BAC Information

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BAC

Clone NameB6Ng01-090F05
Chromosome8 (Build37)
Map Location 48,994,767 - 49,157,036
singlet/doubletdoublet
Overlap geneWwc2, LOC100040113
Upstream geneEnpp6, Stox2, 4930448N21Rik, D030016E14Rik, Rwdd4a, LOC384819, LOC667422, Ing2, LOC546058, Cdkn2aip, LOC100039801, Cldn22
Downstream geneDctd, Odz3, 2900073C17Rik, LOC100039866
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090F05.bB6Ng01-090F05.g
ACCDH902660DH902661
length989975
definitionDH902660|Mus musculus domesticus DNA, BAC clone: B6Ng01-090F05, 5' end.DH902661|Mus musculus domesticus DNA, BAC clone: B6Ng01-090F05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,994,767 - 48,995,760)(49,156,059 - 49,157,036)
sequence
gaattcaatggaaataacaacaaacaaaaacctccattctgaaaccccct
agaaactaacactttaactaaatggcaggttataccatgttcatggtatc
atcacagtcaaaaacctccattctgaaaccccctagaaagtaacacttta
actaaatggcaggttataccatgttcatggtatcatcacagtaatccctc
ctcccagtttgcctagaggcagttatcaaacgtccagcacgctcttctgg
aagaagctagcaaactacctctgaagaaaatatgcacatgatctaaagtc
gccactagacactggaaattgatcaagagtcggaggcctcttaccgtgac
tcgtgaatcactcacagtatgtggggcattctagctggagcacagagaaa
cctagctaaatggactgaagcagagtcacacggcgtacgaaacccgccag
agtgtgtctctccggcccccttaggatggtcacattgggtatgccaggcg
gttaatgtctgatcaagaggatgctgggaacaggactctgagcactgttg
gccattgggtatgaaaagcagttgaaattcctcagttagaaccagagctg
tgagccaggcattctacttctgggtgtttatctaagacaaccgaaaacag
gatctcaaagaaaactttcacacccatgtacctggcaacattattcacaa
taactaaaagctggaagcatcccttggtaagtgagcaacagaaaggcagt
gtgagaccattagcaagcttacaggagaaaggcatcctgccctgggctac
agatgacacaggggagtttttttttttttttcattttttattaggtatta
gctcatttacatttccaatgctataccaaaagtcccccaacccacccacc
cccactcccttacccacccactcccctctttgtgccctggcatcccctgt
actgggcatataagtttgcatgtccaatgcgcctctctt
gaattctgtcattgtatgaaatacttgaggcagacaacctgtgaggaaag
gctcatggctgtagaggtttggtttacagtcatatggccctgttgtcttt
gggtcaatagcaagatcacatgacgtggcattgtgtggtcatggtagcca
aaaagtgaaagagaggaagaagaggctggaggtccactgtttccatcaag
agtacctgtccgatgatatggtctcctttcactaggccctgcctcctggg
gttccacaacctctgaagagcaccacaggatggccaccaggccttcaggg
gacattcaatatccacactgtatcagaagctggacagtggtgtccttcta
gaggctggagctgacaggatatgatcatgggaagcagcgctccacagtgt
cgagggaaatgccagcacgtcactaacggtggccgtgtggcagaacctaa
tagcgaaggccagtaggtataattagaattaattcctgcaagattggaat
ggcagccaggaagatctaatgccgaggggtccaagcagatgcttcgtcga
cagcaccattcctaggagcctgaagtgagtaagggtttgctcggaatagt
cgatcaacaggaatcaagaagcgaaggctacagaatgccatcatgacacc
tagttaaagaaaaggccatgtggagttacactgaggaaaaccaacaacaa
caaaatcagagttcttccttccatcttttctacctcagaaagctaatcta
gacattttctaggcagcaggactcacaatcagggtgaccacactcagaat
cctgcagcatgcacacactttctgtaatttgtgaaccaacagaagcactg
gggaagggatattaaacatacatacattgtatgtgaacaggttagactgg
ggtaaagtctaataaactagaaagaaattaagatggtgtagtggggacag
cattgcagtacattggagctccata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_48994767_48995760
seq2: B6Ng01-090F05.b_47_1035

seq1  GAATTCAATGGAAATAACAACAAACAAAAACCTCCATTCTGAAACCCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGGAAATAACAACAAACAAAAACCTCCATTCTGAAACCCCCT  50

seq1  AGAAACTAACACTTTAACTAAATGGCAGGTTATACCATGTTCATGGTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTAACACTTTAACTAAATGGCAGGTTATACCATGTTCATGGTATC  100

