BAC Information

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BAC

Clone NameB6Ng01-089B15
Chromosome8 (Build37)
Map Location 4,199,204 - 4,354,635
singlet/doubletdoublet
Overlap geneB130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25
Upstream geneInsr, A430078G23Rik, Arhgef18, Pex11c, 1700019B03Rik, Zfp358, Mcoln1, Pnpla6, C330021F23Rik, 2310057J16Rik, Xab2, Pcp2, Stxbp2, Retn, 1810033B17Rik, LOC664858, Trappc5, Fcer2a, Clec4g, Cd209a, LOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g
Downstream geneLOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687, LOC436026, Slc10a2, LOC434275
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089B15.bB6Ng01-089B15.g
ACCDH901770DH901771
length630916
definitionDH901770|Mus musculus domesticus DNA, BAC clone: B6Ng01-089B15, 5' end.DH901771|Mus musculus domesticus DNA, BAC clone: B6Ng01-089B15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,354,008 - 4,354,635)(4,199,204 - 4,200,126)
sequence
gaattctggggccaggcagtggtggctcaccccttaatcccagcacttgg
gaggcagaggcaagcggatttctgagtttgaggccagcctggtctacaga
gtgagttccagtacagccagggctacacagagaaaccctgtctcgcaaaa
aaaaaaaaaaaaaaaaaaaaaaaaaagaaaaagaagagaaagaaaaagaa
accctgaataaaacaaccgtcataaacacaactgttgcaaactcatttgc
atgtagcacacacacaccaaagacaaaatggaaggcctagagatgtatct
tagttgtagaacacttacccagaatgctgaaggactcaatgcacaatgct
aaaagggagaaaaagtaaaaagcataggaaatatataatcgctgtttttc
tccctgagatgttggcctgaggccttacccacctgaggcgctcttccagt
ggactagccttttcctagctgtcaagattctcatcgccctcttcacattc
atgtcctctggattcccacacactactttctggcggaagtagaatctaca
gaaggtgggaagatgagtgccaagttaggacatgaggatctaaggcaaag
catgatgcccttcccagcaaagggaggtcc
gaattctgagatgggggctgttccagagagtcttagtggctgctggaagc
aaaggaaaagggggtcaggacccccttgagacacaggggaaagactaggc
agaaacagacttctgagggtagtatagatgctgactgctccttatacctg
cttacacacgcgaatgcatacacacaggcacacatgcacacgccacaggg
agcgggagctgaagggttttttttatttttatacttttagacagggtgtc
tttgtgtatctctggctgtcctgggtcttgctttgtagaccaggctggtc
tcagactcacagagatccccctgcctctgcctcctgagtgctggaattaa
aggcattcaacaacacacccagctcaggttttcttgtgggttgtttgttt
gtttgtttgtttttaataattttgagccaggcagtggtggtacaagcctt
taatcctaggactcaggaggcagaggattttgtatagctttttgctaccc
cacctaagctctggcaccagagaatatttgaatctgtggatgaaaaacac
agacacacactcattgctcaattttcaacttgacttatcggctcaatttg
ctgggcattattaaatctcccgaggctagtatgccctccccagtgctctt
agctcagcatcctcaatctaacctcaacctttagctgttcagttttttta
gaccccgctcaacatctcaccctcccacctggagagagcaaccacaggcc
atttcctcccaagatctcacatggctgcttggtttgttttttgggttttt
tgtttgggttttgggttttgttttttcttccaaagcaggcaaattcttgc
gtctgcagcttgcctgcttcccagaaattctgatatctttctcccacatg
cccatggcatctttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_4354008_4354635
seq2: B6Ng01-089B15.b_47_676 (reverse)

seq1  GGACCTCCCTTTGCTGGG-AGGGCATCATGC-TTGCCTTAGATCCTCATG  48
      |||||||||||||||||| |||||||||||| ||||||||||||||||||
seq2  GGACCTCCCTTTGCTGGGAAGGGCATCATGCTTTGCCTTAGATCCTCATG  50

seq1  TCCTAACTTGGCACTCATCTTCCCACCTTCTGTAGATTCTACTTCCGCCA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAACTTGGCACTCATCTTCCCACCTTCTGTAGATTCTACTTCCGCCA  100

seq1  GAAAGTAGTGTGTGGGAATCCAGAGGACATGAATGTGAAGAGGGCGATGA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTAGTGTGTGGGAATCCAGAGGACATGAATGTGAAGAGGGCGATGA  150

seq1  GAATCTTGACAGCTAGGAAAAGGCTAGTCCACTGGAAGAGCGCCTCAGGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTGACAGCTAGGAAAAGGCTAGTCCACTGGAAGAGCGCCTCAGGT  200

seq1  GGGTAAGGCCTCAGGCCAACATCTCAGGGAGAAAAACAGCGATTATATAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAGGCCTCAGGCCAACATCTCAGGGAGAAAAACAGCGATTATATAT  250

seq1  TTCCTATGCTTTTTACTTTTTCTCCCTTTTAGCATTGTGCATTGAGTCCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATGCTTTTTACTTTTTCTCCCTTTTAGCATTGTGCATTGAGTCCT  300

seq1  TCAGCATTCTGGGTAAGTGTTCTACAACTAAGATACATCTCTAGGCCTTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATTCTGGGTAAGTGTTCTACAACTAAGATACATCTCTAGGCCTTC  350

seq1  CATTTTGTCTTTGGTGTGTGTGTGCTACATGCAAATGAGTTTGCAACAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGTCTTTGGTGTGTGTGTGCTACATGCAAATGAGTTTGCAACAGT  400

seq1  TGTGTTTATGACGGTTGTTTTATTCAGGGTTTCTTTTTCTTTCTCTTCTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTATGACGGTTGTTTTATTCAGGGTTTCTTTTTCTTTCTCTTCTT  450

