BAC Information

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BAC

Clone NameB6Ng01-092D07
Chromosome8 (Build37)
Map Location 30,004,973 - 30,137,774
singlet/doubletdoublet
Overlap geneUnc5d
Upstream geneEG666422, LOC666430, EG666446, LOC100042598
Downstream geneLOC100041237
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092D07.bB6Ng01-092D07.g
ACCDH904030DH904031
length5681,097
definitionDH904030|Mus musculus domesticus DNA, BAC clone: B6Ng01-092D07, 5' end.DH904031|Mus musculus domesticus DNA, BAC clone: B6Ng01-092D07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,004,973 - 30,005,546)(30,136,667 - 30,137,774)
sequence
ctcaggaattatcctgggattcttcagggaaaaaaagagaaaggaagggg
tggggaagatagctcagttgataaaatagttgctatgtgagcatcaggat
ctgagttcaatgcccagaacccacctaaaagcacatttgtaatttacttg
ggaggcagcaacaggcagttttctggctagccggccactgagctccagag
tcttttgagaaaccctgtctcaagaaggaaggtagatacctgcttaggaa
gaatacatagttgactaatggcctctacatgcatgcacaagcacaatgaa
ctcatttgtgtgtgtctgtgtgtgtgcatgtgcacacacaaaataaggaa
ggaaagaaatcatgaggatcatgaaaggaagtgagaattattttagggtc
ttagcagtttattgatcttgttctgtgggaggacgggttaggtcatttcc
tctaggaagtagttctatggaaactggatcaatgtatttgtgcttcaaag
aaaatcgacatgtaatcttggcatgtcttctaccattttgtgtgtgtgtg
tgtgtgtgtgtgtgtgta
gaattcagttgctaatatgcagaactgcctgcataatgtaacatgacaaa
ggctgctatatcttcagcttcctcacagactttaaatagcatacacacag
agaattattttctttttaacttcaaccaaaactattacaagtttcattca
aatgaaaatgaggatatagtttggcattacttaaaataatggaggagaaa
ataagccatttacttaataagaatctatctacctatcatttatttatcta
tatataactatatatctatatacatatacatataattatacacacatgtg
tgtatatgtatatataatatatatattatatatatacatattactttaga
gaaataatcccacttaattatcacaccaagcttatgagttacatgacatt
ttctgttttataatttggaaaatatgattgaaatagattatgcgaatagt
tattctctaaagcccatagctctattagtctgtcatattgccatccacgt
tgttctcatgtgtttttctgtgacaagccttggaaacaatgctcatttga
taattttggaggttgaaaggtcaaagatgcagtcctggcttaggtgagaa
catcattagctatgtcacactatggtggatggcttgagtagaagcctgct
agagaaagaaatcgtgtacttttacaaggcatgaactctgcagaagttct
tcaccttcagagctctgctgcttcccatgtaactaccttgggatccatat
ttaaaatacaccagccttttaatcaaaccaaagccttgtcatagtgataa
gagtgaccacatagatgattgttttttttagatttaataactttatgtgt
atagctgttttgcctccacgtatgtttgtgtataatatactcagaggttt
cccaggaactggattatagatggttataaaccatccaggaggtagtggga
cctgaactagtttactgcagagcagtaagtattcttagctgcggagcttc
tctgcaacccctcctaatagatgacattcttatttagacccttcaccact
atttcaaagaagaggacaccatgctggagtggctggttcattacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_30004973_30005546
seq2: B6Ng01-092D07.b_47_620

seq1  GAATTCCTCAGGAATTATCCTGGGATTCTTCAGGGAAAAAAAGAGAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAGGAATTATCCTGGGATTCTTCAGGGAAAAAAAGAGAAAGG  50

seq1  AAGGGGTGGGGAAGATAGCTCAGTTGATAAAATAGTTGCTATGTGAGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGTGGGGAAGATAGCTCAGTTGATAAAATAGTTGCTATGTGAGCAT  100

seq1  CAGGATCTGAGTTCAATGCCCAGAACCCACCTAAAAGCACATTTGTAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATCTGAGTTCAATGCCCAGAACCCACCTAAAAGCACATTTGTAATT  150

seq1  TACTTGGGAGGCAGCAACAGGCAGTTTTCTGGCTAGCCGGCCACTGAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGGGAGGCAGCAACAGGCAGTTTTCTGGCTAGCCGGCCACTGAGCT  200

seq1  CCAGAGTCTTTTGAGAAACCCTGTCTCAAGAAGGAAGGTAGATACCTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTCTTTTGAGAAACCCTGTCTCAAGAAGGAAGGTAGATACCTGCT  250

seq1  TAGGAAGAATACATAGTTGACTAATGGCCTCTACATGCATGCACAAGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGAATACATAGTTGACTAATGGCCTCTACATGCATGCACAAGCAC  300

seq1  AATGAACTCATTTGTGTGTGTCTGTGTGTGTGCATGTGCACACACAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACTCATTTGTGTGTGTCTGTGTGTGTGCATGTGCACACACAAAAT  350

seq1  AAGGAAGGAAAGAAATCATGAGGATCATGAAAGGAAGTGAGAATTATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAAAGAAATCATGAGGATCATGAAAGGAAGTGAGAATTATTTT  400

seq1  AGGGTCTTAGCAGTTTATTGATCTTGTTCTGTGGGAGGACGGGTTAGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTTAGCAGTTTATTGATCTTGTTCTGTGGGAGGACGGGTTAGGTC  450

seq1  ATTTCCTCTAGGAAGTAGTTCTATGGAAACTGGATCAATGTATTTGTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTCTAGGAAGTAGTTCTATGGAAACTGGATCAATGTATTTGTGCT  500

