BAC Information

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BAC

Clone NameB6Ng01-090F21
Chromosome8 (Build37)
Map Location 119,506,959 - 119,699,836
singlet/doubletdoublet
Overlap geneGcsh, Pkd1l2, Bcmo1, Gan
Upstream geneLOC384868, LOC668233, Dynlrb2, Cdyl2, LOC100043053, 2310061C15Rik, 2610510J17Rik, BC060631, 1700030J22Rik
Downstream gene4933407C03Rik, Plcg2, 4632417N05Rik, Hsd17b2, Mphosph6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090F21.bB6Ng01-090F21.g
ACCDH902688DH902689
length1,069488
definitionDH902688|Mus musculus domesticus DNA, BAC clone: B6Ng01-090F21, 5' end.DH902689|Mus musculus domesticus DNA, BAC clone: B6Ng01-090F21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,698,775 - 119,699,836)(119,506,959 - 119,507,452)
sequence
gaattcagcatgtattacaacttagtagagggcttgggaaagggctgttg
gcaaatcgtctaccacggaagcatgagacctggaactgggtcctcagcac
ctacgcagaagccacgtgtggtcatcgtctgtgccctagtgatgtgggct
gagggtggaaacagctaacaggtggggctgagagactttgtcttaaaaat
attaaatactcaaaggaaacatatggaagtgtattggtgttttgcctgcc
cacttctcacagagaccggaagaaggtgaaggatcccctagaactagaga
tggttgtgagctgacatatgagtgctggaaattgaacctgggtactctta
gaagagtggtccatggtctcaacagctgaggcatatatatatgagttccc
tatacaatatatcttgaccaaacccaccctccaagccctctagaccccat
agtacatgctcctcctaccatcacgacctttctaaaaaaccaataaccac
tgagtccaatcagtgctgcctgcctcccaggcaacctaccaggggtcaca
tccctgaaagacatggcaccccttcaaccagtgaacaacaattgccaata
gctcctctgcttgggtgaagcctctctcatctcctctggcactgatgaca
gcttggtcctatacaggttcccagagccacagtgaggtcatgagggcacc
agtctgtcttgtccatagtcctcctccaaatcctccagctttttggactt
ctgccatgttccctgagccttgtgggaggcaatacagctggagagagcct
gtctgaaaaggggggagagggtgaatagtggcctcctagcctctagaagc
atgtgcgcgcgcgcacacacacacacacacacacacacacgtaaactacg
cgtgtgacatacaaacaggatacaatgggggacatctagtgtgtatctag
gagtttgggacagggatgaaacagcagcaacccttggcatccccagaaag
cataggaatgaagcctcatatgtgacaatgactccaagccgagagcagcc
acccccacctgagaagaga
actttgtagaccaggcttggccttgaactcagacatccacctgcctctgc
ctccctgcagagggggagtgggattaaaggtaagtgtgcacaccaccatg
accagctcaaataactttaattaaagtattttaaaataaaaccttggggc
cgaagagatgatggctaggcagttaagagcacctgcacataaatgttttt
gtttggttttttttttttggtttttcaagacaaggtttctctgtgtagct
ctggctgtcctggaactcactctgtagaccaggctggcctcgaactcaga
aatccccctgcctatgcctaccaagtgctgggattaattgtgcgccacca
ctgcccggcacatacatgttttttaaaaggcataccaaatataaactact
acagctaatattggtggaaagactgaaagccatgtatagtggtgcaggcc
tttaattccagcacttttgaggcagaaacaggaggatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_119698775_119699836
seq2: B6Ng01-090F21.b_50_1118 (reverse)

seq1  TCTC-TCTCA-GTGGGGGTGGCTGCT-TCTGCTTGGAGTCATTGTCAC-T  46
      |||| ||||| ||||||||||||||| || |||||||||||||||||| |
seq2  TCTCTTCTCAGGTGGGGGTGGCTGCTCTCGGCTTGGAGTCATTGTCACAT  50

seq1  ATGAGGCTTCATTCCTATGCTTTCT-GTGATGCC-AGGGTTGCTGCTGTT  94
      ||||||||||||||||||||||||| | |||||| |||||||||||||||
seq2  ATGAGGCTTCATTCCTATGCTTTCTGGGGATGCCAAGGGTTGCTGCTGTT  100

seq1  TCATCCCTGTCCCAAACTCCTAGATACACACTAGATGTCCCCCATTGTAT  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCTGTCCCAAACTCCTAGATACACACTAGATGTCCCCCATTGTAT  150

seq1  CCTGTTTGTATGTCACACGCGTAGTTTACGTGTGTGTGTGTGTGTGTGTG  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTGTATGTCACACGCGTAGTTTACGTGTGTGTGTGTGTGTGTGTG  200

seq1  TGTGTGCGCGCGCGCACATGCTTCTAGAGGCTAGGAGGCCACTATTCACC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCGCGCGCGCACATGCTTCTAGAGGCTAGGAGGCCACTATTCACC  250

seq1  CTCTCCCCCCTTTTCAGACAGGCTCTCTCCAGCTGTATTGCCTCCCACAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCCCCTTTTCAGACAGGCTCTCTCCAGCTGTATTGCCTCCCACAA  300

seq1  GGCTCAGGGAACATGGCAGAAGTCC-AAAAGCTGGAGGATTTGGAGGAGG  343
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGCTCAGGGAACATGGCAGAAGTCCAAAAAGCTGGAGGATTTGGAGGAGG  350

seq1  ACTATGGACAAGACAGACTGGTGCCCTCATGACCTCACTGTGGCTCTGGG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGGACAAGACAGACTGGTGCCCTCATGACCTCACTGTGGCTCTGGG  400

