BAC Information

Click to search

BAC

Clone NameB6Ng01-085L22
Chromosome8 (Build37)
Map Location 131,045,498 - 131,161,049
singlet/doubletdoublet
Overlap geneLOC668494
Upstream genePard3, EG628847, Nrp1
Downstream geneItgb1, LOC100042659, LOC100042667, Ccdc7, 1700008F21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085L22.bB6Ng01-085L22.g
ACCDH899329DH899330
length1,1801,167
definitionDH899329|Mus musculus domesticus DNA, BAC clone: B6Ng01-085L22, 5' end.DH899330|Mus musculus domesticus DNA, BAC clone: B6Ng01-085L22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,159,867 - 131,161,049)(131,045,498 - 131,046,674)
sequence
gaattctctgcgatccagagtctacacacaggagctaaagctcaaggtcc
aggctgtttaacatgaatagcaggcactccatttatccctgtatcaggca
aggaaacctggggagcgcgcgcgcacacacacacacacacacacacacac
acacacacacacacacacacaggcaaagtcatctaatgttaaaatgtatc
gttaatttattttccagtgtcttggatggaatataactaggtgatatatg
tcaaatgaatttcatggctacagtccaaatgtaacaaatgaatcatttaa
gtctatatgagattggtgatgccaaatttttcattctcttccattttgta
aatgcatcacatcttagctcaaaaatcaatctattaaccttctaaacact
cggaactggaatgaaggttcaaggtgagccttgtgacctcccatgtgaca
ttagtcatattaagcaattatcattggcttgaagtaatgggtggctggct
gaagggaacagcacacggttctcaccaatcaacaaaatgtcagaaactct
ggagagatgaagagtatgcaaaatcagggtttgaaacctcgagtctgccc
caaagctcctgccttattaaaataaatttgaacgttttggcagctatgct
gatagactgcacataaaatcctcttgtaaaatctttgtgttatgagataa
ggaattctgcttaatggagttgaagggcaactgaagagttcagaaccaac
ctgtttgccctctaaacctccaagctggaccagtctgatgggtttcccgg
gtgctggaatagttttctctaaccacactgaggattactgagagtagagc
tttgcagacatgtttaaaattgaagtccaaataaatgtctcaactaaaat
tgctgtaggaataatacatagattattatcctctgcatttaatttatatt
gcattgtatcgattttacagaatacaaaacttaatgtagataattttgga
ttcatgacaggagggagagttaataggtttgcccagaagagacaaatgaa
gtggatctctaggaattcttcagccacattctctgcacattccacctccc
tgcagcatgaagaatatacttgccacaaacgaattcttgtcactggtgcc
acctttgcagctaactgctaactcatggga
gaattcactaacgccaacctctgaaggctgactgtgtctcttctgagggc
tgattatgtgaagccatgctcagaacttaagccaaccaagactggagatt
ttactccacagatattaagacccccagaaatcaggtttttactgttgcct
ctttccagagcctagttgtacaaaatgtaccagtgtaaccaccaaaaggg
tgagaactcttctttgccgtctttgacccgaaaaattagatttgtcagct
tgtttacataaaggatattggaagccacaggcagtgcagggtatctcact
aagagtcaggatcaaagtgtgggagtttggaagagagcagaaggatgttt
aagagagggcagggaactggggaaagtgttcaatgtgtaaagcgcttgct
ttgcaaacataaagacttgagttagatcccagaacctgtgtataaagctg
agtatggtggcactcacttgtaatactagaacctgggaggtgtcactggg
gattgccagccagccaacgtaacctaataagtgaactccacattcagagt
tacacacacacgcacacacacacacacacacacacacacacacacacaca
caaccaaggaagaggaacaatctatgtttagacactggcgcagagcagag
gcaacttggaaactgacccagagtaagcattacgcagtggaagaagagaa
aagtgggctgcagggagtcattgaaaaggaagttttcattaggaaagcaa
gcaatagccactcagaaggacagaggcagccatcattttgaagctatggg
gtgacactagaaggcagaatgttttatgggtcttggccatgtaccatcag
aagccttttttaatttccaggagtatcacagcctgattaccagcaggtag
attctaagggggacttgagtcctgtttcctttgggaactgcaaggtgaag
cctacctggtgaaagccttgcacaatccctcatcacctgtttggaagctg
aaggccttcttcccatgacaagtgaccaggaaggctcaggtctcaggcag
catggtcacatcatttctacggagcaaatcaacaacttaggtgttcatag
gtgttggatctgaggagggccattcctctcttgtcaatgacagcgttttc
tgactcatcagtcagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_131159867_131161049
seq2: B6Ng01-085L22.b_48_1227 (reverse)

