BAC Information

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BAC

Clone NameB6Ng01-090P21
Chromosome8 (Build37)
Map Location 63,636,119 - 63,789,462
singlet/doubletdoublet
Overlap geneSh3rf1
Upstream geneAadat, Mfap3l, LOC100040679, 2700029M09Rik, Clcn3, B230317F23Rik, Nek1
Downstream geneEG664975, Cbr4, Palld, LOC100040872, BC013672, Anxa10, LOC100040775
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090P21.bB6Ng01-090P21.g
ACCDH903145DH903146
length1,1611,087
definitionDH903145|Mus musculus domesticus DNA, BAC clone: B6Ng01-090P21, 5' end.DH903146|Mus musculus domesticus DNA, BAC clone: B6Ng01-090P21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,636,119 - 63,637,305)(63,788,356 - 63,789,462)
sequence
gaattcatttgccttaattatctcttaaaagtcccaactgtcaatgtcac
agtcagactttacaccttaagacaaataccaacatgaattttagtgagaa
cattcaaatcacaacagtaacaagttaaatgtgtttataaataagtctat
agatatatggaaatatgaattctggttttctttcttagcaaagaataaga
ttgttaagtaaatacactaaatcagtgagtgatgatagccaatttccccc
gaattcttttttcctgtacattctaaatattgtatagtgagatgttttat
tcctatttataaatagtatatagaatcttttcctgatggagatataaatc
accctgtcctctccgtctgaggcaatctaattacctaaagtgctgattta
ccttaaagccggcagatgggatccttaggagtctgttccttcacagatta
aaggaaggcttggattagccaagagggtatatttaaagagccccggaaag
gtccaagagataccactgtctataaaaggcacctggtgatggtaagaacg
ttctgtgtcgtgactagatccaggtcaatgccctgactctgaaattgtac
atcggtatcacaaggctggagaagacacagggctctcttacaactatata
tgaatcgttcactatcttcaaatagagctttaatttttagtttatattac
tttcagtgctggagatcaaacccgggacttcacctaagcagtgtaagtat
tctgccactaaactacattcccagctttcaagtttaatttggtggccttc
tacgtgtttatgtttctacccaaaggcttgggctgctctcagcctccgtt
aggggaacttgctttttgcaggaggcagcatgcagggcagaggtaagtaa
gtgttcaaacagatgagactaagaatgagccctcagtagagaaaggaccc
aaggagctgatggggtttgcagccttataggagacaacatatgtactaac
agtacctcccagagttcctgggactaaacaccatcaagaaacacatgtgg
gactcatgtctctagctattatgtagcagaggatggtctagtgacatcat
gggaggagagtccttcatctggagttctatgcccatatagggaatgccag
ccaggatggga
gaattcatttcagaagcaaggggaaactaatacccaccgccagccaccat
cctcatccggcatgtctgaggcacacagacatatggaagaaatctagcct
tgtacctttgaggacctgcccaccgtcttcaggttatacgagggtaactt
tagaacggcgcacagcttgacaacagagaaagaggctcccgaaagctgga
caaagacaacagcgaacaaactttgaacaacttaagctgtactgtttact
ttagcatcctctttgaactccatgtgcttccaagggaaacaaaatttact
ttgaataaattttacagtcttctacttgaaacagctggttggagttttca
aaaagcatcttgtcagaattatgcatttttttcttcttaagacatattcc
acccactaagtcataccagaagccttggtaatcacggaaagtagcttcgt
gaacacgaatccctccgatgtccagcctgcaataagccttttagagaaag
gaccaaagacaccaagtgccttctacgtaattctgaagaacctacacagg
tcaccgcatctccacagcacgggaggggtgagcagggaccgtagttaggg
atgaacaaagccaggccatccccaaacagcagattcagctaagacgcagc
gggagctttaaccaactccttccaatctccagcagaatgtggcacaatct
ggaaagagatttcccatgaagaatatagaacagaagaggaaaagaaaggc
ggggagagggggaacaaaggatttaaaaaaaaaaaaaagttaaacctgaa
tacctacagagaaaaatgtgcccaacccggagtctgaggctaatgtccca
gtctggtttatacgaatacggagcctccactcagtcaattgttgacatta
cgtaattagccggttacataataacactgcagcttaccaactgcacactg
gagattttaactactttggtgattgctgtcacagctaacatctgtgctgc
tctcaagcaaaagtgagagaagaaaagaaggtgatgctagtatgcgacgt
catgagcagacaagaaggtctgccgccgggaatgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_63636119_63637305
seq2: B6Ng01-090P21.b_50_1210

