BAC Information

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BAC

Clone NameB6Ng01-084F01
Chromosome8 (Build37)
Map Location 107,813,207 - 107,963,231
singlet/doubletdoublet
Overlap geneExoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36
Upstream geneCmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik
Downstream gene2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084F01.bB6Ng01-084F01.g
ACCDH898309DH898310
length526849
definitionDH898309|Mus musculus domesticus DNA, BAC clone: B6Ng01-084F01, 5' end.DH898310|Mus musculus domesticus DNA, BAC clone: B6Ng01-084F01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,962,700 - 107,963,231)(107,813,207 - 107,814,048)
sequence
caaataaaaaattaaaagcagaaataactggaggggggcctggagtgatg
gttcagggttaattgcacttgctattcctgaagaggacctgaggggggac
ggggcggcaggggggggggctggagtggagtgaagatggttcagagttaa
ttgcactttgctgttcctgaaggggacctgagctcagtctctggaacccc
catgaaggctcagagccaccggttacttcagtaccaggggatctgagtcc
ctcttctggcctgtgtgagtactgcatgcctgtgatctacatacatgcag
gctaaagtcatacacagaaagttaaaataaaaagccgggcggtggtggtg
cacatctttaatcccagcactcaggaggcagtggcaggtggatatctgta
agttcaacaagactggtctacagagtgagttccaggacagccagggctgt
acagaggaaccctgtctcaaaaaacaaacaaatcttaaaaaataagaagt
tacttgtgttctactagtccctaaaa
gaattccctggtaaatcaagaagggtgaagtcttagtcatatttagtctc
ggtttttggagtggggtaggggttcggtccgcgtgccgcgcccccacctg
atcacgcctcttttgctgcccgcagttcctgctcctcaaagccgatcgct
ggccgccgagaccatggaagcccgcgccaaagacacgcgcactcgggcgc
gcgcacgctcacacgaagacgcaagggccacgtccgtctccgccgtaggg
ggcgtgcttaagctcgctgtgggcggagccaaacgtgcgaagaggggcgg
gattcgctgccaccctgcgcccctggaccgcgtctggtcctagacttccc
cctcttcaaacttccgcgcttctaaagcgactggcgagggcgatgaaacc
atttactgcttgccggtagtagatacataggaagtgagtactccacggga
gcccagggttcggggcacgcagtccacaaagagagcagatgtctgcatag
gtgagatgctgccagaatactaggattcagccaggattatagatgtacca
ctgtgcacggacccctaattgcactgttgctttcaccggcgcgcccccaa
cacatagattcagacgtgtcgtagacgtggctttattacgcaaaacagat
gggtgtcaggagcagggacctgaagggaggcaggaggacaggggagggcg
taggcgtcggtaccaggcttgaagagcgcccggcggccagtggaacggtg
agggcggtggaccctcctgcagcgaaactgagtgctgcctgacgatgctc
tcgggacacgtctccgcgcaggtcctagagtggcagagaacttgatcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_107962700_107963231
seq2: B6Ng01-084F01.b_41_572 (reverse)

seq1  TTTTAGGGACTAGTAGAACACAAGTAACTTCTTATTTTTTAAGATTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGGACTAGTAGAACACAAGTAACTTCTTATTTTTTAAGATTTGTT  50

seq1  TGTTTTTTGAGACAGGGTTCCTCTGTACAGCCCTGGCTGTCCTGGAACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTGAGACAGGGTTCCTCTGTACAGCCCTGGCTGTCCTGGAACTC  100

seq1  ACTCTGTAGACCAGTCTTGTTGAACTTACAGATATCCACCTGCCACTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTAGACCAGTCTTGTTGAACTTACAGATATCCACCTGCCACTGCC  150

seq1  TCCTGAGTGCTGGGATTAAAGATGTGCACCACCACCGCCCGGCTTTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTGCTGGGATTAAAGATGTGCACCACCACCGCCCGGCTTTTTAT  200

seq1  TTTAACTTTCTGTGTATGACTTTAGCCTGCATGTATGTAGATCACAGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTTTCTGTGTATGACTTTAGCCTGCATGTATGTAGATCACAGGCA  250

seq1  TGCAGTACTCACACAGGCCAGAAGAGGGACTCAGATCCCCTGGTACTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTACTCACACAGGCCAGAAGAGGGACTCAGATCCCCTGGTACTGAA  300

seq1  GTAACCGGTGGCTCTGAGCCTTCATGGGGGTTCCAGAGACTGAGCTCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCGGTGGCTCTGAGCCTTCATGGGGGTTCCAGAGACTGAGCTCAGG  350

seq1  TCCCCTTCAGGAACAGCAAAGTGCAATTAACTCTGAACCATCTTCACTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTCAGGAACAGCAAAGTGCAATTAACTCTGAACCATCTTCACTCC  400

seq1  ACTCCAGCCCCCCCCCCTGCCGCCCCGTCCCCCCTCAGGTCCTCTTCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGCCCCCCCCCCTGCCGCCCCGTCCCCCCTCAGGTCCTCTTCAGG  450

