BAC Information

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BAC

Clone NameB6Ng01-086E01
Chromosome8 (Build37)8 (Build37)
Map Location 70,473,256 - 70,474,33770,503,929 - 70,504,754
singlet/doubletsingletsinglet
Overlap genePsd3
Upstream geneLOC665453, Nat1, Nat2, LOC100041265, Nat3
Downstream geneSh2d4a, LOC665510, 4732435N03Rik, Ints10, Lpl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086E01.bB6Ng01-086E01.g
ACCDH899701DH899702
length1,0781,065
definitionDH899701|Mus musculus domesticus DNA, BAC clone: B6Ng01-086E01, 5' end.DH899702|Mus musculus domesticus DNA, BAC clone: B6Ng01-086E01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(70,473,256 - 70,474,337)(70,503,929 - 70,504,754)
sequence
gaattccaggctggtactctcagttttggtgggtcagtgagtctactact
aatctaagtatctgaggatgggtgggtggggttatcaatgggtcacaccc
actcatgccctatttaattcttcagtgttgctgtggtcccttatgtttgt
gtctgttgagcatgatagcagatagacacctttccagagataaccagagc
tgaaatagactttttccttagataactggataacctttgaagaagcaaac
ctaaccctaaattctaagatggatcatttttccatattaactacaaagcc
aacattttggggggaggaatgacacaaagaatgggatccttgtgaaacag
aatggaccactaaatgaccatgctcaaagtggcggccttctgcctgctag
aagttcagagtttccaaagatgaattcagagtctaagagcaccacgctat
ggataatcgcctcagacagcaacgtggctccaccagggaaagtcttcatg
tgccccaacacctccatgcagtgagtaccctcctcatttctgtcagcctt
actaataagatagaaaagcattttaagtttttccccaagattgtcctata
atggtttatatttgaaattaagcattttcaaacccaaggaattttctatg
actacatttgtacataatccagactgcctcagaccagggatcagacaaac
acactcaacccaaattcctgttacctctgtcagcaaacagcctgccccat
gaggctgtcaggaatacgaagagaactcccctgctccatctgctcagcaa
actttcatcgtccgtacgggctcttttaatgcacttctaacgctgcttct
gtgtgaatacacaccgctacacactgactggacagtgacattctctcaga
atgccactgtatccccttgggggctgcctgtggataagaacttgaaagaa
gtggaaagaagtcctgcccctcttccagccttcttctaaccagcagcttc
ccttcaacagacctacttcaaagttccagacccagtgaagtacaccatga
cctctaaacctcccacttaactgtttaa
gaattccagaagacatgggtgtgaagcctggacatctgcacgtgacacag
aacagagcattgaatctcgttttggcccagtgttcctgtctgtctcagca
ttttcccacttacttcaaatgtgattgccctgtgtgatcagatgccaggg
tgggcacacattaacctaaaatgcaaagattcactaagaagatgccaatg
tgtgcatggggtagggtaggggtgggaaaggaattgctcaacggttaagt
actgaccgcgcttccagaagacagagttaaactcccaacacccatgtggc
agctaacaagaatcagtaactctagtttccaatctgatactttttctgcc
ctctgagggcatagcacacacatggtactcagacaaacatatatgctcac
aagacatgaaataaaaagtacttttaaaaactattatcaatgaaaaggag
gtaatttacagagaaaagcagagagatggagaggagaggaaggctggacc
agtctgaaggatctctggttccttcgatgctcctgggaacactttcatgg
tctgtgaaaaggcacagcacagagtttctgtagatttcagacattccttt
atgcaaagcctccacgatcagtggtttcaagtcctaaaacaacaacccag
acaaagaaacaaaccaagaacagataactataaaattcctcaagtttaaa
attaaaacactaggttcaacaacaaagctttgtcctctgacctccatata
tgttcagtggtacatttacactttgctttgacacataacaaaacacacac
acacacacacacacacacacacacacacatacacaccacatttcaagctc
ctgacacacaaatacctccaaaaccaatgcccaccaccattaccccatcc
ttaataaactagaagtgaatatcaacatatttcaggatatatcataaatt
ttagtttctttatcattaactttccataaccaaaagtcaaatttattaaa
tggttttgccaaatagactttttttttcctattggaacttggacccaaaa
aatgagtataagatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_70473256_70474337
seq2: B6Ng01-086E01.b_45_1122

seq1  GAATTCCAGGCTGGTACTCTCAGTTTTGGTGGGTCAGTGAGTCTACTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCTGGTACTCTCAGTTTTGGTGGGTCAGTGAGTCTACTACT  50