seq1  GAATTCATTTGCCTTAATTATCTCTTAAAAGTCCCAACTGTCAATGTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGCCTTAATTATCTCTTAAAAGTCCCAACTGTCAATGTCAC  50

seq1  AGTCAGACTTTACACCTTAAGACAAATACCAACATGAATTTTAGTGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGACTTTACACCTTAAGACAAATACCAACATGAATTTTAGTGAGAA  100

seq1  CATTCAAATCACAACAGTAACAAGTTAAATGTGTTTATAAATAAGTCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAATCACAACAGTAACAAGTTAAATGTGTTTATAAATAAGTCTAT  150

seq1  AGATATATGGAAATATGAATTCTGGTTTTCTTTCTTAGCAAAGAATAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATATGGAAATATGAATTCTGGTTTTCTTTCTTAGCAAAGAATAAGA  200

seq1  TTGTTAAGTAAATACACTAAATCAGTGAGTGATGATAGCCAATTTCCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAGTAAATACACTAAATCAGTGAGTGATGATAGCCAATTTCCCCC  250

seq1  GAATTCTTTTTTCCTGTACATTCTAAATATTGTATAGTGAGATGTTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTCCTGTACATTCTAAATATTGTATAGTGAGATGTTTTAT  300

seq1  TCCTATTTATAAATAGTATATAGAATCTTTTCCTGATGGAGATATAAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTTATAAATAGTATATAGAATCTTTTCCTGATGGAGATATAAATC  350

seq1  ACCCTGTCCTCTCCGTCTGAGGCAATCTAATTACCTAAAGTGCTGATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTCCTCTCCGTCTGAGGCAATCTAATTACCTAAAGTGCTGATTTA  400

seq1  CCTTAAAGCCGGCAGATGGGATCCTTAGGAGTCTGTTCCTTCACAGATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAAGCCGGCAGATGGGATCCTTAGGAGTCTGTTCCTTCACAGATTA  450

seq1  AAGGAAGGCTTGGATTAGCCAAGAGGGTATATTTAAAGAGCCCCGGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGCTTGGATTAGCCAAGAGGGTATATTTAAAGAGCCCCGGAAAG  500

seq1  GTCCAAGAGATACCACTGTCTATAAAAGGCACCTGGTGATGGTAAGAACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAGAGATACCACTGTCTATAAAAGGCACCTGGTGATGGTAAGAACG  550

seq1  TTCTGTGTCGTGACTAGATCCAGGTCAATGCCCTGACTCTGAAATTGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGTCGTGACTAGATCCAGGTCAATGCCCTGACTCTGAAATTGTAC  600

seq1  ATCGGTATCACAAGGCTGGAGAAGACACAGGGCTCTCTTACAACTATATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGTATCACAAGGCTGGAGAAGACACAGGGCTCTCTTACAACTATATA  650

seq1  TGAATCGTTCACTATCTTCAAATAGAGCTTTAATTTTTAGTTTATATTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCGTTCACTATCTTCAAATAGAGCTTTAATTTTTAGTTTATATTAC  700

seq1  TTTCAGTGCTGGAGATCAAACCCGGGACTTCACCTAAGCAGTGTAAGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTGCTGGAGATCAAACCCGGGACTTCACCTAAGCAGTGTAAGTAT  750

seq1  TCTGCCACTAAACTACATTCCCAGCTTTCAAGTTTAATTTGGTGGCCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCACTAAACTACATTCCCAGCTTTCAAGTTTAATTTGGTGGCCTTC  800

