BAC Information

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BAC

Clone NameB6Ng01-090E10
Chromosome8 (Build37)
Map Location 63,346,369 - 63,516,849
singlet/doubletdoublet
Overlap gene2700029M09Rik, Clcn3, B230317F23Rik, Nek1
Upstream geneAadat, Mfap3l, LOC100040679
Downstream geneSh3rf1, EG664975, Cbr4, Palld, LOC100040872, BC013672
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090E10.bB6Ng01-090E10.g
ACCDH902624DH902625
length1,0611,057
definitionDH902624|Mus musculus domesticus DNA, BAC clone: B6Ng01-090E10, 5' end.DH902625|Mus musculus domesticus DNA, BAC clone: B6Ng01-090E10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,515,765 - 63,516,849)(63,346,369 - 63,347,441)
sequence
gaattcacatatatgtgcctatggtagccattcttattcaaattatcaca
ggaagaaaacagcaagaaaaaaaatccatgatttttcaagcagcactgag
catgttgataataaaaaaaaaatggtttcgctcagggctgccgtccacca
gcatggaagaagtaggaaatcaggctctgagaggtcagaaggctgtcaga
gggctctgaggagcatcccattgccaagaggccgttgactgaggtgaaaa
actgagcttcactctaacacagtggttcagtcttctcagccctcaaacca
tggaagcagaaaaccagttaagacattattacctatgtgagaaccaaagt
ggctagaactaaatcagaagaagtgataagaaacaactcactatattgtg
aaagcattgctaagagcacacagtaccaaaagagcagtcagtgatgacta
ccaggagttttggaacaaatggaaggatagagttcatgtttacaggagta
aggatattccctgaatgctcaacagtaaggtgagaaacaaggtaaataaa
tgagaatgagcaaaaatataaaatgtatgcattatatcatcttttggggg
tcctgaagccatctaaaattatgataatataaagaaaactgtgagtgagt
cagatgttaaactctgtaaaaagaacatgggtctgcagatgacccttcta
cagctcagaagcaggtaatgcagagtctagaaggaaatcatgaacactgg
agcaggaagggtctactgtcaataaagagagcattaccacactacctaga
tccagttttagaaaaaagacaccacatgagaatgctagagagtttaggga
cagccaagttccaaagaaaaatgagcgagtattatctttaaaggtttggc
atatagaaactacgtagttgaagacttaaaactaccaagacctgtctggc
agtagtgatatgtgtctttactcagcattctagccgagcagtgcatctct
gtgagtcagcccagatgtctacgaggagtcagacagcagggttaccagag
aatctttaaaa
gaattctatcctcagcattgtgtctattccaggctctgagctgaacataa
atagagcacacatttccaacaatatattcaacagattaagggaagtaaaa
aacagaagtcacacatttttaggtaaaaaggaaggagtgtgaatatacat
tgggatatcttaggagctacacaaaccatgagaaatgttactttgaatgc
cctgcttgtttcatgcccatatctcaatcactagcatgaaataaaaatag
atgttttttttctggcctcaaagcagaaagaatcatcaagcctgtagaac
aaatgccagccttttgaattgtctgagagctaaaattagtctgaatgagg
aacctcactctgtcagctgagggagacaaccgaatgtgggaggccagctg
aggacacggctggagagttttgcatagacgcgtctgagagatggaaaaaa
acctaatttccatttacaggagaaacaaatatgaggaggagaaggagtga
agtgtcctttggtggctcagtagttcattccagagcagatgacaggacag
tgtttcacaaaaccatttcatctctttggagacatccacaggtctttacc
acctcaaggtcacaaggaggaaaaaaaaatcccttttatttgggaaaaga
aataaatgttcttctatctgcttcagaggtggtagggagtttactgtgtt
cagctttagtccatttgtctctctctttttccttttggtttctagggagg
aaacagatgcaagaatgcaaatccagggctggggagatagttcagtgggt
tgacaagaggccttaccatctcagtcatgggaggtagaaacaagcagagc
cctcaagctcactgggaaaccagtctatctgagtcagtgagttcccgggt
caacaagagaccctgattcaaataagatcagagagatttaggaaggcacc
tcctagggtttcattgccgtgaagagacatcatgacaggtgactctataa
gaaaacatttcatttgggctgcttacagttcatagtttagtcatccatca
ttggtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_63515765_63516849
seq2: B6Ng01-090E10.b_49_1109 (reverse)

seq1  TTTTAAAAGAATTTCTCTGTGTAACCCTGGCTGTCCTTGAACTCCTCTGT  50
       ||| |||||  ||||||| |||||||| ||||||  || ||||||| ||
seq2  -TTTTAAAGA--TTCTCTG-GTAACCCT-GCTGTC--TG-ACTCCTC-GT  41

seq1  AGACCATTCTGGGCTTGAACTCACAGAGATGCACCTGCCTCGGCCTAGAA  100
      ||||   ||||||||   ||||||||||||||| ||| ||||| ||||||
seq2  AGAC--ATCTGGGCT--GACTCACAGAGATGCA-CTG-CTCGG-CTAGAA  84

