BAC Information

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BAC

Clone NameB6Ng01-085O03
Chromosome8 (Build37)
Map Location 131,381,150 - 131,382,299
singlet/doubletsinglet
Overlap geneLOC100042659
Upstream geneNrp1, LOC668494, Itgb1
Downstream geneLOC100042667, Ccdc7, 1700008F21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085O03.bB6Ng01-085O03.g
ACCDH899432DH899433
length1,1381,172
definitionDH899432|Mus musculus domesticus DNA, BAC clone: B6Ng01-085O03, 5' end.DH899433|Mus musculus domesticus DNA, BAC clone: B6Ng01-085O03, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaacactgtatactgaccttcttgtgtacttaatatccatgcaga
aaaacatactaatatatattaaataaaaataaatattttttaaaaaagta
ttattttgtcatctggggtaatgcagtacaaacacccatgataacttgct
ccttcagaagtgcacagatatccttcaaactgttgtgatggaaaggcatg
tctaaaatatacgttggtgatgataactatatttagagtttgataaaagg
aaaggagatttagacagaaattgagcaaatagggaggacttgactctacc
actaagggagctctctagatcatcactgtgactaatgttctgcttacatg
atcatgcatgtggcacagtgatgaatggaaaatagttcatgtgaataata
ccactgtggtatgagaaacttgctcaagcaagcatgatccaatttaattt
caattcaattactggctctatttggtctactattggggagacacattatt
ccatgatggggaacatatggagttggagtgagtagtcagattgcacttgg
ctgtcagaaagcagagaaaaattaagaagagggaatagactaaaaatcat
taaagcctgctcaccatgagtcaccccattcagcaaagcttcacgttttt
ccaaacagcactaccagccagagactgagtgtttaaacacatatgtctgt
gggggggagggcattttactttcaaaccacaatagtcatagagattgaaa
atggatacaaagtgaccagctgcccctgcactatggctttctttccatat
tgtaccttcaaactgtgaaacaaaataatgcttttcttccttaagttgct
tttgtcatgcatgttgttacagcaacagaaaaaggtaagagtatagtaga
agtctcagaatgctttgggtcattccttgtattccttagtgacatttttt
ttttttggcttacttcatccgataaaatggccagtatgacacactttggg
tgtcctctcctaacatacatttacaacctgggccagatgaaagttttcca
ggaatttagtttttctataagtatatagtttatgaagtgccactctatag
aaaatgaagattcctctagccaattaggttaaaaactt
gaattctttgtatagctctgtattccattttttaatagggttatttggtt
ttctggaatctaacttcttgagttccttgtatatattgcatattagccct
ctattgagctttgggtttggtaaatatctttttccaatctgttggttgcc
tttttgccttattgacagtgccctttgccgtatacaagctttgcaattct
atgaggtcccattggtcaattcttgatcttaaggtacaagccataggtgt
tctattcaggaagttttcctctgtgcccatatttctcgtctgtttaagtg
cctctggttttatgtggtccttgatccacttagacttgaactttgtacaa
ggagataagaatggatcaatttacatttttctacatgctaactaccagtt
gagccaacaatatttgttgaaaatgctgtactttttccagtggatggttt
tagctcctttgtcaaagatcaagtgaccataggtgtgtgggttcatttct
gggtcttcaattctatttcattgatataactgtctgttaccctaccagta
ccatgaagtttttagttacaattgctgtgtagtactgcttgaagtcagag
atggtgtttccactagaggttcttttattgagaatagtttttgctatcct
aggttttttgttattccagacgaatttgcaaattgccctttctaactcag
tgaagaattgagttggaattttgttggggattgcattaaatctgtagatt
gctttccacaaatggtcatttttactatattaatcctgccaatccataag
catggggagatctttccacattctgagagcttctttaatttctttcttta
gagacttgaagttctaacatacagaccttttacttgcttagttagactca
caccaaggtcttattattatttgtgactattgtgaaggtgtgtttcccta
atttctttctcagcctgttatcctttgtgtagaagaaaggccacctggtt
cttggagttaattttatatcagcacttcacctgaggtggtatatcaggtt
aaggaggttctgtgtaatttttggggtcactagtatacatcatctccgca
aaaggataattttgattcctccttccaatggtaccttgagtccttggtgc
caatgtgcttggccagaaaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_131381150_131382299
seq2: B6Ng01-085O03.b_48_1185

seq1  GAATTCAACACTGTATACTGACCTTCTTGTGTACTTAATATCCATGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACACTGTATACTGACCTTCTTGTGTACTTAATATCCATGCAGA  50

seq1  AAAACATACTAATATATATTAAATAAAAATAAATATTTTTTAAAAAAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATACTAATATATATTAAATAAAAATAAATATTTTTTAAAAAAGTA  100

seq1  TTATTTTGTCATCTGGGGTAATGCAGTACAAACACCCATGATAACTTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGTCATCTGGGGTAATGCAGTACAAACACCCATGATAACTTGCT  150

