BAC Information

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BAC

Clone NameB6Ng01-090L04
Chromosome8 (Build37)
Map Location 4,391,176 - 4,476,994
singlet/doubletdoublet
Overlap geneLOC664977, Ppia-ps8_36.1
Upstream geneArhgef18, Pex11c, 1700019B03Rik, Zfp358, Mcoln1, Pnpla6, C330021F23Rik, 2310057J16Rik, Xab2, Pcp2, Stxbp2, Retn, 1810033B17Rik, LOC664858, Trappc5, Fcer2a, Clec4g, Cd209a, LOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g, B130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25
Downstream geneLass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687, LOC436026, Slc10a2, LOC434275
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090L04.bB6Ng01-090L04.g
ACCDH902929DH902930
length1,1261,109
definitionDH902929|Mus musculus domesticus DNA, BAC clone: B6Ng01-090L04, 5' end.DH902930|Mus musculus domesticus DNA, BAC clone: B6Ng01-090L04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,475,863 - 4,476,994)(4,391,176 - 4,392,265)
sequence
gaattcctttctccattatattgagtcagttgagttgatcattttatctg
gttgtcctatgtttagttgtttgtttattttctgagacagtgtctcacca
tctggaactctatgtagatcagactggccttgatctcatagagatctgcc
tgtcacttgtgtcaagaattaaaccagagctttcaacaaactgaaaacaa
acaaacaaaaaactattccaataagctacatcctaggtctatatagattc
gctccgagttcgtttatactgctcttgtagggcctaagctcaggtatcag
cgccaataccagacagctcacaaccacttctaactccaagggtaagagaa
tctcacaactctaggctctatgggtacctacagagacacttaatttttga
tgatggtccttatatatggtaggaaaacccaccaccactgtgctataatc
ccaaccagcatatacataatcaaaaataaaaaaaaattaaaaatttttca
cagccagtttggtggggaggctttagcccacttaacatcagtggagttgg
ataccacccagggatgctatctcagaatccttgaccaagactggagaatt
cactttgaagatagcccgtttcctggcttgcccagttgatagcagtagga
ggccttgctacaggactgctggagcatatttacatggtagacatgtttta
catatcaaacagtccagaagaccaggtctgactagagtccttgaggtgaa
gttagagaaagtacatccctggaaacataactagacagttacacatggtt
gctggctccctccctgctctgcttcctgttccgtgtcagtgatcaatgtc
caccttttacacacagccaccaccatgatgtgtagcttcatcccaaattc
agagtaatttggccattcattcaaagactgaaccatttaaaaccatgagc
caggctggagaaatggctcaaggggttggggagcatcgactgctcttccg
aaggtcctgagttcgatcccagcaaccacatggtgctcacacattccata
tgagatctgacgtcctcttctggtgcatctgaagaagctacgtgtactta
gaatataatataataatcaaattaaa
gaattcagggccagcttggtctacataccatttctaggctagtcagggct
gcatagtgaggaaactctgggaaggaaggaaggaaggaaggaaggaagga
aggaaggaaggaaggatgggtttccttatggggctgtagagatggcttag
tacaattaaaatgtgtactgtgcttaccatgggccagcattcagttccta
gaacccatatcaggcagctcacaaccagctccaagggatctgataccttc
ttctgatctctagagtcacctgtattcatgtataatactcttccatactc
ataattttaagataacaaagtctttaaaaataaaaagtagtcgggcagtg
gtagcacacacctttaattccagcacttgggaggcagaggcaggcaaatt
tctgagttcgaggccagcctggtctacagagtgagttccaggacagccaa
ggctacacagagaaaccctgtctcaaaaaaaaaaataaaataaaaataaa
aataaaaataaaaataaaaataaaaaaagcttcttcctcggtgctgccta
cgaagtggctgccatctgttttgcggcatcgtggctgccctccggcctct
ggtgaagcccaagatcgtcaaaaagagaaccaagaagttcatcagacacc
agtcagaccgatatgtgaaaattaagtgaaactggcggaaacccagagac
atctacaacagggtgtggagaaggttcaagggccagatcctgatgcccaa
catcggttacgggagcaacaagaaaaccaagcacatactgctcagcggct
tccgcaagctcctggtccacagagtcaaggagctggaggtgctgctgatg
tgcaacaaatcttactgtgctgagattgcacataatgtgtcctctaagaa
ccgaaaagccattgtagaaagagcagcacagctggccatcagagtcacca
atcccagcgccaggctacgcgagagaaaatgaatagtggctggtgtgcat
gttttatgttaattaaatgacaaaactgcaaaaaaaaaaaaaagtaagaa
ggggtcttgtaagatgctcagctcctaaggggtggtgctaccaggtctga
catctgagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_4475863_4476994
seq2: B6Ng01-090L04.b_45_1170 (reverse)