seq1  TACGTGTTTATGTTTCTACCCAAAGGCTTGGGCTGCTCTCAGCCTCCGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTGTTTATGTTTCTACCCAAAGGCTTGGGCTGCTCTCAGCCTCCGTT  850

seq1  AGGGGAACTTGCTTTTTGCAGGAGGCAGCAGGCAGGGCAGAGGTAAGTAA  900
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGGGGAACTTGCTTTTTGCAGGAGGCAGCATGCAGGGCAGAGGTAAGTAA  900

seq1  GTGTTCAAACAGATGAGACTAAGAATGAGCCCTCAGTAGAGAAAGGACCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCAAACAGATGAGACTAAGAATGAGCCCTCAGTAGAGAAAGGACCC  950

seq1  AAGGAGCTGAAGGGGTTTGCAGCCTTATAGGAGGAACAACAATATGTACT  1000
      |||||||||| ||||||||||||||||||||||  ||||| |||||||||
seq2  AAGGAGCTGATGGGGTTTGCAGCCTTATAGGAG--ACAAC-ATATGTACT  997

seq1  AACCAGTACCCCCCAGAGTTCCCTGGGACTAAACCACCAATCAAAGAAAA  1050
      || ||||||| ||||||||| |||||||||||| |||| |||||   |||
seq2  AA-CAGTACCTCCCAGAGTT-CCTGGGACTAAA-CACC-ATCAA--GAAA  1041

seq1  CACATGGTGGGACTCATGTCTCTAGCTATATATGTAGCAGAGGATGGTCT  1100
      ||||| ||||||||||||||||||||||| ||||||||||||||||||||
seq2  CACAT-GTGGGACTCATGTCTCTAGCTAT-TATGTAGCAGAGGATGGTCT  1089

seq1  AGTTGACCATCAATGGGAGGAGAGGCCCTTCATCCTGTGAAGGTTCTATG  1150
      || ||| |||| ||||||||||| | ||||||||   || | ||||||||
seq2  AG-TGA-CATC-ATGGGAGGAGA-GTCCTTCATC---TGGA-GTTCTATG  1131

seq1  CCCCAATATAGGGGAATGCCAGGGCCAGGAAGTGGGA  1187
      |||  ||||| ||||||||||  |||||||  |||||
seq2  CCC--ATATA-GGGAATGCCA--GCCAGGA--TGGGA  1161

seq1: chr8_63788356_63789462
seq2: B6Ng01-090P21.g_70_1156 (reverse)

seq1  CCCCATTCCCCGGCGGGCCAGACCCTTCTTGTCTTGCTCCATGGCCGTCT  50
      ||||||| ||||||||  |||| |||||||||| |||| ||| | |||| 
seq2  CCCCATT-CCCGGCGG--CAGA-CCTTCTTGTC-TGCT-CAT-GACGTC-  42

seq1  GCATACTAAGCATTCACC-TCTTTTCTTCTCTCACTTTTGCTTTGAAGAG  99
      ||||||| |||| ||||| ||||||||||||||||||||||||   ||||
seq2  GCATACT-AGCA-TCACCTTCTTTTCTTCTCTCACTTTTGCTT--GAGAG  88

seq1  CAGCACAGATG-TAGCTGGTGACAGGCAATTCACCAAAGTAGTTAAAATT  148
      ||||||||||| ||||| |||||| |||| ||||||||||||||||||| 
seq2  CAGCACAGATGTTAGCT-GTGACA-GCAA-TCACCAAAGTAGTTAAAAT-  134

seq1  CCTCCAGTTGTGGCAGTTTGGTAAGCTGCAGTGTTATTATTGTAACCGGC  198
       |||||| ||| |||| |||||||||||||||||||||| ||||||||||
seq2  -CTCCAG-TGT-GCAG-TTGGTAAGCTGCAGTGTTATTA-TGTAACCGGC  179

seq1  TAATTACGTAATGTCAACAATTGACTGAGGTGGAGGCTCCGTATTCGTAT  248
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAATTACGTAATGTCAACAATTGACTGA-GTGGAGGCTCCGTATTCGTAT  228