seq1  TGCTGGAGTTAAAGACACATATTCACTACTGCCAGACAGGTCTTTGGTAG  150
      |||| ||| |||||||||||| |||||||||||||||||||| |||||||
seq2  TGCT-GAG-TAAAGACACATA-TCACTACTGCCAGACAGGTC-TTGGTAG  130

seq1  TTTTTAAGTTCTTCAACTACGTAGTTTCTTATATGCCAAACCTTTAAAGA  200
       ||||||| ||||||||||||||||||| |||||||||||||||||||||
seq2  -TTTTAAG-TCTTCAACTACGTAGTTTC-TATATGCCAAACCTTTAAAGA  177

seq1  TAATACTCGCTCATTTTTCTTTGGAACTTGGCTTGTCCCTAAACTCTCTA  250
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAATACTCGCTCATTTTTCTTTGGAACTTGGC-TGTCCCTAAACTCTCTA  226

seq1  GCATTCTCATGTGGTGTCTTTTTTCTAAAACTGGATCTAGGTAGTGTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTCATGTGGTGTCTTTTTTCTAAAACTGGATCTAGGTAGTGTGGT  276

seq1  AATGCTCTCCTTATTGACAGTAGACCCTTCCTGCTCCAGTGTTCATGATT  350
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTCTCTTTATTGACAGTAGACCCTTCCTGCTCCAGTGTTCATGATT  326

seq1  TCCTTCTAGACTCTGCATTACCTGCTTCTGAGCTGTAGAAGGGTCATCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTAGACTCTGCATTACCTGCTTCTGAGCTGTAGAAGGGTCATCTG  376

seq1  CAGACCCATGTTCTTTTTACAGAGTTTAACATCTGACTCACTCACAGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCCATGTTCTTTTTACAGAGTTTAACATCTGACTCACTCACAGTTT  426

seq1  TCTTTATATTATCATAATTTTAGATGGCTTCAGGACCCCCAAAAGATGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATATTATCATAATTTTAGATGGCTTCAGGACCCCCAAAAGATGAT  476

seq1  ATAATGCATACATTTTATATTTTTGCTCATTCTCATTTATTTACCTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGCATACATTTTATATTTTTGCTCATTCTCATTTATTTACCTTGTT  526

seq1  TCTCACCTTACTGTTGAGCATTCAGGGAATATCCTTACTCCTGTAAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCTTACTGTTGAGCATTCAGGGAATATCCTTACTCCTGTAAACAT  576

seq1  GAACTCTATCCTTCCATTTGTTCCAAAACTCCTGGTAGTCATCACTGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTATCCTTCCATTTGTTCCAAAACTCCTGGTAGTCATCACTGACT  626

seq1  GCTCTTTTGGTACTGTGTGCTCTTAGCAATGCTTTCACAATATAGTGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTTGGTACTGTGTGCTCTTAGCAATGCTTTCACAATATAGTGAGT  676

seq1  TGTTTCTTATCACTTCTTCTGATTTAGTTCTAGCCACTTTGGTTCTCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTATCACTTCTTCTGATTTAGTTCTAGCCACTTTGGTTCTCACA  726

seq1  TAGGTAATAATGTCTTAACTGGTTTTCTGCTTCCATGGTTTGAGGGCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAATAATGTCTTAACTGGTTTTCTGCTTCCATGGTTTGAGGGCTGA  776

seq1  GAAGACTGAACCACTGTGTTAGAGTGAAGCTCAGTTTTTCACCTCAGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTGAACCACTGTGTTAGAGTGAAGCTCAGTTTTTCACCTCAGTCA  826

seq1  ACGGCCTCTTGGCAATGGGATGCTCCTCAGAGCCCTCTGACAGCCTTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCCTCTTGGCAATGGGATGCTCCTCAGAGCCCTCTGACAGCCTTCTG  876

seq1  ACCTCTCAGAGCCTGATTTCCTACTTCTTCCATGCTGGTGGACGGCAGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCAGAGCCTGATTTCCTACTTCTTCCATGCTGGTGGACGGCAGCC  926

seq1  CTGAGCGAAACCATTTTTTTTTTATTATCAACATGCTCAGTGCTGCTTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCGAAACCATTTTTTTTTTATTATCAACATGCTCAGTGCTGCTTGA  976

seq1  AAAATCATGGATTTTTTTTCTTGCTGTTTTCTTCCTGTGATAATTTGAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATGGATTTTTTTTCTTGCTGTTTTCTTCCTGTGATAATTTGAAT  1026

seq1  AAGAATGGCTACCATAGGCACATATATGTGAATTC  1085
      |||||||||||||||||||||||||||||||||||
seq2  AAGAATGGCTACCATAGGCACATATATGTGAATTC  1061

seq1: chr8_63346369_63347441
seq2: B6Ng01-090E10.g_69_1125

seq1  GAATTCTATCCTCAGCATTGTGTCTATTCCAGGCTCTGAGCTGAACATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCCTCAGCATTGTGTCTATTCCAGGCTCTGAGCTGAACATAA  50

