BAC Information

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BAC

Clone NameB6Ng01-088N06
Chromosome8 (Build37)
Map Location 60,572,400 - 60,733,678
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040515, Hand2, Scrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634, LOC100040711
Downstream gene4930431L04Rik, BC030500, LOC665116, LOC436042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088N06.bB6Ng01-088N06.g
ACCDH901576DH901577
length1,0921,108
definitionDH901576|Mus musculus domesticus DNA, BAC clone: B6Ng01-088N06, 5' end.DH901577|Mus musculus domesticus DNA, BAC clone: B6Ng01-088N06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,572,400 - 60,573,496)(60,732,554 - 60,733,678)
sequence
gaattctttatagataaaacactgctcagcaatctggttaataattcatg
ctttattctccttaaagaaacttagtgcacttgcttggtggtttatgctt
tctaagtattcttgaattaaatatttaattgtatagtgacatcaactgtt
taagtgtgatattcctgctatgccactcttgggtagatattcaaaggact
ccatacctttgacaaggtgcttactcattcttgagttcatacaggaaagg
gaaacagctagatgccatatcggctgatgaaagaataaggaaaaggtgtt
gtgtttacacggcggaatattactcagctgttaaaaagtggtgttcacag
gtaagaagaaggacctggagacaagcatcctgagtgaggaaacacagacc
cagaaaggcaaacattgcatattttctctcatgtggaatttgaatcttca
catatgtgtgattcatttggaaaatgcatagacagtgttttgcaaccttc
ctaatgttgtgacctttaatacacttcctcatgttgtggggactcccatt
cataaaattattttgttgcctactttctccttaaaagcaactttactact
gctaggaatcataatataaatgtctgatgtgcagaatatccaatatgttg
ctcccgtggaagacgacatattcaataatctttatgcttggcctcaccaa
attggtcttgatggggaaataagggacacatcgttgggtgagatgagaag
gaggcagatctgggaaaactgaaggagcaagtgtggtccatggccagtct
gtttatttcacgtggtgcaagtgatgctgtggtccaagctcgattctgct
ctttttttgtgtctgtcaccatcaaggttctgtgattgctaacatgattt
tcaggcttgaaagcagttatacaaaaatgtcctacttatgattatttgaa
agacccaagttatctggagttatttttaattcgtaccacttacatgaagt
ttgattcaatacacccatagcagagaaaccatgttgtctctagtatcatg
agatgagcatttctgttatgctgggctcattacctctcttct
gaattcatagtgtttgagaccttgagagttggtttttttgtttgttttgt
tttgttttgttttgttttgttttgttttgatttacaaagtccattatatt
tcagaaatatttctgtttctctgaaaaactatttattgcaactgtccatg
gataatgcattcatatactcacatggaatcattacataaagaaaaaaaaa
acaggtcatgaaagagtaaatgaaatgggctgaaaatactttgcatagaa
tgtcccaaacagctgaaagaattttgcatgaaattaaaaattacaatttt
cactaggcttgtattagctgtataaaacttaaatgaatatgagcacaggg
agagggcttagaggaaagttttgtgacataatcatgaggaccagagtttg
gcttctcagcatcatataagagacagacaggaatggtgatgtttagtcaa
acacatgggaggtagaggcagagatccctgggttaatggttggcagtaag
ctctggcttctgtgagagatcctgcctcagtacattaagtagagagagat
gtaggacgtaaaccaatgccaaccccagcatctcacacacacacacacac
acacacacacacacacacacgacataaactgtaaatgtgatttgattttc
agctgggcgtggtggcacatgcctttaatcccagctctcaggagcagagg
cagacagatttctgagttcgaggccagcctggtctacaaagagagctcca
ggacagccagggctatacagagaaaccctgaattttcatttctgggtggc
tgaaggtttgcatgctgccatagaatattacaccctaaagaaatttgttc
ttctggaaatagagccacttaagattgctggactcagtcatctctaacaa
ttaccacaaactaccagacatattaccccacattcttttcctaattgacc
gagtgagaagtgaatgggaagctgaatattgaagctgtgtaaagcttatt
cagattgacagatggtgtttattatctttgagcatctgtgcttgtctgtc
tttttcttagacacaaaatggagtctcaatctccagcatgaatggatctt
aattctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_60572400_60573496
seq2: B6Ng01-088N06.b_49_1140

seq1  GAATTCTTTATAGATAAAACACTGCTCAGCAATCTGGTTAATAATTCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATAGATAAAACACTGCTCAGCAATCTGGTTAATAATTCATG  50

seq1  CTTTATTCTCCTTAAAGAAACTTAGTGCACTTGCTTGGTGGTTTATGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTCTCCTTAAAGAAACTTAGTGCACTTGCTTGGTGGTTTATGCTT  100

seq1  TCTAAGTATTCTTGAATTAAATATTTAATTGTATAGTGACATCAACTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTATTCTTGAATTAAATATTTAATTGTATAGTGACATCAACTGTT  150