seq1  AATCTAAGTATCTGAGGATGGGTGGGTGGGGTTATCAATGGGTCACACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAGTATCTGAGGATGGGTGGGTGGGGTTATCAATGGGTCACACCC  100

seq1  ACTCATGCCCTATTTAATTCTTCAGTGTTGCTGTGGTCCCTTATGTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGCCCTATTTAATTCTTCAGTGTTGCTGTGGTCCCTTATGTTTGT  150

seq1  GTCTGTTGAGCATGATAGCAGATAGACACCTTTCCAGAGATAACCAGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTGAGCATGATAGCAGATAGACACCTTTCCAGAGATAACCAGAGC  200

seq1  TGAAATAGACTTTTTCCTTAGATAACTGGATAACCTTTGAAGAAGCAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAGACTTTTTCCTTAGATAACTGGATAACCTTTGAAGAAGCAAAC  250

seq1  CTAACCCTAAATTCTAAGATGGATCATTTTTCCATATTAACTACAAAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCCTAAATTCTAAGATGGATCATTTTTCCATATTAACTACAAAGCC  300

seq1  AACATTTTGGGGGGAGGAATGACACAAAGAATGGGATCCTTGTGAAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTGGGGGGAGGAATGACACAAAGAATGGGATCCTTGTGAAACAG  350

seq1  AATGGACCACTAAATGACCATGCTCAAAGTGGCGGCCTTCTGCCTGCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACCACTAAATGACCATGCTCAAAGTGGCGGCCTTCTGCCTGCTAG  400

seq1  AAGTTCAGAGTTTCCAAAGATGAATTCAGAGTCTAAGAGCACCACGCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAGAGTTTCCAAAGATGAATTCAGAGTCTAAGAGCACCACGCTAT  450

seq1  GGATAATCGCCTCAGACAGCAACGTGGCTCCACCAGGGAAAGTCTTCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAATCGCCTCAGACAGCAACGTGGCTCCACCAGGGAAAGTCTTCATG  500

seq1  TGCCCCAACACCTCCATGCAGTGAGTACCCTCCTCATTTCTGTCAGCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCAACACCTCCATGCAGTGAGTACCCTCCTCATTTCTGTCAGCCTT  550

seq1  ACTAATAAGATAGAAAAGCATTTTAAGTTTTTCCCCAAGATTGTCCTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATAAGATAGAAAAGCATTTTAAGTTTTTCCCCAAGATTGTCCTATA  600

seq1  ATGGTTTATATTTGAAATTAAGCATTTTCAAACCCAAGGAATTTTCTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTATATTTGAAATTAAGCATTTTCAAACCCAAGGAATTTTCTATG  650

seq1  ACTACATTTGTACATAATCCAGACTGCCTCAGACCAGGGATCAGACAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACATTTGTACATAATCCAGACTGCCTCAGACCAGGGATCAGACAAAC  700

seq1  ACACTCAACCCAAATTCCTGTTACCTCTGTCAGCAAACAGCCTGCCCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCAACCCAAATTCCTGTTACCTCTGTCAGCAAACAGCCTGCCCCAT  750

seq1  GAGGCTGTCAGGAATACGAAGAGAACTCCCCTGCTCCATCTGCTCAGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGTCAGGAATACGAAGAGAACTCCCCTGCTCCATCTGCTCAGCAA  800

seq1  ACTTTCATCGTCCGTACGGGCTCTTTTAATGCACTTCTAACGCTGCTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCATCGTCCGTACGGGCTCTTTTAATGCACTTCTAACGCTGCTTCT  850

seq1  GTGTGAATACACACCGCTACACACTGACTGGACAGTGACATTCTCTCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAATACACACCGCTACACACTGACTGGACAGTGACATTCTCTCAGA  900

seq1  ATGCCACTGTATCCCCTTGGGGGCTGCCTGTGGGATAAGAACTTGAAAGA  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATGCCACTGTATCCCCTTGGGGGCTGCCTGT-GGATAAGAACTTGAAAGA  949

seq1  AGTGG-AAGGAGTCCTGCCCCTCTTCCCAGCCTTCCTTCTAACCAAGCAG  999
      ||||| ||| ||||||||||||||| |||||||| ||||||||| |||||
seq2  AGTGGAAAGAAGTCCTGCCCCTCTT-CCAGCCTT-CTTCTAACC-AGCAG  996

seq1  CTTCCCTCCAACAGACCTACTTCAAAAGTCCAGACCCAGTGAAGTCACA-  1048
      ||||||| ||||||||||||||||||  ||||||||||||||||| ||| 
seq2  CTTCCCTTCAACAGACCTACTTCAAAGTTCCAGACCCAGTGAAGT-ACAC  1045