seq1  AATAGCAAGTGCAATTAACCCTGAACCATCACTCCAGGCCCCCCTCCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAAGTGCAATTAACCCTGAACCATCACTCCAGGCCCCCCTCCAGT  500

seq1  TATTTCTGCTTTTAATTTTTTATTTGGAATTC  532
      ||||||||||||||||||||||||||||||||
seq2  TATTTCTGCTTTTAATTTTTTATTTGGAATTC  532

seq1: chr8_107813207_107814048
seq2: B6Ng01-084F01.g_69_917

seq1  GAATTCCCTGGTAAATCAAGAAGGGTGAAGTCTTAGTCATATTTAGTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGGTAAATCAAGAAGGGTGAAGTCTTAGTCATATTTAGTCTC  50

seq1  GGTTTTTGGAGTGGGGTAGGGGTTCGGTCCGCGTGCCGCGCCCCCACCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTGGAGTGGGGTAGGGGTTCGGTCCGCGTGCCGCGCCCCCACCTG  100

seq1  ATCACGCCTCTTTTGCTGCCCGCAGTTCCTGCTCCTCAAAGCCGATCGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACGCCTCTTTTGCTGCCCGCAGTTCCTGCTCCTCAAAGCCGATCGCT  150

seq1  GGCCGCCGAGACCATGGAAGCCCGCGCCAAAGACACGCGCACTCGGGCGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGCCGAGACCATGGAAGCCCGCGCCAAAGACACGCGCACTCGGGCGC  200

seq1  GCGCACGCTCACACGAAGACGCAAGGGCCACGTCCGTCTCCGCCGTAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCACGCTCACACGAAGACGCAAGGGCCACGTCCGTCTCCGCCGTAGGG  250

seq1  GGCGTGCTTAAGCTCGCTGTGGGCGGAGCCAAACGTGCGAAGAGGGGCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGCTTAAGCTCGCTGTGGGCGGAGCCAAACGTGCGAAGAGGGGCGG  300

seq1  GATTCGCTGCCACCCTGCGCCCCTGGACCGCGTCTGGTCCTAGACTTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCGCTGCCACCCTGCGCCCCTGGACCGCGTCTGGTCCTAGACTTCCC  350

seq1  CCTCTTCAAACTTCCGCGCTTCTAAAGCGACTGGCGAGGGCGATGAAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCAAACTTCCGCGCTTCTAAAGCGACTGGCGAGGGCGATGAAACC  400

seq1  ATTTACTGCTTGCCGGTAGTAGATACATAGGAAGTGAGTACTCCACGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTGCTTGCCGGTAGTAGATACATAGGAAGTGAGTACTCCACGGGA  450

seq1  GCCCAGGGTTCGGGGCACGCAGTCCACAAAGAGAGCAGATGTCTGCATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGGTTCGGGGCACGCAGTCCACAAAGAGAGCAGATGTCTGCATAG  500

seq1  GTGAGATGCTGCCAGAATACTAGGATTCAGCCAGGATTATAGATGTACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATGCTGCCAGAATACTAGGATTCAGCCAGGATTATAGATGTACCA  550

seq1  CTGTGCACGGACCCCTAATTGCACTGTTGCTTTCACCGGCGCGCCCCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCACGGACCCCTAATTGCACTGTTGCTTTCACCGGCGCGCCCCCAA  600

seq1  CACATAGATTCAGACGTGTCGTAGACGTGGCTTTATTACGC-AAACAGAT  649
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CACATAGATTCAGACGTGTCGTAGACGTGGCTTTATTACGCAAAACAGAT  650

seq1  GGGTGTCAGGAGCAGGGACCTGAAGGGAGGCAGGAGGACA-GGGAGGGCG  698
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGGTGTCAGGAGCAGGGACCTGAAGGGAGGCAGGAGGACAGGGGAGGGCG  700

seq1  TAGGCGTCGGTACCAGGC-TGAAGAGCGCCCGGCGGCCAGTGG-ACGGTG  746
      |||||||||||||||||| |||||||||||||||||||||||| ||||||
seq2  TAGGCGTCGGTACCAGGCTTGAAGAGCGCCCGGCGGCCAGTGGAACGGTG  750

seq1  AGGGCGGTGGACCCGCCTGCAGCG-AACTGAGTGCTGCCTGACGATGCTC  795
      |||||||||||||| ||||||||| |||||||||||||||||||||||||
seq2  AGGGCGGTGGACCCTCCTGCAGCGAAACTGAGTGCTGCCTGACGATGCTC  800

seq1  TCGGGACACGTCTCCGCGCAGGTCCAAGAG-GGCAGAG-ACGTGATCCT  842
      ||||||||||||||||||||||||| |||| ||||||| || |||||||
seq2  TCGGGACACGTCTCCGCGCAGGTCCTAGAGTGGCAGAGAACTTGATCCT  849