seq1  TCCCATGAAGTTAGGCAGTTTAGCTGCAAGGATGGCA-CAGTGACAAGAA  49
      ||||||| ||||| |||| |||||||||| | ||||| |||||||||| |
seq2  TCCCATG-AGTTA-GCAG-TTAGCTGCAAAGGTGGCACCAGTGACAAG-A  46

seq1  ATTCTGTTTGTGGC-AGT-TAATCTTCATGCTGCAGGGAGGTGGAATGTG  97
      |||| ||||||||| ||| || ||||||||||||||||||||||||||||
seq2  ATTC-GTTTGTGGCAAGTATATTCTTCATGCTGCAGGGAGGTGGAATGTG  95

seq1  CAGAGAATGTGGCTGAAGAA-TCCTAGAGATCCACTTTCATATGTCTCAT  146
      |||||||||||||||||||| |||||||||||||| ||||| |||||| |
seq2  CAGAGAATGTGGCTGAAGAATTCCTAGAGATCCAC-TTCATTTGTCTCTT  144

seq1  CTGAGCAAA-CTATTAACTCTCCCTCCTTGTCATGAATCCAAAATTATCT  195
      ||| ||||| ||||||||||||||||| ||||||||||||||||||||||
seq2  CTGGGCAAACCTATTAACTCTCCCTCC-TGTCATGAATCCAAAATTATCT  193

seq1  ACATTAAGTTTTGTATTCTGTTAAAATCGATACAATGCAATATAAATTAA  245
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACATTAAGTTTTGTATTCTG-TAAAATCGATACAATGCAATATAAATTAA  242

seq1  ATGCAGAGGATAATAATCTATGTATTATTCCTACAGCAATTTTAGTTGAG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAGGATAATAATCTATGTATTATTCCTACAGCAATTTTAGTTGAG  292

seq1  ACATTTATTTGGACTTCAATTTTAAACATGTCTGCAAAGCTCTACTCTCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTATTTGGACTTCAATTTTAAACATGTCTGCAAAGCTCTACTCTCA  342

seq1  GTAATCCTCAGTGTGGTTAGAGAAAACTATTCCAGCACCCGGGAAACCCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCCTCAGTGTGGTTAGAGAAAACTATTCCAGCACCCGGGAAACCCA  392

seq1  TCAGACTGGTCCAGCTTGGAGGTTTAGAGGGCAAACAGGTTGGTTCTGAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTGGTCCAGCTTGGAGGTTTAGAGGGCAAACAGGTTGGTTCTGAA  442

seq1  CTCTTCAGTTGCCCTTCAACTCCATTAAGCAGAATTCCTTATCTCATAAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAGTTGCCCTTCAACTCCATTAAGCAGAATTCCTTATCTCATAAC  492

seq1  ACAAAGATTTTACAAGAGGATTTTATGTGCAGTCTATCAGCATAGCTGCC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGATTTTACAAGAGGATTTTATGTGCAGTCTATCAGCATAGCTGCC  542

seq1  AAAACGTTCAAATTTATTTTAATAAGGCAGGAGCTTTGGGGCAGACTCGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGTTCAAATTTATTTTAATAAGGCAGGAGCTTTGGGGCAGACTCGA  592

seq1  GGTTTCAAACCCTGATTTTGCATACTCTTCATCTCTCCAGAGTTTCTGAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCAAACCCTGATTTTGCATACTCTTCATCTCTCCAGAGTTTCTGAC  642

seq1  ATTTTGTTGATTGGTGAGAACCGTGTGCTGTTCCCTTCAGCCAGCCACCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTGATTGGTGAGAACCGTGTGCTGTTCCCTTCAGCCAGCCACCC  692