seq1  TTTATTTTGATTTATTTATTATTATATCTAAGTACACTGTAGCTGTCTTC  50
      |||| |||||||  | ||||| ||| ||||||||||| |||||| |||||
seq2  TTTAATTTGATTATTATATTA-TAT-TCTAAGTACAC-GTAGCT-TCTTC  46

seq1  AGATGCACCAGAAGAGGACGTCAGATCTCATTATGGATGGTTGTGAGCCA  100
      |||||||||||||||||||||||||||||| ||||||  | |||||| ||
seq2  AGATGCACCAGAAGAGGACGTCAGATCTCA-TATGGAATG-TGTGAG-CA  93

seq1  CCATGTGGTTGCTGGGATTCGAACTCAGGACCTTCGGAAGAGCAGTCGAT  150
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCATGTGGTTGCTGGGA-TCGAACTCAGGACCTTCGGAAGAGCAGTCGAT  142

seq1  GCT-CCCAACCCC-TGAGCCATTTCTCCAGCCTGGCTCATGGTTTTAAAT  198
      ||| ||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GCTCCCCAACCCCTTGAGCCATTTCTCCAGCCTGGCTCATGGTTTTAAAT  192

seq1  GGTTCAGTCTTTGATTGAATGGCCACATTACTCTGAATTTGGGATGAAGC  248
      |||||||||||||| |||||||||| ||||||||||||||||||||||||
seq2  GGTTCAGTCTTTGAATGAATGGCCAAATTACTCTGAATTTGGGATGAAGC  242

seq1  TACACATCATGGTGGTGGCTGTGTGT-AAAGGTGGACATTGATCACCTGA  297
      |||||||||||||||||||||||||| |||||||||||||||||| ||||
seq2  TACACATCATGGTGGTGGCTGTGTGTAAAAGGTGGACATTGATCA-CTGA  291

seq1  CACGGAACAGGAAGCAGAGCAGGGAGGGAGCCAGCAACCATGTGTAACTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGAACAGGAAGCAGAGCAGGGAGGGAGCCAGCAACCATGTGTAACTG  341

seq1  TCTAGTTATGTTTCCAGGGATGTACTTTCTCTAACTTCACCTCAAGGACT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTTATGTTTCCAGGGATGTACTTTCTCTAACTTCACCTCAAGGACT  391

seq1  CTAGTCAGACCTGGTCTTCTGGACTGTTTGATATGTAAAACATGTCTACC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCAGACCTGGTCTTCTGGACTGTTTGATATGTAAAACATGTCTACC  441

seq1  ATGTAAATATGCTCCAGCAGTCCTGTAGCAAGGCCTCCTACTGCTATCAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAATATGCTCCAGCAGTCCTGTAGCAAGGCCTCCTACTGCTATCAA  491

seq1  CTGGGCAAGCCAGGAAACGGGCTATCTTCAAAGTGAATTCTCCAGTCTTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAAGCCAGGAAACGGGCTATCTTCAAAGTGAATTCTCCAGTCTTG  541