seq1  TCAAAGAAAATCGACATGTAATCTTGGCATGTCTTCTACCATTTTGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAAAATCGACATGTAATCTTGGCATGTCTTCTACCATTTTGTGTG  550

seq1  TGTGTGTGTGTGTGTGTGTGTGTA  574
      ||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTA  574

seq1: chr8_30136667_30137774
seq2: B6Ng01-092D07.g_70_1166 (reverse)

seq1  TTTGTAAATTGAAACCAGCCACTACAGCATTGTGTCCTCTTCTATGGAAT  50
      |||||||  || ||||||||||| |||||| |||||||||||| || |||
seq2  TTTGTAA--TG-AACCAGCCACTCCAGCATGGTGTCCTCTTCTTTGAAAT  47

seq1  ATGTGTTGAAGGGTCTGAAATAAGATAGTCATCTATTAGGGAGGGGTTGC  100
      | ||| |||||||||| ||||||||  ||||||||||| |||||||||||
seq2  A-GTGGTGAAGGGTCT-AAATAAGAATGTCATCTATTA-GGAGGGGTTGC  94

seq1  AGAGATAGCTCGGCAGCTAAGAATACTTACTGCTCTTGCAGTAAAACTAG  150
      ||||| ||||| ||||||||||||||||||||||| |||||| |||||||
seq2  AGAGA-AGCTCCGCAGCTAAGAATACTTACTGCTC-TGCAGT-AAACTAG  141

seq1  TTTCAGGTCCCACTACCTCCTGGATGGTTTATAACCATCTATAATTCCAG  200
       ||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  -TTCAGGTCCCACTACCTCCTGGATGGTTTATAACCATCTATAA-TCCAG  189

seq1  TTCCTGGGAAACCTCTGAGTATATTATACACAAACATACGTGGAGGCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGGAAACCTCTGAGTATATTATACACAAACATACGTGGAGGCAAA  239

seq1  ACAGCTATACACATAAAGTTATTAAATCTAAAAAAAACAATCATCTATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTATACACATAAAGTTATTAAATCTAAAAAAAACAATCATCTATGT  289

seq1  GGTCACTCTTATCACTATGACAAGGCTTTGGTTTGATTAAAAGGCTGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACTCTTATCACTATGACAAGGCTTTGGTTTGATTAAAAGGCTGGTG  339

seq1  TATTTTAAATATGGATCCCAAGGTAGTTACATGGGAAGCAGCAGAGCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAATATGGATCCCAAGGTAGTTACATGGGAAGCAGCAGAGCTCT  389

seq1  GAAGGTGAAGAACTTCTGCAGAGTTCATGCCTTGTAAAAGTACACGATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGAAGAACTTCTGCAGAGTTCATGCCTTGTAAAAGTACACGATTT  439

seq1  CTTTCTCTAGCAGGCTTCTACTCAAGCCATCCACCATAGTGTGACATAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTAGCAGGCTTCTACTCAAGCCATCCACCATAGTGTGACATAGC  489

seq1  TAATGATGTTCTCACCTAAGCCAGGACTGCATCTTTGACCTTTCAACCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATGTTCTCACCTAAGCCAGGACTGCATCTTTGACCTTTCAACCTC  539

seq1  CAAAATTATCAAATGAGCATTGTTTCCAAGGCTTGTCACAGAAAAACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTATCAAATGAGCATTGTTTCCAAGGCTTGTCACAGAAAAACACA  589

seq1  TGAGAACAACGTGGATGGCAATATGACAGACTAATAGAGCTATGGGCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACAACGTGGATGGCAATATGACAGACTAATAGAGCTATGGGCTTT  639

seq1  AGAGAATAACTATTCGCATAATCTATTTCAATCATATTTTCCAAATTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATAACTATTCGCATAATCTATTTCAATCATATTTTCCAAATTATA  689

seq1  AAACAGAAAATGTCATGTAACTCATAAGCTTGGTGTGATAATTAAGTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAAAATGTCATGTAACTCATAAGCTTGGTGTGATAATTAAGTGGG  739

seq1  ATTATTTCTCTAAAGTAATATGTATATATATAATATATATATTATATATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTCTCTAAAGTAATATGTATATATATAATATATATATTATATATA  789

seq1  CATATACACACATGTGTGTATAATTATATGTATATGTATATAGATATATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACACACATGTGTGTATAATTATATGTATATGTATATAGATATATA  839

seq1  GTTATATATAGATAAATAAATGATAGGTAGATAGATTCTTATTAAGTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATATAGATAAATAAATGATAGGTAGATAGATTCTTATTAAGTAAA  889

seq1  TGGCTTATTTTCTCCTCCATTATTTTAAGTAATGCCAAACTATATCCTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTATTTTCTCCTCCATTATTTTAAGTAATGCCAAACTATATCCTCA  939

seq1  TTTTCATTTGAATGAAACTTGTAATAGTTTTGGTTGAAGTTAAAAAGAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTTGAATGAAACTTGTAATAGTTTTGGTTGAAGTTAAAAAGAAA  989

seq1  ATAATTCTCTGTGTGTATGCTATTTAAAGTCTGTGAGGAAGCTGAAGATA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCTCTGTGTGTATGCTATTTAAAGTCTGTGAGGAAGCTGAAGATA  1039

seq1  TAGCAGCCTTTGTCATGTTACATTATGCAGGCAGTTCTGCATATTAGCAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGCCTTTGTCATGTTACATTATGCAGGCAGTTCTGCATATTAGCAA  1089

seq1  CTGAATTC  1108
      ||||||||
seq2  CTGAATTC  1097