seq1  ATTACTTCAAGCCAATGATAATTGCTTAATATGACTAATGTCACATGGGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTCAAGCCAATGATAATTGCTTAATATGACTAATGTCACATGGGA  742

seq1  GGTCACAAGGCTCACCTTGAACCTTCATTCCAGTTCCGAGTGTTTAGAAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACAAGGCTCACCTTGAACCTTCATTCCAGTTCCGAGTGTTTAGAAG  792

seq1  GTTAATAGATTGATTTTTGAGCTAAGATGTGATGCATTTACAAAATGGAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATAGATTGATTTTTGAGCTAAGATGTGATGCATTTACAAAATGGAA  842

seq1  GAGAATGAAAAATTTGGCATCACCAATCTCATATAGACTTAAATGATTCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGAAAAATTTGGCATCACCAATCTCATATAGACTTAAATGATTCA  892

seq1  TTTGTTACATTTGGACTGTAGCCATGAAATTCATTTGACATATATCACCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTACATTTGGACTGTAGCCATGAAATTCATTTGACATATATCACCT  942

seq1  AGTTATATTCCATCCAAGACACTGGAAAATAAATTAACGATACATTTTAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATATTCCATCCAAGACACTGGAAAATAAATTAACGATACATTTTAA  992

seq1  CATTAGATGACTTTGCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGATGACTTTGCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  1042

seq1  GTGTGTGTGTGTGTGCGCGCGCGCTCCCCAGGTTTCCTTGCCTGATACAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGCGCGCGCGCTCCCCAGGTTTCCTTGCCTGATACAG  1092

seq1  GGATAAATGGAGTGCCTGCTATTCATGTTAAACAGCCTGGACCTTGAGCT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAATGGAGTGCCTGCTATTCATGTTAAACAGCCTGGACCTTGAGCT  1142

seq1  TTAGCTCCTGTGTGTAGACTCTGGATCGCAGAGAATTC  1183
      ||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTCCTGTGTGTAGACTCTGGATCGCAGAGAATTC  1180

seq1: chr8_131045498_131046674
seq2: B6Ng01-085L22.g_69_1235

seq1  GAATTCACTAACGCCAACCTCTGAAGGCTGACTGTGTCTCTTCTGAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAACGCCAACCTCTGAAGGCTGACTGTGTCTCTTCTGAGGGC  50

seq1  TGATTATGTGAAGCCATGCTCAGAACTTAAGCCAACCAAGACTGGAGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATGTGAAGCCATGCTCAGAACTTAAGCCAACCAAGACTGGAGATT  100

seq1  TTACTCCACAGATATTAAGACCCCCAGAAATCAGGTTTTTACTGTTGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCCACAGATATTAAGACCCCCAGAAATCAGGTTTTTACTGTTGCCT  150

seq1  CTTTCCAGAGCCTAGTTGTACAAAATGTACCAGTGTAACCACCAAAAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAGAGCCTAGTTGTACAAAATGTACCAGTGTAACCACCAAAAGGG  200

seq1  TGAGAACTCTTCTTTGCCGTCTTTGACCCGAAAAATTAGATTTGTCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACTCTTCTTTGCCGTCTTTGACCCGAAAAATTAGATTTGTCAGCT  250

seq1  TGTTTACATAAAGGATATTGGAAGCCACAGGCAGTGCAGGGTATCTCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACATAAAGGATATTGGAAGCCACAGGCAGTGCAGGGTATCTCACT  300

seq1  AAGAGTCAGGATCAAAGTGTGGGAGTTTGGAAGAGAGCAGAAGGATGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTCAGGATCAAAGTGTGGGAGTTTGGAAGAGAGCAGAAGGATGTTT  350

seq1  AAGAGAGGGCAGGGAACTGGGGAAAGTGTTCAATGTGTAAAGCGCTTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGGGCAGGGAACTGGGGAAAGTGTTCAATGTGTAAAGCGCTTGCT  400