seq1  ATCACAGTCAAAAACCTCCATTCTGAAACCCCCTAGAAAGTAACACTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGTCAAAAACCTCCATTCTGAAACCCCCTAGAAAGTAACACTTTA  150

seq1  ACTAAATGGCAGGTTATACCATGTTCATGGTATCATCACAGTAATCCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATGGCAGGTTATACCATGTTCATGGTATCATCACAGTAATCCCTC  200

seq1  CTCCCAGTTTGCCTAGAGGCAGTTATCAAACGTCCAGCACGCTCTTCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGTTTGCCTAGAGGCAGTTATCAAACGTCCAGCACGCTCTTCTGG  250

seq1  AAGAAGCTAGCAAACTACCTCTGAAGAAAATATGCACATGATCTAAAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCTAGCAAACTACCTCTGAAGAAAATATGCACATGATCTAAAGTC  300

seq1  GCCACTAGACACTGGAAATTGATCAAGAGTCGGAGGCCTCTTACCGTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTAGACACTGGAAATTGATCAAGAGTCGGAGGCCTCTTACCGTGAC  350

seq1  TCGTGAATCACTCACAGTATGTGGGGCATTCTAGCTGGAGCACAGAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGAATCACTCACAGTATGTGGGGCATTCTAGCTGGAGCACAGAGAAA  400

seq1  CCTAGCTAAATGGACTGAAGCAGAGTCACACGGCGTACGAAACCCGCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCTAAATGGACTGAAGCAGAGTCACACGGCGTACGAAACCCGCCAG  450

seq1  AGTGTGTCTCTCCGGCCCCCTTAGGATGGTCACATTGGGTATGCCAGGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTCTCTCCGGCCCCCTTAGGATGGTCACATTGGGTATGCCAGGCG  500

seq1  GTTAATGTCTGATCAAGAGGATGCTGGGAACAGGACTCTGAGCACTGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGTCTGATCAAGAGGATGCTGGGAACAGGACTCTGAGCACTGTTG  550

seq1  GCCATTGGGTATGAAAAGCAGTTGAAATTCCTCAGTTAGAACCAGAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTGGGTATGAAAAGCAGTTGAAATTCCTCAGTTAGAACCAGAGCTG  600

seq1  TGAGCCAGGCATTCTACTTCTGGGTGTTTATCTAAGACAACCGAAAACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCAGGCATTCTACTTCTGGGTGTTTATCTAAGACAACCGAAAACAG  650

seq1  GATCTCAAAGAAAACTTTCACACCCATGTACCTGGCAACATTATTCACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCAAAGAAAACTTTCACACCCATGTACCTGGCAACATTATTCACAA  700

seq1  TAACTAAAAGCTGGAAGCATCCCTTGGTAAGTGAGCAACAGAAAGGCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAAAGCTGGAAGCATCCCTTGGTAAGTGAGCAACAGAAAGGCAGT  750

seq1  GTGAGACCATTAGCAAGCTTACAGGAGAAGGGCATCCTGCCCTGGGCTAC  800
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTGAGACCATTAGCAAGCTTACAGGAGAAAGGCATCCTGCCCTGGGCTAC  800

seq1  AGATGACACAGGGGAGTTTTTTTTTTTTTTTCATTTTTTATTAGGTATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGATGACACAGGGGAGTTTTTTTTTTTTTTTCATTTTTTATTAGGTA-TT  849

seq1  AGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCA  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCA-ACCCACCCA  898

seq1  CCCCCACTCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCATTCCCC  950
      ||||||||||| ||||||||||||||||  |||  ||||||||| |||||
seq2  CCCCCACTCCCTTACCCACCCACTCCCCTCTTTGTGCCCTGGCA-TCCCC  947

seq1  TGTACTGGGGCATATAAAGTTTGCATGTCCAATGGGCCTCTCTT  994
      |||||| |||||||| |||||||||||||||||| |||||||||
seq2  TGTACT-GGGCATAT-AAGTTTGCATGTCCAATGCGCCTCTCTT  989

seq1: chr8_49156059_49157036
seq2: B6Ng01-090F05.g_71_1045 (reverse)

seq1  TATGGAGCT-CAATGTACTGCAATGGCTGTCACCACTACACCATCTTAAT  49
      ||||||||| |||||||||||||| |||||| ||||||||||||||||||
seq2  TATGGAGCTCCAATGTACTGCAAT-GCTGTCCCCACTACACCATCTTAAT  49

