BAC Information

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BAC

Clone NameB6Ng01-089B06
Chromosome8 (Build37)
Map Location 60,838,848 - 60,839,992
singlet/doubletsinglet
Overlap genenone
Upstream geneScrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634, LOC100040711
Downstream gene4930431L04Rik, BC030500, LOC665116, LOC436042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089B06.g
ACCDH901755
length1,101
definitionDH901755|Mus musculus domesticus DNA, BAC clone: B6Ng01-089B06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttacatgactcagtcaggactaatgagaactaagtctgtgggag
ctgaagacaggggaacttgtgaaattcctctttcctaatgaaggatttga
attgatgggctgctgcttttttctgtcttcgtgttaaggactgggctatg
tttccatagctgttacagcagttctgtgtttttaagagaggcagcattga
aaaagacagaagagtctagagatgccagctttatatgactggttcatttg
ctgtccaattttattatattaatagaatacatttaaaatgatgaagttgg
atttctgatacttgctgtcacgaatcatcataactgactcagttttaaat
tatgacagtatgagagtgtcataaggacattatatagttgatttaaaatt
tttataagcaatgacggatttcatcaaaacactgaaggttgatgctctca
gtgtaatacagtcatgtgctgtgttattatcgttttgttcctgtatgact
tcattcagaaaaaagaaagctgagctattaaaatattaatattcatctcc
ttagtaatgggtgtgaatatgtggaattccattagcatagtcttccattt
aactatgtcatttcctgcccccatatatttttatagcaatttaaaatacg
ccatatttagaatcatttagataactgctggagaacagactacatttgag
aacctacatttgcatttcttttgtaattaagtcatatgcaatgattctct
gaaatgatgtcattccacttttgatattttaacaactaggtctttttaaa
gattgccttaaagttaaaacacatttttttgctatttttcatatttgatt
tacttaaattcctataacaaaaactttcactagaaaatactttccactaa
agatattttcaaaaagatgacacagcttatgagccacagtctcagactgc
acattttactagctctctcagatgctcagatctctgtgctagctactact
ttgtcacagtcatagcagcagacacagaatatggtatgttgcatcctcgt
attgcatcatttgatctactgactgtgctcatgaatgggcagtacgatgc
t
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_60838848_60839992
seq2: B6Ng01-089B06.g_70_1170

seq1  GAATTCTTACATGACTCAGTCAGGACTAATGAGAACTAAGTCTGTGGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACATGACTCAGTCAGGACTAATGAGAACTAAGTCTGTGGGAG  50

seq1  CTGAAGACAGGGGAACTTGTGAAATTCCTCTTTCCTAATGAAGGATTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGACAGGGGAACTTGTGAAATTCCTCTTTCCTAATGAAGGATTTGA  100

seq1  ATTGATGGGCTGCTGCTTTTTTCTGTCTTCGTGTTAAGGACTGGGCTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATGGGCTGCTGCTTTTTTCTGTCTTCGTGTTAAGGACTGGGCTATG  150

seq1  TTTCCATAGCTGTTACAGCAGTTCTGTGTTTTTAAGAGAGGCAGCATTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATAGCTGTTACAGCAGTTCTGTGTTTTTAAGAGAGGCAGCATTGA  200

seq1  AAAAGACAGAAGAGTCTAGAGATGCCAGCTTTATATGACTGGTTCATTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACAGAAGAGTCTAGAGATGCCAGCTTTATATGACTGGTTCATTTG  250

seq1  CTGTCCAATTTTATTATATTAATAGAATACATTTAAAATGATGAAGTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCAATTTTATTATATTAATAGAATACATTTAAAATGATGAAGTTGG  300

seq1  ATTTCTGATACTTGCTGTCACGAATCATCATAACTGACTCAGTTTTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGATACTTGCTGTCACGAATCATCATAACTGACTCAGTTTTAAAT  350

seq1  TATGACAGTATGAGAGTGTCATAAGGACATTATATAGTTGATTTAAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACAGTATGAGAGTGTCATAAGGACATTATATAGTTGATTTAAAATT  400

