BAC Information

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BAC

Clone NameB6Ng01-085E20
Chromosome8 (Build37)
Map Location 114,187,704 - 114,349,429
singlet/doubletdoublet
Overlap geneZfp1, Ctrb1, Bcar1, Cfdp1
Upstream geneVac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59, Znrf1, Ldhd
Downstream geneTmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040, Cntnap4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085E20.bB6Ng01-085E20.g
ACCDH899014DH899015
length1,107244
definitionDH899014|Mus musculus domesticus DNA, BAC clone: B6Ng01-085E20, 5' end.DH899015|Mus musculus domesticus DNA, BAC clone: B6Ng01-085E20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,348,309 - 114,349,429)(114,187,704 - 114,187,947)
sequence
gaattcacccagcttaagggtgggaatccgtttgtgaagagagcactgtg
atcatctagagaggactaaagtctgctggttagtgacagcagtgagcgct
gagcatgcactagagggcagaagtcaccctgggaaagcaagcactcaggc
acaccaagccgttctaagactggacggtgctatttatttttgtctgccta
attagtctttgataagagatttctttgttttgttttctttaatatatcta
gatatattaaattacagtttggtttattttcagctctgctttggaaaatt
atttttccctctcatttctgtaacacacagttttatttgtggagattttt
tgttaattacagatagacatgctaacatggcacagccgtgaaggtgcttg
ttgtcaagcctcatgagagaagtgtccctcacgagtcgtccagtggcctc
cacacacagagtgtggtactcatgatcgtctccctctgccccaacagaaa
aaaataaatataaaaaaattaaagagagaaattgtgcgccgcctcaggga
ctgcgttattaatactgatcctttgcaaatactctgctgctcatccccgc
gtgtttgtgtggaagttgctgtactcatctgttctaatgtcagggaagca
caccgttcacttggagcagacagtctgtgtctatgttctcaccaaagttc
tggtcaaagaatcttggtactatttttgtggatggttatgagcatatagc
aagactcacatttattaaatttgtaatttcttgtggatttttcttacagg
agagctgagcagttgttgttctaattattttggttgaggatgaaaacgag
gctgacctgcatccgttattccagttacatggtccggggctcttgccaaa
ccccactactcaagcaaagctattgtaatgcagatgaaacaattaaaaaa
atgtttttaatggttttatataatgctcagctgcatatacactggaggca
gagatggcatcagatcccttatagtggtgtgagccaccatatggttgctg
ggaatgaactctgactctcgaagagcaaccactgcctcttacctgtggag
ccatctc
tctactctcatagaccaggctggctgcgaactcaagatcctcctacctct
gcctctcttgtgctgggattaaagatgtgcaccaccacctggctgggttt
gttttgtttagtagtattgtggaggtgagggggagagaatcctgctgttt
atctggtgttgacttggaaactgtgtagttggggcttgccttgaaatcat
ggtactacctcttcttctcaagttctgggattatatgtgtgcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_114348309_114349429
seq2: B6Ng01-085E20.b_45_1151 (reverse)

seq1  GAGATGGCT-CACAGGTTAAGA-GCAGTGGCTGCTCTTCCAGAAGTCATG  48
      ||||||||| |||||| ||||| ||||||| |||||||| || ||||| |
seq2  GAGATGGCTCCACAGG-TAAGAGGCAGTGGTTGCTCTTCGAG-AGTCA-G  47

seq1  AGTTCAATTCCCAGCAACCATATGGTGGCTCACAACCATCTATAAGGGAG  98
      ||||| ||||||||||||||||||||||||||| |||| |||||||||| 
seq2  AGTTC-ATTCCCAGCAACCATATGGTGGCTCAC-ACCA-CTATAAGGGA-  93

seq1  TCTGATGCCCTCTTCTGGCCTCCAGGTGTATATGCAGCTGAGCATTCATA  148
      ||||||||| || ||| ||||||| ||||||||||||||||||||| |||
seq2  TCTGATGCCATC-TCT-GCCTCCA-GTGTATATGCAGCTGAGCATT-ATA  139

seq1  TTAAATACATTTAAAAACATTTTTTTTAATTGTTTCATCTTGCATTTACA  198
      |  || ||  ||||||||| ||||||||||||||||||| |||| |||||
seq2  T--AAAACCATTAAAAACA-TTTTTTTAATTGTTTCATC-TGCA-TTACA  184

seq1  ATAGCTTTGCTTGAGTAGTGGGGTTTTGGCAAGAGCCCCGGACCATGTAA  248
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATAGCTTTGCTTGAGTAGTGGGG-TTTGGCAAGAGCCCCGGACCATGTAA  233

seq1  CTGGATATAACGAATGCAGGTCAGCCTCGTTTTCATCCTCAACCAAAATA  298
      ||||| |||||| |||||||||||||||||||||||||||||||||||||
seq2  CTGGA-ATAACGGATGCAGGTCAGCCTCGTTTTCATCCTCAACCAAAATA  282

seq1  ATTAGAAC-ACAACTGCTCAGCCTCTCCTGTAAGAAAAATCCACAAGAAA  347
      |||||||| |||||||||||| ||||||||||||||||||||||||||||
seq2  ATTAGAACAACAACTGCTCAG-CTCTCCTGTAAGAAAAATCCACAAGAAA  331

