BAC Information

Click to search

BAC

Clone NameB6Ng01-092J13
Chromosome8 (Build37)
Map Location 65,012,031 - 65,156,341
singlet/doubletdoublet
Overlap geneLOC100040804, LOC665267
Upstream genePalld, LOC100040872, BC013672, Anxa10, LOC100040775, LOC384830
Downstream geneSpock3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092J13.bB6Ng01-092J13.g
ACCDH904314DH904315
length1,1091,194
definitionDH904314|Mus musculus domesticus DNA, BAC clone: B6Ng01-092J13, 5' end.DH904315|Mus musculus domesticus DNA, BAC clone: B6Ng01-092J13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,155,233 - 65,156,341)(65,012,031 - 65,013,256)
sequence
gaattccattaataatgttgccttgttttatacagataaaggatattaca
gagatgtgaccatggaagatcaagccctaattggtacatctacaatgcaa
cccctacctgagggtctgggaatatagcagtaaagagggacagaatgatg
ataagagcacaaaaccaaaatgtgtactacaagattctgtctttagacat
gacagaaatgctgcatctgtgaaatttcaacagaatgtgcacctaaatag
gaccttcacaatgacagcaccagttagcatgctaatatggatgagaaaag
tttcacgtgatctcatggtttgatgaagagatataagcaacatacactgg
gagataaagaaggttttcacttggaaatagtccgctgataggttatctaa
tcccaagtggtcaactctaaacacatgcacatatgagcaacactaaatag
atttaataggttgtgcttttataagtgtgcttgtgtgtatgtgtttgcaa
atatgtgtatgtgtgtgttgagagtatgcaaaaaatattacgaataggtc
ataactttggaaagaagttggggtgacacaaacccagaaaaccacaaata
aagacaaaggtttaatgtattttttatagtaaatggtacttttcttatta
ttgtgcctattgctatgaataccatagctaccattctgccatctttataa
ctgctgtaaatgtaaattaaatatgaaataactaaaaagtagattaaata
aataaatgttgagtttggattagaatgcccccatagtctcatatgtttga
atacctggttcttgattggtctttctccatttccctgtctctgttttttt
ctttgtctctgtctccttttcttctctctcttactctctctctttttatc
tctgtctttctttctgtctccctctttacctctcccttactccccctgtc
catcctccttcccttctctccctctcccctcctctctttcccttctcccc
tcttcctggtcttccccatcaaccttgctctgctttcacatgtgatcaag
aatgtaagcctcacaaggttgttcttgttacatgcctttgctctgtcatg
atgactctt
gaattccaaatattcaatctgtatttcattcttatgtaataatgttttaa
tagctttcaaatgtcatcatattcaagtgttcctcaaattgaagcaagtt
ggttatatctccttcttatccagatattattttcttacattggatttggc
ttcatctaatacatggtttaattgaggaggatgatacatgggtagtatag
aaacacataaggaagctaatgctggctttaatcaaggaggatattgccta
tggttcatatataaacacattaaaaacctggatcagagagaaaaagttgg
aatttatgtgcaacattatttctgattccacttctagaaatgtttacatg
tctgaacttattttaatttgttaccttcgactgaataatcacaaatatat
tttccggtttttgaaattttgtatcatattaagaccaagttagaaaacag
ggaaacattctatttgaaatactaagtacagaaacaaaacattttagtca
catataaatgatatgacagaatctaagaaaaagtgcagtttccattctaa
tcctgacatatttaaccactatattttattcttatttgatatataaagta
cattgcataagaccttgctgttatcttctagtaaattctccattatgaaa
tcaagaagtagatattaaattgtttttctcttaacttaacaattagctct
ggattcacattactggttatttgatggtttgtttgtttcttagtttattt
cagaaccatgtgctaatttggttggagctttcatggagtcaataacttgg
atggagccaaagacaagcagggaagaagcgaattatgagtgtggtggttt
gaataagcttggcccagagatgtcactattaagtgttgccttgttggagt
gatggtgtcactgtagggtggcttcgaaccctcaacctagcttcctggaa
gttaggctctcctagtggccttctgatcaaggatgtcaaactctcagcat
cgtctgcatctactggcctggaatcaacatgctctcgccttgatgaattg
gaatgaactctcgaatcataagccgcccagtaatttttgtcctttaaaga
tggctggtcatgtgcttcctctccctaagaacactataatgtagtaagta
ttaatgaataagtgggttttcagactatgatctccttgggtata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_65155233_65156341
seq2: B6Ng01-092J13.b_47_1155 (reverse)