seq1  TTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGAGACAGGGTTTCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGAGACAGGGTTTCT  500

seq1  CTGTGTAGCCCTGGCTGTACTGGAACTCACTCTGTAGACCAGGCTGGCCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAGCCCTGGCTGTACTGGAACTCACTCTGTAGACCAGGCTGGCCT  550

seq1  CAAACTCAGAAATCCGCTTGCCTCTGCCTCCCAAGTGCTGGGATTAAGGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCAGAAATCCGCTTGCCTCTGCCTCCCAAGTGCTGGGATTAAGGG  600

seq1  GTGAGCCACCACTGCCTGGCCCCAGAATTC  628
      ||||||||||||||||||||||||||||||
seq2  GTGAGCCACCACTGCCTGGCCCCAGAATTC  630

seq1: chr8_4199204_4200126
seq2: B6Ng01-089B15.g_70_985

seq1  GAATTCTGAGATGGGGGCTGTTCCAGAGAGTCTTAGTGGCTGCTGGAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGATGGGGGCTGTTCCAGAGAGTCTTAGTGGCTGCTGGAAGC  50

seq1  AAAGGAAAAGGGGGTCAGGACCCCCTTGAGACACAGGGGAAAGACTAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAAGGGGGTCAGGACCCCCTTGAGACACAGGGGAAAGACTAGGC  100

seq1  AGAAACAGACTTCTGAGGGTAGTATAGATGCTGACTGCTCCTTATACCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGACTTCTGAGGGTAGTATAGATGCTGACTGCTCCTTATACCTG  150

seq1  CTTACACACGCGAATGCATACACACAGGCACACATGCACACGCCACAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACACACGCGAATGCATACACACAGGCACACATGCACACGCCACAGGG  200

seq1  AGCGGGAGCTGAAGGGTTTTTTTTATTTTTATACTTTTAGACAGGGTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGGAGCTGAAGGGTTTTTTTTATTTTTATACTTTTAGACAGGGTGTC  250

seq1  TTTGTGTATCTCTGGCTGTCCTGGGTCTTGCTTTGTAGACCAGGCTGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTATCTCTGGCTGTCCTGGGTCTTGCTTTGTAGACCAGGCTGGTC  300

seq1  TCAGACTCACAGAGATCCCCCTGCCTCTGCCTCCTGAGTGCTGGAATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTCACAGAGATCCCCCTGCCTCTGCCTCCTGAGTGCTGGAATTAA  350

seq1  AGGCATTCAACAACACACCCAGCTCAGGTTTTCTTGTGGGTTGTTTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTCAACAACACACCCAGCTCAGGTTTTCTTGTGGGTTGTTTGTTT  400

seq1  GTTTGTTTGTTTTTAATAATTTTGAGCCAGGCAGTGGTGGTACAAGCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGTTTTTAATAATTTTGAGCCAGGCAGTGGTGGTACAAGCCTT  450

seq1  TAATCCTAGGACTCAGGAGGCAGAGGATTTTGTATAGC-TTTTGCTACCC  499
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TAATCCTAGGACTCAGGAGGCAGAGGATTTTGTATAGCTTTTTGCTACCC  500

seq1  CACCTAAGCTCTGGCACCAGAGAATA-TTGAATCTGTGGATGAAAAACAC  548
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CACCTAAGCTCTGGCACCAGAGAATATTTGAATCTGTGGATGAAAAACAC  550

seq1  AGACACACACTCATTGCTCAA-TTTCAACTTGACTTATCGGCTCAA-TTG  596
      ||||||||||||||||||||| |||||||||||||||||||||||| |||
seq2  AGACACACACTCATTGCTCAATTTTCAACTTGACTTATCGGCTCAATTTG  600

seq1  CTGGGCATTATT-AATCTCCCGAGGCTAGTATGCCCTCCCCAGTGCTCTT  645
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTGGGCATTATTAAATCTCCCGAGGCTAGTATGCCCTCCCCAGTGCTCTT  650

seq1  AGCTCAGCATCCTCAATCTAACCTCAACC-TTAGCTGTTCAGTTTTTTTA  694
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGCTCAGCATCCTCAATCTAACCTCAACCTTTAGCTGTTCAGTTTTTTTA  700

seq1  GACCCCGCTCAACATCTCACCCTCCCACCTGGAGAGAGCAACCACAGGCC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCGCTCAACATCTCACCCTCCCACCTGGAGAGAGCAACCACAGGCC  750

seq1  A-TTCCTCCCAAGATCTCACATGGCTGCTTGGTTTGTTTTTTGGTTTTTT  793
      | |||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATTTCCTCCCAAGATCTCACATGGCTGCTTGGTTTGTTTTTTGGGTTTTT  800

seq1  TTTGTTTTTGGTTTTTGGTTTTTGTTTTTTTCTCTCCAAAGCAGGGCAAA  843
          | ||||| |||||| ||||| |||||||| ||||||||| ||||||
seq2  ----TGTTTGGGTTTTGGGTTTTG-TTTTTTCT-TCCAAAGCA-GGCAAA  843

seq1  CTCCTGCGTCTGCCAGCTTGCCTGCTTCCCCAGAAGTCCTGACTATCCTT  893
       || |||||||| |||||||||||||| ||||||| | |||| ||| |||
seq2  TTCTTGCGTCTG-CAGCTTGCCTGCTT-CCCAGAAATTCTGA-TAT-CTT  889

seq1  CCGCCCAGCATTGCCCCATGGCATCTTTAC  923
       | |||| |||   ||||||||||||||||
seq2  TCTCCCA-CAT--GCCCATGGCATCTTTAC  916