seq1  AAACCAGACTGGGGACATTAGCCTCAGACTCCGGGTTGGGCACATTTTTC  298
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGACT-GGGACATTAGCCTCAGACTCCGGGTTGGGCACATTTTTC  277

seq1  TCTGTAGGTATTCAGGTTTAAC-TTTTTTTTTTTTTAAATCCTTTGTTCC  347
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCTGTAGGTATTCAGGTTTAACTTTTTTTTTTTTTTAAATCCTTTGTTCC  327

seq1  CCCTCTCCCCGCCTTTCTTTTCCTCTTCTGTTCTATATTCTTCATGGGAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCCCCGCCTTTCTTTTCCTCTTCTGTTCTATATTCTTCATGGGAA  377

seq1  ATCTCTTTCCAGATTGTGCCACATTCTGCTGGAGATTGGAAGGAGTTGGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTTCCAGATTGTGCCACATTCTGCTGGAGATTGGAAGGAGTTGGT  427

seq1  TAAAGCTCCCGCTGCGTCTTAGCTGAATCTGCTGTTTGGGGATGGCCTGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTCCCGCTGCGTCTTAGCTGAATCTGCTGTTTGGGGATGGCCTGG  477

seq1  CTTTGTTCATCCCTAACTACGGTCCCTGCTCACCCCTCCCGTGCTGTGGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTCATCCCTAACTACGGTCCCTGCTCACCCCTCCCGTGCTGTGGA  527

seq1  GATGCGGTGACCTGTGTAGGTTCTTCAGAATTACGTAGAAGGCACTTGGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCGGTGACCTGTGTAGGTTCTTCAGAATTACGTAGAAGGCACTTGGT  577

seq1  GTCTTTGGTCCTTTCTCTAAAAGGCTTATTGCAGGCTGGACATCGGAGGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGGTCCTTTCTCTAAAAGGCTTATTGCAGGCTGGACATCGGAGGG  627

seq1  ATTCGTGTTCACGAAGCTACTTTCCGTGATTACCAAGGCTTCTGGTATGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGTGTTCACGAAGCTACTTTCCGTGATTACCAAGGCTTCTGGTATGA  677

seq1  CTTAGTGGGTGGAATATGTCTTAAGAAGAAAAAAATGCATAATTCTGACA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTGGGTGGAATATGTCTTAAGAAGAAAAAAATGCATAATTCTGACA  727

seq1  AGATGCTTTTTGAAAACTCCAACCAGCTGTTTCAAGTAGAAGACTGTAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTTTTTGAAAACTCCAACCAGCTGTTTCAAGTAGAAGACTGTAAA  777

seq1  ATTTATTCAAAGTAAATTTTGTTTCCCTTGGAAGCACATGGAGTTCAAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTCAAAGTAAATTTTGTTTCCCTTGGAAGCACATGGAGTTCAAAG  827

seq1  AGGATGCTAAAGTAAACAGTACAGCTTAAGTTGTTCAAAGTTTGTTCGCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGCTAAAGTAAACAGTACAGCTTAAGTTGTTCAAAGTTTGTTCGCT  877

seq1  GTTGTCTTTGTCCAGCTTTCGGGAGCCTCTTTCTCTGTTGTCAAGCTGTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTTTGTCCAGCTTTCGGGAGCCTCTTTCTCTGTTGTCAAGCTGTG  927

seq1  CGCCGTTCTAAAGTTACCCTCGTATAACCTGAAGACGGTGGGCAGGTCCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCGTTCTAAAGTTACCCTCGTATAACCTGAAGACGGTGGGCAGGTCCT  977

seq1  CAAAGGTACAAGGCTAGATTTCTTCCATATGTCTGTGTGCCTCAGACATG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTACAAGGCTAGATTTCTTCCATATGTCTGTGTGCCTCAGACATG  1027

seq1  CCGGATGAGGATGGTGGCTGGCGGTGGGTATTAGTTTCCCCTTGCTTCTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGATGAGGATGGTGGCTGGCGGTGGGTATTAGTTTCCCCTTGCTTCTG  1077

seq1  AAATGAATTC  1107
      ||||||||||
seq2  AAATGAATTC  1087