seq1  CATGACCTCATAAACCTCCCACTTAACTGTTTAA  1082
      ||||||||| ||||||||||||||||||||||||
seq2  CATGACCTC-TAAACCTCCCACTTAACTGTTTAA  1078

seq1: chr8_70503929_70504754
seq2: B6Ng01-086E01.g_298_1130

seq1  ATTGCTCAACGGTTAAGTACTGACCGCGCTTCCAGAAGACAGAGTTAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCAACGGTTAAGTACTGACCGCGCTTCCAGAAGACAGAGTTAAAC  50

seq1  TCCCAACACCCATGTGGCAGCTAACAAGAATCAGTAACTCTAGTTTCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACACCCATGTGGCAGCTAACAAGAATCAGTAACTCTAGTTTCCAA  100

seq1  TCTGATACTTTTTCTGCCCTCTGAGGGCATAGCACACACATGGTACTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATACTTTTTCTGCCCTCTGAGGGCATAGCACACACATGGTACTCAG  150

seq1  ACAAACATATATGCTCACAAGACATGAAATAAAAAGTACTTTTAAAAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACATATATGCTCACAAGACATGAAATAAAAAGTACTTTTAAAAACT  200

seq1  ATTATCAATGAAAAGGAGGTAATTTACAGAGAAAAGCAGAGAGATGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCAATGAAAAGGAGGTAATTTACAGAGAAAAGCAGAGAGATGGAGA  250

seq1  GGAGAGGAAGGCTGGACCAGTCTGAAGGATCTCTGGTTCCTTCGATGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGAAGGCTGGACCAGTCTGAAGGATCTCTGGTTCCTTCGATGCTC  300

seq1  CTGGGAACACTTTCATGGTCTGTGAAAAGGCACAGCACAGAGTTTCTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAACACTTTCATGGTCTGTGAAAAGGCACAGCACAGAGTTTCTGTA  350

seq1  GATTTCAGACATTCCTTTATGCAAAGCCTCCACGATCAGTGGTTTCAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAGACATTCCTTTATGCAAAGCCTCCACGATCAGTGGTTTCAAGT  400

seq1  CCTAAAACAACAACCCAGACAAAGAAACAAACCAAGAACAGATAACTAT-  449
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCTAAAACAACAACCCAGACAAAGAAACAAACCAAGAACAGATAACTATA  450

seq1  AAATTCCTCAAGTTTAAAATTAAAACACTAGGTTCAACAACAAAGC-TTG  498
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAATTCCTCAAGTTTAAAATTAAAACACTAGGTTCAACAACAAAGCTTTG  500

seq1  TCCTCTGACCTCCATATATGTTCAGTGGTACATTTACAC-TTGCATTGAC  547
      ||||||||||||||||||||||||||||||||||||||| |||| |||||
seq2  TCCTCTGACCTCCATATATGTTCAGTGGTACATTTACACTTTGCTTTGAC  550

seq1  ACATAAC-AAACACACACACACACACACACACACACACACACACACATAC  596
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACAAAACACACACACACACACACACACACACACACACACACATAC  600

seq1  ACACCACA-TTCAAGCT-CTGACACACAAATAACCTCCAAAACCAAATGC  644
      |||||||| |||||||| ||||||||||||| ||||||||||||||   |
seq2  ACACCACATTTCAAGCTCCTGACACACAAAT-ACCTCCAAAACCAATGCC  649

seq1  CAACAGCATTACCACATCCTTAAATAAAACTAGAAGTGAATAATAACAAT  694
      || || ||||||| |||||||||   ||||||||||||||||  ||||  
seq2  CACCACCATTACCCCATCCTTAA--TAAACTAGAAGTGAATATCAACATA  697

seq1  ATTCATGATATATTCATAAATTTTAGTTTCTTT-TCATTCAACTTT-CAT  742
       |||| |||||| |||||||||||||||||||| ||||| |||||| |||
seq2  TTTCAGGATATA-TCATAAATTTTAGTTTCTTTATCATT-AACTTTCCAT  745

seq1  AAACAAAAGTCAGATTTATTAAAT-GTTTTGCCAAATAGACTTTTTTTT-  790
      || ||||||||| ||||||||||| |||||||||||||||||||||||| 
seq2  AACCAAAAGTCAAATTTATTAAATGGTTTTGCCAAATAGACTTTTTTTTT  795

seq1  -CTATT-GAACTTTGCACCAAAGAATGAGTATAAGATG  826
       ||||| |||||| |  ||||| |||||||||||||||
seq2  CCTATTGGAACTTGGACCCAAAAAATGAGTATAAGATG  833