seq1  GTCAAGGATTCTGAGATAGCATCCCTGGGTGGTATCCAACTCCACTGATG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGATTCTGAGATAGCATCCCTGGGTGGTATCCAACTCCACTGATG  591

seq1  TTAAGTGGGCTAAAGCCTCCCCACCAAACTGGCTGTGAAAAATTTTTAAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGGGCTAAAGCCTCCCCACCAAACTGGCTGTGAAAAATTTTTAAT  641

seq1  TTTTTTTTATTTTTGATTATGTATATGCTGGTTGGGATTATAGCACAGTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTATTTTTGATTATGTATATGCTGGTTGGGATTATAGCACAGTG  691

seq1  GTGGTGGGTTTTCCTACCATATATAAGGACCATCATCAAAAATTAAGTGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGGTTTTCCTACCATATATAAGGACCATCATCAAAAATTAAGTGT  741

seq1  CTCTGTAGGTACCCATAGAGCCTAGAGTTGTGAGATTCTCTTACCCTTGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAGGTACCCATAGAGCCTAGAGTTGTGAGATTCTCTTACCCTTGG  791

seq1  AGTTAGAAGTGGTTGTGAGCTGTCTGGTATTGGCGCTGATACCTGAGCTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAAGTGGTTGTGAGCTGTCTGGTATTGGCGCTGATACCTGAGCTT  841

seq1  AGGCCCTACAAGAGCAGTATAAACGAACTCGGAGCGAATCTATATAGACC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTACAAGAGCAGTATAAACGAACTCGGAGCGAATCTATATAGACC  891

seq1  TAGGATGTAGCTTATTGGAATAGTTTTTTGTTTGTTTGTTTTCAGTTTGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATGTAGCTTATTGGAATAGTTTTTTGTTTGTTTGTTTTCAGTTTGT  941

seq1  TGAAAGCTCTGGTTTAATTCTTGACACAAGTGACAGGCAGATCTCTATGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCTCTGGTTTAATTCTTGACACAAGTGACAGGCAGATCTCTATGA  991

seq1  GATCAAGGCCAGTCTGATCTACATAGAGTTCCAGATGGTGAGACACTGTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAGGCCAGTCTGATCTACATAGAGTTCCAGATGGTGAGACACTGTC  1041

seq1  TCAGAAAATAAACAAACAACTAAACATAGGACAACCAGATAAAATGATCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAATAAACAAACAACTAAACATAGGACAACCAGATAAAATGATCA  1091

seq1  ACTCAACTGACTCAATATAATGGAGAAAGGAATTC  1132
      |||||||||||||||||||||||||||||||||||
seq2  ACTCAACTGACTCAATATAATGGAGAAAGGAATTC  1126

seq1: chr8_4391176_4392265
seq2: B6Ng01-090L04.g_98_1176

seq1  TTTCTAGGCTAGTCAGGGCTGCATAGTGAGGAAACTCTGGGAAGGAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGGCTAGTCAGGGCTGCATAGTGAGGAAACTCTGGGAAGGAAGGA  50

seq1  AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGATGGGTTTCCTTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGATGGGTTTCCTTATG  100

seq1  GGGCTGTAGAGATGGCTTAGTACAATTAAAATGTGTACTGTGCTTACCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTAGAGATGGCTTAGTACAATTAAAATGTGTACTGTGCTTACCAT  150

seq1  GGGCCAGCATTCAGTTCCTAGAACCCATATCAGGCAGCTCACAACCAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGCATTCAGTTCCTAGAACCCATATCAGGCAGCTCACAACCAGCT  200

seq1  CCAAGGGATCTGATACCTTCTTCTGATCTCTAGAGTCACCTGTATTCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGGATCTGATACCTTCTTCTGATCTCTAGAGTCACCTGTATTCATG  250