seq1  CTCCTTTCTAGTTTATTAGACTTTTACCCAGGTCTACACCTGTTCACATA  99
       | |||||||||||||||||| |||||||  ||||| |||||||||||||
seq2  -TTCTTTCTAGTTTATTAGAC-TTTACCCCAGTCTA-ACCTGTTCACATA  96

seq1  C-ATGTATTGTATTGTTTATATACCCTTCCCAGTTGCTCTGTTGGTTCAC  148
      | ||||| |||||  || |||| || | ||||||   |||||||||||||
seq2  CAATGTA-TGTATGTTTAATATCCCTTCCCCAGTGCTTCTGTTGGTTCAC  145

seq1  AAATTACAG-AAGTGTGTGCATGCTGCAGGATTCTGAGTGTGGTCACCCT  197
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACAGAAAGTGTGTGCATGCTGCAGGATTCTGAGTGTGGTCACCCT  195

seq1  GATTGTGAGTCCTGCTGCCTAGAAAATGTCTAGATTAGCTTTTCTGAGGT  247
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GATTGTGAGTCCTGCTGCCTAGAAAATGTCTAGATTAGC-TTTCTGAGGT  244

seq1  AGAAAAGATGGAAGGAAGAACTCTGATTTTGTTGTTGTTGGTTTTCCTCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGATGGAAGGAAGAACTCTGATTTTGTTGTTGTTGGTTTTCCTCA  294

seq1  GTGTAACTCCACATGGCCTTTTCTTTAACTAGGTGTCATGATGGCATTCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAACTCCACATGGCCTTTTCTTTAACTAGGTGTCATGATGGCATTCT  344

seq1  GTAGCCTTCGCTTCTTGATTCCTGTTGATCGACTATTCCGAGCAAACCCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCTTCGCTTCTTGATTCCTGTTGATCGACTATTCCGAGCAAACCCT  394

seq1  TACTCACTTCAGGCTCCTAGGAATGGTGCTGTCGACGAAGCATCTGCTTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCACTTCAGGCTCCTAGGAATGGTGCTGTCGACGAAGCATCTGCTTG  444

seq1  GACCCCTCGGCATTAGATCTTCCTGGCTGCCATTCCAATCTTGCAGGAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCTCGGCATTAGATCTTCCTGGCTGCCATTCCAATCTTGCAGGAAT  494

seq1  TAATTCTAATTATACCTACTGGCCTTCGCTATTAGGTTCTGCCACACGGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTAATTATACCTACTGGCCTTCGCTATTAGGTTCTGCCACACGGC  544

seq1  CACCGTTAGTGACGTGCTGGCATTTCCCTCGACACTGTGGAGCGCTGCTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGTTAGTGACGTGCTGGCATTTCCCTCGACACTGTGGAGCGCTGCTT  594

seq1  CCCATGATCATATCCTGTCAGCTCCAGCCTCTAGAAGGACACCACTGTCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGATCATATCCTGTCAGCTCCAGCCTCTAGAAGGACACCACTGTCC  644

seq1  AGCTTCTGATACAGTGTGGATATTGAATGTCCCCTGAAGGCCTGGTGGCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTGATACAGTGTGGATATTGAATGTCCCCTGAAGGCCTGGTGGCC  694

seq1  ATCCTGTGGTGCTCTTCAGAGGTTGTGGAACCCCAGGAGGCAGGGCCTAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTGGTGCTCTTCAGAGGTTGTGGAACCCCAGGAGGCAGGGCCTAG  744

seq1  TGAAAGGAGACCATATCATCGGACAGGTACTCTTGATGGAAACAGTGGAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGAGACCATATCATCGGACAGGTACTCTTGATGGAAACAGTGGAC  794

seq1  CTCCAGCCTCTTCTTCCTCTCTTTCACTTTTTGGCTACCATGACCACACA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCCTCTTCTTCCTCTCTTTCACTTTTTGGCTACCATGACCACACA  844

seq1  ATGCCACGTCATGTGATCTTGCTATTGACCCAAAGACAACAGGGCCATAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCACGTCATGTGATCTTGCTATTGACCCAAAGACAACAGGGCCATAT  894

seq1  GACTGTAAACCAAACCTCTACAGCCATGAGCCTTTCCTCACAGGTTGTCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTAAACCAAACCTCTACAGCCATGAGCCTTTCCTCACAGGTTGTCT  944

seq1  GCCTCAAGTATTTCATACAATGACAGAATTC  978
      |||||||||||||||||||||||||||||||
seq2  GCCTCAAGTATTTCATACAATGACAGAATTC  975