seq1  AACCTGTATAGGACCAAGCTGTCATCAGTGCCAGAGGAGATGAGAGAGGC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGTATAGGACCAAGCTGTCATCAGTGCCAGAGGAGATGAGAGAGGC  450

seq1  TTCACCCAAGCAGAGGAGCTATTGGCAATTGTTGTTCACTGGTTGAAGGG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCCAAGCAGAGGAGCTATTGGCAATTGTTGTTCACTGGTTGAAGGG  500

seq1  GTGCCATGTCTTTCAGGGATGTGACCCCTGGTAGGTTGCCTGGGAGGCAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCATGTCTTTCAGGGATGTGACCCCTGGTAGGTTGCCTGGGAGGCAG  550

seq1  GCAGCACTGATTGGACTCAGTGGTTATTGGTTTTTTAGAAAGGTCGTGAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCACTGATTGGACTCAGTGGTTATTGGTTTTTTAGAAAGGTCGTGAT  600

seq1  GGTAGGAGGAGCATGTACTATGGGGTCTAGAGGGCTTGGAGGGTGGGTTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGAGGAGCATGTACTATGGGGTCTAGAGGGCTTGGAGGGTGGGTTT  650

seq1  GGTCAAGATATATTGTATAGGGAACTCATATATATATGCCTCAGCTGTTG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAGATATATTGTATAGGGAACTCATATATATATGCCTCAGCTGTTG  700

seq1  AGACCATGGACCACTCTTCTAAGAGTACCCAGGTTCAATTTCCAGCACTC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATGGACCACTCTTCTAAGAGTACCCAGGTTCAATTTCCAGCACTC  750

seq1  ATATGTCAGCTCACAACCATCTCTAGTTCTAGGGGATCCTTCACCTTCTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCAGCTCACAACCATCTCTAGTTCTAGGGGATCCTTCACCTTCTT  800

seq1  CCGGTCTCTGTGAGAAGTGGGCAGGCAAAACACCAATACACTTCCATATG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTCTCTGTGAGAAGTGGGCAGGCAAAACACCAATACACTTCCATATG  850

seq1  TTTCCTTTGAGTATTTAATATTTTTAAGACAAAGTCTCTCAGCCCCACCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTGAGTATTTAATATTTTTAAGACAAAGTCTCTCAGCCCCACCT  900

seq1  GTTAGCTGTTTCCACCCTCAGCCCACATCACTAGGGCACAGACGATGACC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCTGTTTCCACCCTCAGCCCACATCACTAGGGCACAGACGATGACC  950

seq1  ACACGTGGCTTCTGCGTAGGTGCTGAGGACCCAGTTCCAGGTCTCATGCT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTGGCTTCTGCGTAGGTGCTGAGGACCCAGTTCCAGGTCTCATGCT  1000

seq1  TCCGTGGTAGACGATTTGCCAACAGCCCTTTCCCAAGCCCTCTACTAAGT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTGGTAGACGATTTGCCAACAGCCCTTTCCCAAGCCCTCTACTAAGT  1050

seq1  TGTAATACATGCTGAATTC  1062
      |||||||||||||||||||
seq2  TGTAATACATGCTGAATTC  1069

seq1: chr8_119506959_119507452
seq2: B6Ng01-090F21.g_69_562

seq1  GAATTCACTTTGTAGACCAGGCTTGGCCTTGAACTCAGACATCCACCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGACCAGGCTTGGCCTTGAACTCAGACATCCACCTGC  50

seq1  CTCTGCCTCCCTGCAGAGGGGGAGTGGGATTAAAGGTAAGTGTGCACACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCCCTGCAGAGGGGGAGTGGGATTAAAGGTAAGTGTGCACACC  100

seq1  ACCATGACCAGCTCAAATAACTTTAATTAAAGTATTTTAAAATAAAACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGACCAGCTCAAATAACTTTAATTAAAGTATTTTAAAATAAAACCT  150

seq1  TGGGGCCGAAGAGATGATGGCTAGGCAGTTAAGAGCACCTGCACATAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCCGAAGAGATGATGGCTAGGCAGTTAAGAGCACCTGCACATAAAT  200

seq1  GTTTTTGTTTGGTTTTTTTTTTTTGGTTTTTCAAGACAAGGTTTCTCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTTTGGTTTTTTTTTTTTGGTTTTTCAAGACAAGGTTTCTCTGT  250

seq1  GTAGCTCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAA  300

seq1  CTCAGAAATCCCCCTGCCTATGCCTACCAAGTGCTGGGATTAATTGTGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAATCCCCCTGCCTATGCCTACCAAGTGCTGGGATTAATTGTGCG  350

seq1  CCACCACTGCCCGGCACATACATGTTTTTTAAAAGGCATACCAAATATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACTGCCCGGCACATACATGTTTTTTAAAAGGCATACCAAATATAA  400

seq1  ACTACTAGAGCTAATAGTGGTGGAAAGACTGAAAGCCAGGTATAGTGGTG  450
      ||||||| |||||||| ||||||||||||||||||||| |||||||||||
seq2  ACTACTACAGCTAATATTGGTGGAAAGACTGAAAGCCATGTATAGTGGTG  450

seq1  CAGGCCTTTAATCCCAGCACTTAGGAGGCAGAAGCAGGAGGATC  494
      |||||||||||| |||||||||  ||||||||| ||||||||||
seq2  CAGGCCTTTAATTCCAGCACTTTTGAGGCAGAAACAGGAGGATC  494