seq1  TAAGTGTGATATTCCTGCTATGCCACTCTTGGGTAGATATTCAAAGGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTGATATTCCTGCTATGCCACTCTTGGGTAGATATTCAAAGGACT  200

seq1  CCATACCTTTGACAAGGTGCTTACTCATTCTTGAGTTCATACAGGAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACCTTTGACAAGGTGCTTACTCATTCTTGAGTTCATACAGGAAAGG  250

seq1  GAAACAGCTAGATGCCATATCGGCTGATGAAAGAATAAGGAAAAGGTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGCTAGATGCCATATCGGCTGATGAAAGAATAAGGAAAAGGTGTT  300

seq1  GTGTTTACACGGCGGAATATTACTCAGCTGTTAAAAAGTGGTGTTCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTACACGGCGGAATATTACTCAGCTGTTAAAAAGTGGTGTTCACAG  350

seq1  GTAAGAAGAAGGACCTGGAGACAAGCATCCTGAGTGAGGAAACACAGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAGAAGGACCTGGAGACAAGCATCCTGAGTGAGGAAACACAGACC  400

seq1  CAGAAAGGCAAACATTGCATATTTTCTCTCATGTGGAATTTGAATCTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGGCAAACATTGCATATTTTCTCTCATGTGGAATTTGAATCTTCA  450

seq1  CATATGTGTGATTCATTTGGAAAATGCATAGACAGTGTTTTGCAACCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTGTGATTCATTTGGAAAATGCATAGACAGTGTTTTGCAACCTTC  500

seq1  CTAATGTTGTGACCTTTAATACACTTCCTCATGTTGTGGGGACTCCCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGTTGTGACCTTTAATACACTTCCTCATGTTGTGGGGACTCCCATT  550

seq1  CATAAAATTATTTTGTTGCCTACTTTCTCCTTAAAAGCAACTTTACTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATTATTTTGTTGCCTACTTTCTCCTTAAAAGCAACTTTACTACT  600

seq1  GCTAGGAATCATAATATAAATGTCTGATGTGCAGAATATCCAATATGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGAATCATAATATAAATGTCTGATGTGCAGAATATCCAATATGTTG  650

seq1  CTCCCGTGGAAGACGACATATTCAATAATCTTTATGCTTGGCCTCACCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCGTGGAAGACGACATATTCAATAATCTTTATGCTTGGCCTCACCAA  700

seq1  ATTGGTCTTGATGGGGAAATAAGGGACACATCGTTGGGTGAGATGAGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTCTTGATGGGGAAATAAGGGACACATCGTTGGGTGAGATGAGAAG  750

seq1  GAGGCAGATCTGGGAAAACTGAAGGAGCAAGTGTGGTCCATGGCCAGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGATCTGGGAAAACTGAAGGAGCAAGTGTGGTCCATGGCCAGTCT  800

seq1  GTTTATTTCAGGTGGTGCAAGTGATGCTGTGGTCCAAGCTCGATTCTGCT  850
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTTCACGTGGTGCAAGTGATGCTGTGGTCCAAGCTCGATTCTGCT  850

seq1  CTTTTTTTGTGTCTGTCACCATCAAGGTTCTGTGATTGCTAACATGATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTGTGTCTGTCACCATCAAGGTTCTGTGATTGCTAACATGATTT  900

seq1  TCAGGGCTTGAAAGCAGTTATACAAAAAATGTCCTACTTATGATTATTTG  950
      ||| ||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCA-GGCTTGAAAGCAGTTATAC-AAAAATGTCCTACTTATGATTATTTG  948

seq1  AAAGACCCAAGGTTTATCTGGAGTTATTTTTAATTCGTACCACTTACATG  1000
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  AAAGACCCAAG--TTATCTGGAGTTATTTTTAATTCGTACCACTTACATG  996

seq1  AAGTTTGATTCAAATACAACCCATAGCAGAGAAACCATG-TGTCTCCTAG  1049
      ||||||||||| ||||| ||||||||||||||||||||| ||||| ||||
seq2  AAGTTTGATTC-AATAC-ACCCATAGCAGAGAAACCATGTTGTCT-CTAG  1043

seq1  TATCATGAGATGAGCATTTCTGTTATGCTGGGCTTCATT--TACTCTTCT  1097
      ||||||||||||||||||||||||||||||||| |||||    |||||||
seq2  TATCATGAGATGAGCATTTCTGTTATGCTGGGC-TCATTACCTCTCTTCT  1092

seq1: chr8_60732554_60733678
seq2: B6Ng01-088N06.g_69_1176 (reverse)

seq1  AGAGAATATAAAGATCCATTCATGCTGAGAATTTAAAGAACTCCATTATG  50
      |||||  || |||||||||||||||||   ||| |    |||||||| ||
seq2  AGAGA--ATTAAGATCCATTCATGCTGGAGATTGA---GACTCCATTTTG  45