seq1  CCTTCAGAAGTGCACAGATATCCTTCAAACTGTTGTGATGGAAAGGCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGAAGTGCACAGATATCCTTCAAACTGTTGTGATGGAAAGGCATG  200

seq1  TCTAAAATATACGTTGGTGATGATAACTATATTTAGAGTTTGATAAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAATATACGTTGGTGATGATAACTATATTTAGAGTTTGATAAAAGG  250

seq1  AAAGGAGATTTAGACAGAAATTGAGCAAATAGGGAGGACTTGACTCTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGATTTAGACAGAAATTGAGCAAATAGGGAGGACTTGACTCTACC  300

seq1  ACTAAGGGAGCTCTCTAGATCATCACTGTGACTAATGTTCTGCTTACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGGGAGCTCTCTAGATCATCACTGTGACTAATGTTCTGCTTACATG  350

seq1  ATCATGCATGTGGCACAGTGATGAATGGAAAATAGTTCATGTGAATAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGCATGTGGCACAGTGATGAATGGAAAATAGTTCATGTGAATAATA  400

seq1  CCACTGTGGTATGAGAAACTTGCTCAAGCAAGCATGATCCAATTTAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTGGTATGAGAAACTTGCTCAAGCAAGCATGATCCAATTTAATTT  450

seq1  CAATTCAATTACTGGCTCTATTTGGTCTACTATTGGGGAGACACATTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCAATTACTGGCTCTATTTGGTCTACTATTGGGGAGACACATTATT  500

seq1  CCATGATGGGGAACATATGGAGTTGGAGTGAGTAGTCAGATTGCACTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATGGGGAACATATGGAGTTGGAGTGAGTAGTCAGATTGCACTTGG  550

seq1  CTGTCAGAAAGCAGAGAAAAATTAAGAAGAGGGAATAGACTAAAAATCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGAAAGCAGAGAAAAATTAAGAAGAGGGAATAGACTAAAAATCAT  600

seq1  TAAAGCCTGCTCACCATGAGTCACCCCATTCAGCAAAGCTTCACGTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCCTGCTCACCATGAGTCACCCCATTCAGCAAAGCTTCACGTTTTT  650

seq1  CCAAACAGCACTACCAGCCAGAGACTGAGTGTTTAAACACATATGTCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACAGCACTACCAGCCAGAGACTGAGTGTTTAAACACATATGTCTGT  700

seq1  -GGGGGGAGGGCATTTTACTTTCAAACCACAATAGTCATAGAGATTGAAA  749
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGAGGGCATTTTACTTTCAAACCACAATAGTCATAGAGATTGAAA  750

seq1  ATGGATACAAAGTGACCAGCTGCCCCTGCACTATGGCTTTCTTTCCATAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATACAAAGTGACCAGCTGCCCCTGCACTATGGCTTTCTTTCCATAT  800

seq1  TGTACCTTCAAACTGTGAAACAAAATAATGCTTTTCTTCCTTAAGTTGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTTCAAACTGTGAAACAAAATAATGCTTTTCTTCCTTAAGTTGCT  850

seq1  TTTGTCAGGCATGTTGTTACAGCAACAGAAAAAGGTAAGGAGTATAGTAG  899
      ||||||| |||||||||||||||||||||||||||||| |||||||||||
seq2  TTTGTCATGCATGTTGTTACAGCAACAGAAAAAGGTAA-GAGTATAGTAG  899

seq1  AAGTCTCAGAAATGCTTTGGGTCATTCCTTGTATTCCTTAGTGACATTTT  949
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCAG-AATGCTTTGGGTCATTCCTTGTATTCCTTAGTGACATTTT  948

seq1  TTTTTTTTGGCTTACTTCATCCGATAAAATGGCCAGTATGACACACTTTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTGGCTTACTTCATCCGATAAAATGGCCAGTATGACACACTTTG  998

seq1  GGTGTCCTCTCCTAAACATACATTTACAAACCTGGGCAAGATGAAAGTTT  1049
      ||||||||||||| ||||||||||||| ||||||||| ||||||||||||
seq2  GGTGTCCTCTCCT-AACATACATTTAC-AACCTGGGCCAGATGAAAGTTT  1046

seq1  TCCAAGTATTTAAGTTTTTCATAAAGTA-ATAGTTTATGAAGTGCCACTA  1098
      |||| | |||| ||||||||   ||||| |||||||||||||||||||| 
seq2  TCCAGGAATTT-AGTTTTTCTATAAGTATATAGTTTATGAAGTGCCACT-  1094

seq1  CAAATAAGAAAAAGGAAGATCCCTCTAGCCAAATGTAAGTTTTAAAAAAC  1148
          ||   |||| |||||| |||||||||||   | || ||  ||||||
seq2  ---CTATAGAAAATGAAGATTCCTCTAGCCAA---TTAGGTT--AAAAAC  1136

seq1  TT  1150
      ||
seq2  TT  1138