seq1  TTACAAATTTAATAAATGTGAGTCTTGCTATATGCTCATAACCATCCAC-  396
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTACAAATTTAATAAATGTGAGTCTTGCTATATGCTCATAACCATCCACA  381

seq1  AAAATAGTACCAAGATTCTTTGACCAGAACTTTGGTGAGAACATAGACAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGTACCAAGATTCTTTGACCAGAACTTTGGTGAGAACATAGACAC  431

seq1  AGACTGTCTGCTCCAAGTGAACGGTGTGCTTCCCTGACATTAGAACAGAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTCTGCTCCAAGTGAACGGTGTGCTTCCCTGACATTAGAACAGAT  481

seq1  GAGTACAGCAACTTCCACACAAACACGCGGGGATGAGCAGCAGAGTATTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACAGCAACTTCCACACAAACACGCGGGGATGAGCAGCAGAGTATTT  531

seq1  GCAAAGGATCAGTATTAATAACGCAGTCCCTGAGGCGGCGCACAATTTCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGATCAGTATTAATAACGCAGTCCCTGAGGCGGCGCACAATTTCT  581

seq1  CTCTTTAATTTTTTTATATTTATTTTTTTCTGTTGGGGCAGAGGGAGACG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTAATTTTTTTATATTTATTTTTTTCTGTTGGGGCAGAGGGAGACG  631

seq1  ATCATGAGTACCACACTCTGTGTGTGGAGGCCACTGGACGACTCGTGAGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGAGTACCACACTCTGTGTGTGGAGGCCACTGGACGACTCGTGAGG  681

seq1  GACACTTCTCTCATGAGGCTTGACAACAAGCACCTTCACGGCTGTGCCAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTCTCTCATGAGGCTTGACAACAAGCACCTTCACGGCTGTGCCAT  731

seq1  GTTAGCATGTCTATCTGTAATTAACAAAAAATCTCCACAAATAAAACTGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCATGTCTATCTGTAATTAACAAAAAATCTCCACAAATAAAACTGT  781

seq1  GTGTTACAGAAATGAGAGGGAAAAATAATTTTCCAAAGCAGAGCTGAAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTACAGAAATGAGAGGGAAAAATAATTTTCCAAAGCAGAGCTGAAAA  831

seq1  TAAACCAAACTGTAATTTAATATATCTAGATATATTAAAGAAAACAAAAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCAAACTGTAATTTAATATATCTAGATATATTAAAGAAAACAAAAC  881

seq1  AAAGAAATCTCTTATCAAAGACTAATTAGGCAGACAAAAATAAATAGCAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATCTCTTATCAAAGACTAATTAGGCAGACAAAAATAAATAGCAC  931

seq1  CGTCCAGTCTTAGAACGGCTTGGTGTGCCTGAGTGCTTGCTTTCCCAGGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCAGTCTTAGAACGGCTTGGTGTGCCTGAGTGCTTGCTTTCCCAGGG  981

seq1  TGACTTCTGCCCTCTAGTGCATGCTCAGCGCTCACTGCTGTCACTAACCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCTGCCCTCTAGTGCATGCTCAGCGCTCACTGCTGTCACTAACCA  1031

seq1  GCAGACTTTAGTCCTCTCTAGATGATCACAGTGCTCTCTTCACAAAC-CA  1095
      |||||||||||||||||||||||||||||||||||||||||||||||  |
seq2  GCAGACTTTAGTCCTCTCTAGATGATCACAGTGCTCTCTTCACAAACGGA  1081

seq1  TTCCCACCCTTAAGCTGGGTGAATTC  1121
      ||||||||||||||||||||||||||
seq2  TTCCCACCCTTAAGCTGGGTGAATTC  1107

seq1: chr8_114187704_114187947
seq2: B6Ng01-085E20.g_73_316

seq1  TCTACTCTCATAGACCAGGCTGGCTGCGAACTCAAGATCCTCCTACCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTCTCATAGACCAGGCTGGCTGCGAACTCAAGATCCTCCTACCTCT  50

seq1  GCCTCTCTTGTGCTGGGATTAAAGATGTGCACCACCACCTGGCTGGGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCTTGTGCTGGGATTAAAGATGTGCACCACCACCTGGCTGGGTTT  100

seq1  GTTTTGTTTAGTAGTATTGTGGAGGTGAGGGGGAGAGAATCCTGCTGTAT  150
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTTTTGTTTAGTAGTATTGTGGAGGTGAGGGGGAGAGAATCCTGCTGTTT  150

seq1  AGCTGGTGTTGACATGGAAACTGTGTAGTTGGGGCTTGCCTTGAAATCAT  200
      | ||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATCTGGTGTTGACTTGGAAACTGTGTAGTTGGGGCTTGCCTTGAAATCAT  200

seq1  GGTACTACCTCAGCTTCTCAAGTTCTGGGATTATAGGTGTGCAC  244
      |||||||||||  |||||||||||||||||||||| ||||||||
seq2  GGTACTACCTCTTCTTCTCAAGTTCTGGGATTATATGTGTGCAC  244