seq1  AAGAGTCCATCATGACAGAGCAAAGGCATGGTAACAGGAACA--CCTGTG  48
      |||||| |||||||||||||||||||||| |||||| |||||  | ||||
seq2  AAGAGT-CATCATGACAGAGCAAAGGCAT-GTAACAAGAACAACCTTGTG  48

seq1  A-GCTTACA-TCTTGATCCACATGTTGGAAGCAGAGCAAGGGTGATGGGG  96
      | ||||||| ||||||| |||||| || ||||||||||||| ||||||||
seq2  AGGCTTACATTCTTGAT-CACATG-TGAAAGCAGAGCAAGGTTGATGGGG  96

seq1  AGGACCAGGGAGAGGGGGAGAGGGAAAGAGAGGAGGGGAGAGGGAGAGAA  146
      | ||||||| |||||||   ||||||||||||||||||||||||||||||
seq2  AAGACCAGGAAGAGGGGAGAAGGGAAAGAGAGGAGGGGAGAGGGAGAGAA  146

seq1  GGGAAGGAGGATGGACAGGGGGAGTAAGGGAGAGGTAAAGAGGGAGACAG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGAGGATGGACAGGGGGAGTAAGGGAGAGGTAAAGAGGGAGACAG  196

seq1  AAAGAAAGACAGAGATAAAAAGAGAGAGAGTAAGAGAGAGAAGAAAAGGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGACAGAGATAAAAAGAGAGAGAGTAAGAGAGAGAAGAAAAGGA  246

seq1  GACAGAGACAAAGAAAAAAACAGAGACAGGGAAATGGAGAAAGACCAATC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGACAAAGAAAAAAACAGAGACAGGGAAATGGAGAAAGACCAATC  296

seq1  AAGAACCAGGTATTCAAACATATGAGACTATGGGGGCATTCTAATCCAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCAGGTATTCAAACATATGAGACTATGGGGGCATTCTAATCCAAA  346

seq1  CTCAACATTTATTTATTTAATCTACTTTTTAGTTATTTCATATTTAATTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACATTTATTTATTTAATCTACTTTTTAGTTATTTCATATTTAATTT  396

seq1  ACATTTACAGCAGTTATAAAGATGGCAGAATGGTAGCTATGGTATTCATA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTACAGCAGTTATAAAGATGGCAGAATGGTAGCTATGGTATTCATA  446

seq1  GCAATAGGCACAATAATAAGAAAAGTACCATTTACTATAAAAAATACATT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAGGCACAATAATAAGAAAAGTACCATTTACTATAAAAAATACATT  496

seq1  AAACCTTTGTCTTTATTTGTGGTTTTCTGGGTTTGTGTCACCCCAACTTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTTGTCTTTATTTGTGGTTTTCTGGGTTTGTGTCACCCCAACTTC  546

seq1  TTTCCAAAGTTATGACCTATTCGTAATATTTTTTGCATACTCTCAACACA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAAGTTATGACCTATTCGTAATATTTTTTGCATACTCTCAACACA  596

seq1  CACATACACATATTTGCAAACACATACACACAAGCACACTTATAAAAGCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACACATATTTGCAAACACATACACACAAGCACACTTATAAAAGCA  646

seq1  CAACCTATTAAATCTATTTAGTGTTGCTCATATGTGCATGTGTTTAGAGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTATTAAATCTATTTAGTGTTGCTCATATGTGCATGTGTTTAGAGT  696