seq1  TTGCAAACATAAAGACTTGAGTTAGATCCCAGAACCTGTGTATAAAGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAACATAAAGACTTGAGTTAGATCCCAGAACCTGTGTATAAAGCTG  450

seq1  AGTATGGTGGCACTCACTTGTAATACTAGAACCTGGGAGGTGTCACTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGGTGGCACTCACTTGTAATACTAGAACCTGGGAGGTGTCACTGGG  500

seq1  GATTGCCAGCCAGCCAACGTAACCTAATAAGTGAACTCCACATTCAGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCCAGCCAGCCAACGTAACCTAATAAGTGAACTCCACATTCAGAGT  550

seq1  TACACACACACGCACACACACACACACACACACACACACACACACACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACACGCACACACACACACACACACACACACACACACACACACA  600

seq1  CAACCAAGGAAGAGGAACAATCTATG-TTAGACACTGGCGCAGAGCAGAG  649
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAACCAAGGAAGAGGAACAATCTATGTTTAGACACTGGCGCAGAGCAGAG  650

seq1  GCAACTTGGAAACTGACCCAGAGTAAGCATTACGCAGTGGAAGAAGAGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTTGGAAACTGACCCAGAGTAAGCATTACGCAGTGGAAGAAGAGAA  700

seq1  AAGTGGGCTGCAGGGAGTCATTGAAAAGGAAGTTTTCATTAGGAAAGCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGGCTGCAGGGAGTCATTGAAAAGGAAGTTTTCATTAGGAAAGCAA  750

seq1  GCAATAGCCACTCAGAAGGACAGAGGCAGCCATCATTTTGAAGCTATGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAGCCACTCAGAAGGACAGAGGCAGCCATCATTTTGAAGCTATGGG  800

seq1  GTGACACTAGAAGGCAGAATG-TTTATGGGTCTTGGCCATGTACCATCAG  848
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTGACACTAGAAGGCAGAATGTTTTATGGGTCTTGGCCATGTACCATCAG  850

seq1  AAGCC-TTTTTAATTTCCAGGAGTATCACAGCCTGATTACCAGCAGGTAG  897
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTTTTTAATTTCCAGGAGTATCACAGCCTGATTACCAGCAGGTAG  900

seq1  A-TCTAAGGAGGGACTTGGAGTCCTGTTTCC-TTGGAAACTGCAAAGTGA  945
      | ||||||| ||||||| ||||||||||||| |||| |||||||| ||||
seq2  ATTCTAAGG-GGGACTT-GAGTCCTGTTTCCTTTGGGAACTGCAAGGTGA  948

seq1  AGCC-AACTGTGAAAAGCCTTGCACAAATCCCTCATCACCTGTTTTGGAA  994
      |||| | |||   |||||||||||| |||||||||||||||| |||||||
seq2  AGCCTACCTGGTGAAAGCCTTGCAC-AATCCCTCATCACCTG-TTTGGAA  996

seq1  GCTGAA-GCCTCTTCCCCATGACAAAGTGACCCAGGAGGCTCAGGTCCTC  1043
      |||||| ||||  | |||||||| ||||||||  | |||||||||| |||
seq2  GCTGAAGGCCTTCTTCCCATGAC-AAGTGACCAGGAAGGCTCAGGT-CTC  1044

seq1  AGGCAAGCATGG-CACATCCATTTCTACCGAAGCAAATCAAACAACCTTA  1092
      |||| ||||||| ||||| |||||||| || |||||||| ||||| ||||
seq2  AGGC-AGCATGGTCACAT-CATTTCTA-CGGAGCAAATC-AACAA-CTTA  1089

seq1  GTGTTTCATA-GTGTTGGATCTGAGGAGGCACATT-CTCTCTTGTCAATG  1140
      |   |||||| ||||||||||||||||||  |||| ||||||||||||||
seq2  GGTGTTCATAGGTGTTGGATCTGAGGAGGGCCATTCCTCTCTTGTCAATG  1139

seq1  AACAAAGGCTGTTTTTCTGGACTCACATCAGTCAGTT  1177
       |||  |     |||||| ||||  ||||||||||||
seq2  -ACAGCG-----TTTTCT-GACT--CATCAGTCAGTT  1167