BAC Information

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BAC

Clone NameB6Ng01-089C08
Chromosome8 (Build37)
Map Location 111,404,400 - 111,553,110
singlet/doubletdoublet
Overlap geneAtbf1
Upstream genenone
Downstream gene4922502B01Rik, Gm1943, LOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089C08.bB6Ng01-089C08.g
ACCDH901798DH901799
length939198
definitionDH901798|Mus musculus domesticus DNA, BAC clone: B6Ng01-089C08, 5' end.DH901799|Mus musculus domesticus DNA, BAC clone: B6Ng01-089C08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,552,471 - 111,553,110)(111,404,400 - 111,404,597)
sequence
gaattcataatcctcctgcttcagcctcctggatgttatgtttacaagca
tgagccaccattctgagctttgtatgaagtttttgaaattaagaaacttg
aaggtttttttaaaacagttttaagaagagaaattaatggaataatagcc
atatacttatggtctataatgtgatgcttcaatacatatgtatcattgta
gagtgattaactcaagctgatcctatcacttcttgtacttcccgttctaa
ttatgaaaacactgaacatctttcagaacttttgaaatatacaccgtatc
attataattgctgtcaccattctgtacagcaagccactcattgtcattct
tcccacttctaacttgctgccttatatttgtatgttgcatatgtatgcag
atatgccatgcatggcatgtgtatggaggtcagaggtgatccagggtgtt
ggtccttactttccattttgtctgaggcaaggtagccttgttgtttgctg
gttagctggtttatgaacatctcccatctcctgagtatgaaggcagtagt
atgtcaggttagctggcccatgaacttctcctgtctcctgaatatagagg
cagcagtataccaggttagctggcccgtgaacttctgtctctattttcca
tcttgcagtaggagcactaagattacaaacacattctcttaccctggttt
acatgggtaccggggatttggatttaggtcctcctacttgtatagcaaat
gctttaccttctgggcttcctttctccctggcctcctcctttctgctctt
tgatcagcatctctctctttccatgggaccccccttccagccaagatcag
ttgtccttctacttgatgcttgtgcacattgaagtggcttggattccacg
tataagcaacctcaggcagcttttgcctccccgtgcttg
aaaccaaatggagaaagtccctgtcaggcaaagacttaacattctgcata
tgatggcttgcttagtggccgactcgtgatattagcagtgcccaagacag
gaaatagcgtaggcttgtgtccaaaggcctcttgtgttaggaatgtcacg
gaactcgcataagtagaaagcaaggcagctgggggttggggggtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_111552471_111553110
seq2: B6Ng01-089C08.b_45_684 (reverse)

seq1  AGACAGAAGTTCACGGGCCAGCTAACCTGGTATACTGCTGCCTCTATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAAGTTCACGGGCCAGCTAACCTGGTATACTGCTGCCTCTATATT  50

seq1  CAGGAGACAGGAGAAGTTCATGGGCCAGCTAACCTGACATACTACTGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGACAGGAGAAGTTCATGGGCCAGCTAACCTGACATACTACTGCCT  100

seq1  TCATACTCAGGAGATGGGAGATGTTCATAAACCAGCTAACCAGCAAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACTCAGGAGATGGGAGATGTTCATAAACCAGCTAACCAGCAAACAA  150

seq1  CAAGGCTACCTTGCCTCAGACAAAATGGAAAGTAAGGACCAACACCCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTACCTTGCCTCAGACAAAATGGAAAGTAAGGACCAACACCCTGG  200

seq1  ATCACCTCTGACCTCCATACACATGCCATGCATGGCATATCTGCATACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCTCTGACCTCCATACACATGCCATGCATGGCATATCTGCATACAT  250

seq1  ATGCAACATACAAATATAAGGCAGCAAGTTAGAAGTGGGAAGAATGACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAACATACAAATATAAGGCAGCAAGTTAGAAGTGGGAAGAATGACAA  300

seq1  TGAGTGGCTTGCTGTACAGAATGGTGACAGCAATTATAATGATACGGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGCTTGCTGTACAGAATGGTGACAGCAATTATAATGATACGGTGT  350

seq1  ATATTTCAAAAGTTCTGAAAGATGTTCAGTGTTTTCATAATTAGAACGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCAAAAGTTCTGAAAGATGTTCAGTGTTTTCATAATTAGAACGGG  400

seq1  AAGTACAAGAAGTGATAGGATCAGCTTGAGTTAATCACTCTACAATGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACAAGAAGTGATAGGATCAGCTTGAGTTAATCACTCTACAATGATA  450

seq1  CATATGTATTGAAGCATCACATTATAGACCATAAGTATATGGCTATTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTATTGAAGCATCACATTATAGACCATAAGTATATGGCTATTATT  500

seq1  CCATTAATTTCTCTTCTTAAAACTGTTTTAAAAAAACCTTCAAGTTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAATTTCTCTTCTTAAAACTGTTTTAAAAAAACCTTCAAGTTTCTT  550

seq1  AATTTCAAAAACTTCATACAAAGCTCAGAATGGTGGCTCATGCTTGTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAAAAACTTCATACAAAGCTCAGAATGGTGGCTCATGCTTGTAAA  600

seq1  CATAACATCCAGGAGGCTGAAGCAGGAGGATTATGAATTC  640
      ||||||||||||||||||||||||||||||||||||||||
seq2  CATAACATCCAGGAGGCTGAAGCAGGAGGATTATGAATTC  640

seq1: chr8_111404400_111404597
seq2: B6Ng01-089C08.g_75_272

seq1  AAACCAAATGGAGAAAGTCCCTGTCAGGCAAAGACTTAACATTCTGCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAATGGAGAAAGTCCCTGTCAGGCAAAGACTTAACATTCTGCATA  50

seq1  TGATGGCTTGCTTAGTGGCCGACTCGTGATATTAGCAGTGCCCAAGACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGCTTGCTTAGTGGCCGACTCGTGATATTAGCAGTGCCCAAGACAG  100

seq1  GAAATAGCGTAGGCTTGTGTCCAAAGGCCTCTTGTGTTAGGAATGTCACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGCGTAGGCTTGTGTCCAAAGGCCTCTTGTGTTAGGAATGTCACG  150

seq1  GAACTCGCATAAGTAGAAAGCAAGGCAGCTGGGGGTTGGGGGGTGGGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCGCATAAGTAGAAAGCAAGGCAGCTGGGGGTTGGGGGGTGGGG  198