seq1  TGACCACTTGGGATTAGATAACCTATCAGCGGACTATTTCCAAGTGAAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCACTTGGGATTAGATAACCTATCAGCGGACTATTTCCAAGTGAAAA  746

seq1  CCTTCTTTATCTCCCAGTGTATGTTGCTTATATCTCTTCATCAAACCATG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTTATCTCCCAGTGTATGTTGCTTATATCTCTTCATCAAACCATG  796

seq1  AGATCACGTGAAACTTTTCTCATCCATATTAGCATGCTAACTGGTGCTGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCACGTGAAACTTTTCTCATCCATATTAGCATGCTAACTGGTGCTGT  846

seq1  CATTGTGAAGGTCCTATTTAGGTGCACATTCTGTTGAAATTTCACAGATG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGAAGGTCCTATTTAGGTGCACATTCTGTTGAAATTTCACAGATG  896

seq1  CAGCATTTCTGTCATGTCTAAAGACAGAATCTTGTAGTACACATTTTGGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTTCTGTCATGTCTAAAGACAGAATCTTGTAGTACACATTTTGGT  946

seq1  TTTGTGCTCTTATCATCATTCTGTCCCTCTTTACTGCTATATTCCCAGAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGCTCTTATCATCATTCTGTCCCTCTTTACTGCTATATTCCCAGAC  996

seq1  CCTCAGGTAGGGGTTGCATTGTAGATGTACCAATTAGGGCTTGATCTTCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGTAGGGGTTGCATTGTAGATGTACCAATTAGGGCTTGATCTTCC  1046

seq1  ATGGTCACATCTCTGTAATATCCTTTATCTGTATAAAACAAGGCAACATT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCACATCTCTGTAATATCCTTTATCTGTATAAAACAAGGCAACATT  1096

seq1  ATTAATGGAATTC  1109
      |||||||||||||
seq2  ATTAATGGAATTC  1109

seq1: chr8_65012031_65013256
seq2: B6Ng01-092J13.g_68_1261

seq1  GAATTCCAAATATTCAATCTGTATTTCATTCTTATGTAATAATGTTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATATTCAATCTGTATTTCATTCTTATGTAATAATGTTTTAA  50

seq1  TAGCTTTCAAATGTCATCATATTCAAGTGTTCCTCAAATTGAAGCAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTCAAATGTCATCATATTCAAGTGTTCCTCAAATTGAAGCAAGTT  100

seq1  GGTTATATCTCCTTCTTATCCAGATATTATTTTCTTACATTGGATTTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATATCTCCTTCTTATCCAGATATTATTTTCTTACATTGGATTTGGC  150

seq1  TTCATCTAATACATGGTTTAATTGAGGAGGATGATACATGGGTAGTATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTAATACATGGTTTAATTGAGGAGGATGATACATGGGTAGTATAG  200

seq1  AAACACATAAGGAAGCTAATGCTGGCTTTAATCAAGGAGGATATTGCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATAAGGAAGCTAATGCTGGCTTTAATCAAGGAGGATATTGCCTA  250

seq1  TGGTTCATATATAAACACATTAAAAACCTGGATCAGAGAGAAAAAGTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCATATATAAACACATTAAAAACCTGGATCAGAGAGAAAAAGTTGG  300

seq1  AATTTATGTGCAACATTATTTCTGATTCCACTTCTAGAAATGTTTACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATGTGCAACATTATTTCTGATTCCACTTCTAGAAATGTTTACATG  350

seq1  TCTGAACTTATTTTAATTTGTTACCTTCGACTGAATAATCACAAATATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACTTATTTTAATTTGTTACCTTCGACTGAATAATCACAAATATAT  400

seq1  TTTCCGGTTTTTGAAATTTTGTATCATATTAAGACCAAGTTAGAAAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCGGTTTTTGAAATTTTGTATCATATTAAGACCAAGTTAGAAAACAG  450

seq1  GGAAACATTCTATTTGAAATACTAAGTACAGAAACAAAACATTTTAGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACATTCTATTTGAAATACTAAGTACAGAAACAAAACATTTTAGTCA  500