seq1  TATAATACTCTTCCATACTCATAATTTTAAGATAACAAAGTCTTTAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATACTCTTCCATACTCATAATTTTAAGATAACAAAGTCTTTAAAAA  300

seq1  TAAAAAGTAGTCGGGCAGTGGTAGCACACACCTTTAATTCCAGCACTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGTAGTCGGGCAGTGGTAGCACACACCTTTAATTCCAGCACTTGG  350

seq1  GAGGCAGAGGCAGGCAAATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGGCAGGCAAATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGA  400

seq1  GTGAGTTCCAGGACAGCCAAGGCTACACAGAGAAACCCTGTCTCAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTCCAGGACAGCCAAGGCTACACAGAGAAACCCTGTCTCAAAAAA  450

seq1  AAAAATAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAAAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAAAAGC  500

seq1  TTCTTCCTCGGTGCTGCCTACGAAGTGGCTGCCATCTGTTTTGCGGCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTCGGTGCTGCCTACGAAGTGGCTGCCATCTGTTTTGCGGCATC  550

seq1  GTGGCTGCCCTCCGGCCTCTGGTGAAGCCCAAGATCGTCAAAAAGAGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGCCCTCCGGCCTCTGGTGAAGCCCAAGATCGTCAAAAAGAGAAC  600

seq1  CAAGAAGTTCATCAGACACCAGTCAGACCGATATGTGAAAATTAAGTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGTTCATCAGACACCAGTCAGACCGATATGTGAAAATTAAGTGAA  650

seq1  ACTGGCGGAAACCCAGAGACATCTACAACAGGGTGTGGAGAAGGTTCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCGGAAACCCAGAGACATCTACAACAGGGTGTGGAGAAGGTTCAAG  700

seq1  GGCCAGATCCTGATGCCCAACATCGGTTACGGGAGCAACAAGAAAACCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGATCCTGATGCCCAACATCGGTTACGGGAGCAACAAGAAAACCAA  750

seq1  GCACATACTGCTCAGCGGCTTCCGCAAGCTCCTGGTCCACAGAGTCAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATACTGCTCAGCGGCTTCCGCAAGCTCCTGGTCCACAGAGTCAAGG  800

seq1  AGCTGGAGGTGCTGCTGATGTGCAACAAATCTTACTGTGCTGAGATTGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAGGTGCTGCTGATGTGCAACAAATCTTACTGTGCTGAGATTGCA  850

seq1  CATAATGTGTCCTCTAAGAACCGAAAAGCCATTGTAGAAAGAGCAGCACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGTGTCCTCTAAGAACCGAAAAGCCATTGTAGAAAGAGCAGCACA  900

seq1  GCTGGCCATCAGAGTCACCAATCCCAGCGCCAGGCTACGCAGAGAAGAAA  950
      |||||||||||||||||||||||||||||||||||||||| ||| |||||
seq2  GCTGGCCATCAGAGTCACCAATCCCAGCGCCAGGCTACGC-GAG-AGAAA  948

seq1  ATGAATAGGTGGCTGGTGTGCATGTTTTATGTTTAAATAAAATGACAAAA  1000
      ||||||| |||||||||||||||||||||||||  ||| ||||||| |||
seq2  ATGAATA-GTGGCTGGTGTGCATGTTTTATGTT--AATTAAATGAC-AAA  994

seq1  ACTGCCAAAAAAAAAAAAAAAGTAAGAAGGGGTCTTGGTAAGATGGCTCA  1050
      |||||  ||||||||||||||||||||||||||||| ||||||| |||||
seq2  ACTGC--AAAAAAAAAAAAAAGTAAGAAGGGGTCTT-GTAAGAT-GCTCA  1040

seq1  GCTCATAAGGGTGTGTGCTACCAAGTCTGACCATCTGAGT  1090
      |||| ||||||   ||||||||| |||||| |||||||||
seq2  GCTCCTAAGGGGTGGTGCTACCAGGTCTGA-CATCTGAGT  1079