGTAACAC  896

seq1  GTGCAGAGACTCCAGGTATCACTCATAGGATCTGGGAGATCTGGCTTAGA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGAGACTCCAGGTATCACTCATAGGATCTGGGAGATCTGGCTTAGA  946

seq1  CACCTTCACAGGACACTCCATGGGGCAAAGGACAGTGAGCATGTGAGTCT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCACAGGACACTCCATGGGGCAAAGGACAGTGAGCATGTGAGTCT  996

seq1  GCCTCTCTAGGTCTCAGTTTCCCACCTGAGAGGACAAATGAATGAATATA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCTAGGTCTCAGTTTCCCACCTGAGAGGACAAATGAATGAATATA  1046

seq1  CACTGTCCTGGAATTC  1058
      ||||||||||||||||
seq2  CACTGTCCTGGAATTC  1062