seq1  CATATAAATGATATGACAGAATCTAAGAAAAAGTGCAGTTTCCATTCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAAATGATATGACAGAATCTAAGAAAAAGTGCAGTTTCCATTCTAA  550

seq1  TCCTGACATATTTAACCACTATATTTTATTCTTATTTGATATATAAAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACATATTTAACCACTATATTTTATTCTTATTTGATATATAAAGTA  600

seq1  CATTGCATAAGACCTTGCTGTTATCTTCTAGTAAATTCTCCATTATGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCATAAGACCTTGCTGTTATCTTCTAGTAAATTCTCCATTATGAAA  650

seq1  TCAAGAAGTAGATATTAAATTGTTTTTCTCTTAACTTAACAATTAGCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAGTAGATATTAAATTGTTTTTCTCTTAACTTAACAATTAGCTCT  700

seq1  GGATTCACATTACTGGTTATTTGATGGTTTGTTTGTTTCTTAGTTTATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCACATTACTGGTTATTTGATGGTTTGTTTGTTTCTTAGTTTATTT  750

seq1  CAGAACCATGTGCTAATTTGGTTGGAGCTTTCATGGAGTCAATAACTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCATGTGCTAATTTGGTTGGAGCTTTCATGGAGTCAATAACTTGG  800

seq1  ATGGAGCCAAAGACAAGCAGGGAAGAAGCGAAATTATGAGTGTGGTGGTT  850
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATGGAGCCAAAGACAAGCAGGGAAGAAGCG-AATTATGAGTGTGGTGGTT  849

seq1  TGAATAAGCTTGGCCCAGAGAATGTCACTATTAAGTGTTGCCTTGTTGGA  900
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGAATAAGCTTGGCCCAGAG-ATGTCACTATTAAGTGTTGCCTTGTTGGA  898

seq1  GTGATGGTGTCACTGTAGGGGTGGGCTTCGAAACCCTCAACCTAGCTTCC  950
      ||||||||||||||||||||   ||||||| |||||||||||||||||||
seq2  GTGATGGTGTCACTGTAGGG--TGGCTTCG-AACCCTCAACCTAGCTTCC  945

seq1  TGGAAGTTAGGCTTCTCCTAGTGGCCTTCTGATCAA-GATGTCAAACTCT  999
      |||||||||||| ||||||||||||||||||||||| |||||||||||||
seq2  TGGAAGTTAGGC-TCTCCTAGTGGCCTTCTGATCAAGGATGTCAAACTCT  994

seq1  CAGCTACGTCTGCATCATACTTGCCTGGATATCACCATGCTCCTGCCTTG  1049
      ||||  |||||||||| |||| ||||||| |||| |||||||  ||||||
seq2  CAGCATCGTCTGCATC-TACTGGCCTGGA-ATCAACATGCTCTCGCCTTG  1042

seq1  ATGATATTGGAATGGACCTCT-GAATCTATAAGCCAGCCCCAAGTAAATT  1098
      |||| |||||||| || |||| ||||| ||||||| ||||  ||||| ||
seq2  ATGA-ATTGGAAT-GAACTCTCGAATC-ATAAGCC-GCCC--AGTAATTT  1086

seq1  TTGTCCTTATAAGAGTTGCCTTGGTCATGGTGTCTCTCTTCACACCAAAA  1148
      ||||||||  ||||  || | ||||||||   |  ||||     ||  ||
seq2  TTGTCCTTTAAAGA--TGGC-TGGTCATGTGCTTCCTCT-----CCCTAA  1128

seq1  GAA-ACACTAAGATAGTGAGGAAAAGTAAATAAATGAATTAAGTGTGTTT  1197
      ||| ||  |||  ||||      ||||  || |||||| |||||| ||||
seq2  GAACACTATAATGTAGT------AAGT--ATTAATGAA-TAAGTGGGTTT  1169

seq1  TTCAAGATCTATGATCTCTCTTGGTTATA  1226
      |   ||| |||||||||| ||||| ||||
seq2  T--CAGA-CTATGATCTC-CTTGGGTATA  1194