seq1  TTGTCTAAG-AAAAGACAGACAGGCACAGATGCTCAAAAGATAAATTAAA  99
       |||||||| |||||||||||| |||||||||||| ||||||||  ||||
seq2  -TGTCTAAGAAAAAGACAGACAAGCACAGATGCTC-AAAGATAA--TAAA  91

seq1  CACCATCTGTCAATCTGAAATAAAGCTTTAACACAAGCCTTCAAATATTC  149
      |||||||||||||||||||   ||||||| |||||   |||| |||||||
seq2  CACCATCTGTCAATCTGAA--TAAGCTTT-ACACA--GCTTC-AATATTC  135

seq1  AGCTTCCCATTCACTTTCTCACTTCGGTCAATTAGGAAAAGAATGTGGGG  199
      |||||||||||||| ||||||| |||||||||||||||||||||||||||
seq2  AGCTTCCCATTCAC-TTCTCAC-TCGGTCAATTAGGAAAAGAATGTGGGG  183

seq1  TAATATGTCTGGTAGTTTGTGGGTAATTGTTAGAGATGACTGAGTCCAGC  249
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TAATATGTCTGGTAGTTTGT-GGTAATTGTTAGAGATGACTGAGTCCAGC  232

seq1  AATCTTAAGTGGCTCTATTTCCAGAAGAACAAATTTCTTTAGGGTGTAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTAAGTGGCTCTATTTCCAGAAGAACAAATTTCTTTAGGGTGTAAT  282

seq1  ATTCTATGGCAGCATGCAAACCTTCAGCCACCCAGAAATGAAAATTCAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATGGCAGCATGCAAACCTTCAGCCACCCAGAAATGAAAATTCAGG  332

seq1  GTTTCTCTGTATAGCCCTGGCTGTCCTGGAGCTCTCTTTGTAGACCAGGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTGTATAGCCCTGGCTGTCCTGGAGCTCTCTTTGTAGACCAGGC  382

seq1  TGGCCTCGAACTCAGAAATCTGTCTGCCTCTGCTCCTGAGAGCTGGGATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCGAACTCAGAAATCTGTCTGCCTCTGCTCCTGAGAGCTGGGATT  432

seq1  AAAGGCATGTGCCACCACGCCCAGCTGAAAATCAAATCACATTTACAGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCATGTGCCACCACGCCCAGCTGAAAATCAAATCACATTTACAGTT  482

seq1  TATGTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGATGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGATGCT  532

seq1  GGGGTTGGCATTGGTTTACGTCCTACATCTCTCTCTACTTAATGTACTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTGGCATTGGTTTACGTCCTACATCTCTCTCTACTTAATGTACTGA  582

seq1  GGCAGGATCTCTCACAGAAGCCAGAGCTTACTGCCAACCATTAACCCAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGATCTCTCACAGAAGCCAGAGCTTACTGCCAACCATTAACCCAGG  632

seq1  GATCTCTGCCTCTACCTCCCATGTGTTTGACTAAACATCACCATTCCTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTGCCTCTACCTCCCATGTGTTTGACTAAACATCACCATTCCTGT  682

seq1  CTGTCTCTTATATGATGCTGAGAAGCCAAACTCTGGTCCTCATGATTATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTTATATGATGCTGAGAAGCCAAACTCTGGTCCTCATGATTATG  732

seq1  TCACAAAACTTTCCTCTAAGCCCTCTCCCTGTGCTCATATTCATTTAAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAACTTTCCTCTAAGCCCTCTCCCTGTGCTCATATTCATTTAAGT  782

seq1  TTTATACAGCTAATACAAGCCTAGTGAAAATTGTAATTTTTAATTTCATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACAGCTAATACAAGCCTAGTGAAAATTGTAATTTTTAATTTCATG  832

seq1  CAAAATTCTTTCAGCTGTTTGGGACATTCTATGCAAAGTATTTTCAGCCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTCTTTCAGCTGTTTGGGACATTCTATGCAAAGTATTTTCAGCCC  882

seq1  ATTTCATTTACTCTTTCATGACCTGTTTTTTTTTTCTTTATGTAATGATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTTACTCTTTCATGACCTGTTTTTTTTTTCTTTATGTAATGATT  932

seq1  CCATGTGAGTATATGAATGCATTATCCATGGACAGTTGCAATAAATAGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGAGTATATGAATGCATTATCCATGGACAGTTGCAATAAATAGTT  982

seq1  TTTCAGAGAAACAGAAATATTTCTGAAATATAATGGACTTTGTAAATCAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAGAAACAGAAATATTTCTGAAATATAATGGACTTTGTAAATCAA  1032

seq1  AACAAAACAAAACAAAACAAAACAAAACAAAACAAACAAAAAAACCAACT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAAACAAAACAAAACAAAACAAAACAAACAAAAAAACCAACT  1082

seq1  CTCAAGGTCTCAAACACTATGAATTC  1125
      ||||||||||||||||||||||||||
seq2  CTCAAGGTCTCAAACACTATGAATTC  1108