seq1  ATAGAGCACACATTTCCAACAATATATTCAACAGATTAAGGGAAGTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGCACACATTTCCAACAATATATTCAACAGATTAAGGGAAGTAAAA  100

seq1  AACAGAAGTCACACATTTTTAGGTAAAAAGGAAGGAGTGTGAATATACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAGTCACACATTTTTAGGTAAAAAGGAAGGAGTGTGAATATACAT  150

seq1  TGGGATATCTTAGGAGCTACACAAACCATGAGAAATGTTACTTTGAATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATATCTTAGGAGCTACACAAACCATGAGAAATGTTACTTTGAATGC  200

seq1  CCTGCTTGTTTCATGCCCATATCTCAATCACTAGCATGAAATAAAAATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTGTTTCATGCCCATATCTCAATCACTAGCATGAAATAAAAATAG  250

seq1  ATGTTTTTTTTCTGGCCTCAAAGCAGAAAGAATCATCAAGCCTGTAGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTTTTTCTGGCCTCAAAGCAGAAAGAATCATCAAGCCTGTAGAAC  300

seq1  AAATGCCAGCCTTTTGAATTGTCTGAGAGCTAAAATTAGTCTGAATGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCAGCCTTTTGAATTGTCTGAGAGCTAAAATTAGTCTGAATGAGG  350

seq1  AACCTCACTCTGTCAGCTGAGGGAGACAACCGAATGTGGGAGGCCAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCACTCTGTCAGCTGAGGGAGACAACCGAATGTGGGAGGCCAGCTG  400

seq1  AGGACACGGCTGGAGAGTTTTGCATAGACGCGTCTGAGAGATGGAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACGGCTGGAGAGTTTTGCATAGACGCGTCTGAGAGATGGAAAAAA  450

seq1  ACCTAATTTCCATTTACAGGAGAAACAAATATGAGGAGGAGAAGGAGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAATTTCCATTTACAGGAGAAACAAATATGAGGAGGAGAAGGAGTGA  500

seq1  AGTGTCCTTTGGTGGCTCAGTAGTTCATTCCAGAGCAGATGACAGGACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCTTTGGTGGCTCAGTAGTTCATTCCAGAGCAGATGACAGGACAG  550

seq1  TGTTTCACAAAACCATTTCATCTCTTTGGAGACATCCACAGGTCTTTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCACAAAACCATTTCATCTCTTTGGAGACATCCACAGGTCTTTACC  600

seq1  ACCTCAAGGTCACAAGGAGGAAAAAAAAATCCCTTTTATTTGGGAAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAAGGTCACAAGGAGGAAAAAAAAATCCCTTTTATTTGGGAAAAGA  650

seq1  AATAAATGTTCTTCTATCTGCTTCAGAGGTGGTAGGGAGTTTACTGTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGTTCTTCTATCTGCTTCAGAGGTGGTAGGGAGTTTACTGTGTT  700

seq1  CAGCTTTAGTCCATTTGTCTCTCTCTTTTTCCTTTTGGTTTCTAGGGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTAGTCCATTTGTCTCTCTCTTTTTCCTTTTGGTTTCTAGGGAGG  750

seq1  AAACAGATGCAAGAATGCAAATCCAGGGCTGGGGAGATAGTTCAGTGGG-  799
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAACAGATGCAAGAATGCAAATCCAGGGCTGGGGAGATAGTTCAGTGGGT  800

seq1  TGACAAGAGGCCCTACCATCTCAGCAATGGGAGGTAGAAACAAGCAGAGC  849
      |||||||||||| |||||||||||  ||||||||||||||||||||||||
seq2  TGACAAGAGGCCTTACCATCTCAGTCATGGGAGGTAGAAACAAGCAGAGC  850

seq1  CCTCAAGCTCACTGGGAAACCAGTCTATCTGAGTCAGTGAGTTCCCGGGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGCTCACTGGGAAACCAGTCTATCTGAGTCAGTGAGTTCCCGGGT  900

seq1  CAACAAGAGACCCTGATTCAAAATAAGATCAAGAGAGATTTAGGAAGGCA  949
      ||||||||||||||||||| |||||||||| |||||||||||||||||||
seq2  CAACAAGAGACCCTGATTC-AAATAAGATC-AGAGAGATTTAGGAAGGCA  948

seq1  CCCTCCCTAGGGTTTCCATTGCCGTGAAGAGACACCATGACCAGGGTGAC  999
      ||   |||||||||| |||||||||||||||||| ||||||   ||||||
seq2  CC--TCCTAGGGTTT-CATTGCCGTGAAGAGACATCATGAC--AGGTGAC  993

seq1  TCTTATAAAGAAAAACATTTCATTTGGGGCTGGCTTACAGTTTCATAGGT  1049
      || |||||   |||||||||||||| ||||| |||||||| |||||| ||
seq2  TC-TATAA--GAAAACATTTCATTT-GGGCT-GCTTACAG-TTCATA-GT  1036

seq1  TTAGTCCATTCTCATCATTGGTAG  1073
      ||||| |||   ||||||||||||
seq2  TTAGT-CAT--CCATCATTGGTAG  1057