seq1  TTTATAAGCAATGACGGATTTCATCAAAACACTGAAGGTTGATGCTCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAGCAATGACGGATTTCATCAAAACACTGAAGGTTGATGCTCTCA  450

seq1  GTGTAATACAGTCATGTGCTGTGTTATTATCGTTTTGTTCCTGTATGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATACAGTCATGTGCTGTGTTATTATCGTTTTGTTCCTGTATGACT  500

seq1  TCATTCAGAAAAAAGAAAGCTGAGCTATTAAAATATTAATATTCATCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCAGAAAAAAGAAAGCTGAGCTATTAAAATATTAATATTCATCTCC  550

seq1  TTAGTAATGGGTGTGAATATGTGGAATTCCATTAGCATAGTCTTCCATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAATGGGTGTGAATATGTGGAATTCCATTAGCATAGTCTTCCATTT  600

seq1  AACTATGTCATTTCCTGCCCCCATATATTTTTATAGCAATTTAAAATACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGTCATTTCCTGCCCCCATATATTTTTATAGCAATTTAAAATACG  650

seq1  CCATATTTAGAATCATTTAGATAACTGCTGGAGAACAGACTACATTTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTTAGAATCATTTAGATAACTGCTGGAGAACAGACTACATTTGAG  700

seq1  AACCTACATTTGCATTTCTTTTGTAATTAAGTCATATGCAATGATTCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTACATTTGCATTTCTTTTGTAATTAAGTCATATGCAATGATTCTCT  750

seq1  GAAATGATGTCATTCCACTTTTGATATTTTAACAACTAGGTCTTTTTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGATGTCATTCCACTTTTGATATTTTAACAACTAGGTCTTTTTAAA  800

seq1  GATTGCCTTAAAGTTAAAAACACATTTTTTTGCTATTTTTCATATTTGAT  850
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GATTGCCTTAAAGTT-AAAACACATTTTTTTGCTATTTTTCATATTTGAT  849

seq1  TTACTTAAAATTCCTATAACAAAAACTTTCAACTAGAAAATACTTTCCAC  900
      |||||| ||||||||||||||||||||||| |||||||||||||||||||
seq2  TTACTT-AAATTCCTATAACAAAAACTTTC-ACTAGAAAATACTTTCCAC  897

seq1  TAAAAGATAATTTTCAAAAAGGAATGACACAGCTTATGAGCCACAGTCCT  950
      | |||||| ||||||||||||  |||||||||||||||||||||||||  
seq2  T-AAAGAT-ATTTTCAAAAAG--ATGACACAGCTTATGAGCCACAGTC--  941

seq1  TCAGGACTGCCAACAATTTTTACTAGGCTTCTCTCAGATTGCTCAGATTC  1000
      ||| ||||||  |||  |||||||||   ||||||||| |||||||| ||
seq2  TCA-GACTGC--ACA--TTTTACTAG--CTCTCTCAGA-TGCTCAGA-TC  982

seq1  TCTGTTGCTAGCTACTAACTTTGTCACAAGTCATTAGCAGCAAGGACAAC  1050
      |||| ||||||||||| |||||||||| ||||| ||||||||  ||| ||
seq2  TCTG-TGCTAGCTACT-ACTTTGTCAC-AGTCA-TAGCAGCA--GAC-AC  1025

seq1  AGAGATAATGGTATATGTTTGCCAATACTTCTGTTAATTTGCAATTCATT  1100
      ||| || |||||||    ||||  || ||  |      |||||  |||||
seq2  AGA-AT-ATGGTAT---GTTGC--ATCCTCGT-----ATTGCA--TCATT  1061

seq1  TGGATCTACTGACTGTGCTCAATGGATTGTGGCAGTACAGATGCT  1145
      | |||||||||||||||||| ||| ||   |||||||| ||||||
seq2  T-GATCTACTGACTGTGCTC-ATGAAT--GGGCAGTAC-GATGCT  1101