BAC Information

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BAC

Clone NameB6Ng01-093C04
Chromosome8 (Build37)
Map Location 23,105,529 - 23,223,535
singlet/doubletdoublet
Overlap geneAtp7b, Alg11, Nek5
Upstream geneDefcr21, LOC100038926, Defcr23, LOC100041688, Defcr25, LOC626605, LOC634825, LOC100040619, LOC100038927, Defcr22, Defcr-rs7, LOC100041759, LOC672740, EG665969, LOC100041787, Defcr3, Defcr5, LOC100041811, Defcr-rs1, LOC100040668, LOC100041843, LOC100040678, EG665927, LOC100040693, Defcr20, LOC100041890, LOC100041895, EG626682, LOC100040706, EG665956, LOC635093, Defcr26, Defcr17, LOC100041952, Defcr-ps1, AY761184, LOC100040729, Defcr24, LOC100040739, Defb1, Defb50, Defb2, Defb10, Defb9, Defb11, Defb15, Defb35, Defb13, C86695, Ccdc70
Downstream geneNek3, Ckap2, Vps36, Rpl30-ps2, Thsd1, Tpte, Slc25a15, LOC547006, Mrps31, AI316807, Slc20a2, LOC100040803, Vdac3, Dkk4, Polb, Ikbkb, Plat, Ap3m2, Myst3, LOC100042253, Ank1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093C04.bB6Ng01-093C04.g
ACCDH904704DH904705
length1,13780
definitionDH904704|Mus musculus domesticus DNA, BAC clone: B6Ng01-093C04, 5' end.DH904705|Mus musculus domesticus DNA, BAC clone: B6Ng01-093C04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,105,529 - 23,106,687)(23,223,456 - 23,223,535)
sequence
gaattcccatggttcaagttcacatagtccagaaactttttatgtaaaca
ctccccacatagtaggctactgttatttttgttaagtgaatgcatgagta
aataaatcaatgtttttctgttttggtagtgttagggactaaacccagga
tcttttccatgcaagacaactgttctactagtgagctctgttcccagtcc
atggacatctttgctaaggagtaaaactggaaatacacagggatcatatg
tttgcatgtgttcatgtaaatagctctgaaaaagacccagactcttacca
ctgctaagtgggcagtcactgtccagggtactgaaaaatcactacacaac
cccatgcaggtcctttgtgttgctctcagataaataatggagagcacacg
aagcaggaaacatgctgctgtgccccgacctgctgtcaccatgcatggtg
gagcctgcagagactcctccagcaggtgctccaggcccaggacttaccac
ttgagctgaagagacgagagcaccacagagacagaggacgcagccatggc
tgctgagcccatccacggctgcagcacgatgccaatgggcatgaagacac
ctgccgaaagaggtaccacctgacagctagggaatactgagagccctgct
cggggaacctaggagacactacgcccaccagctttcaaggtgagactaag
ctagcaggaggtgggcaaagggaaggtgagtctgtcttgcttactcttgc
ttagaactatgtatgggtaccaccagccagtgcaggggctgggaaccgcg
gaggataaccactgtggatatggtcatcatccttctctacagaggtagca
cctggtctctagggagcgctggaagccaggtcccaggcagccaggaggga
gtgaagctcctaagctgctctgaggtcagaaagacacttatctgactgcg
gctgtccttcacttcttgtgggtctctatcttcactcttctcgccctttc
ttccacccctctgccccctacactagatagagaggaaaaagagggaaaga
gaaatccctgaataaagtcagggtcagaaagaaggtgacatttcattaac
tgcttctgctgtttaggtgttaagttcttggggggta
tggattacagaaactgcgggatgacagccatacaaaacctatgtgtggac
acaggttgcgggggtgggggtggggagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_23105529_23106687
seq2: B6Ng01-093C04.b_44_1180

seq1  GAATTCCCATGGTTCAAGTTCACATAGTCCAGAAACTTTTTATGTAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATGGTTCAAGTTCACATAGTCCAGAAACTTTTTATGTAAACA  50

seq1  CTCCCCACATAGTAGGCTACTGTTATTTTTGTTAAGTGAATGCATGAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCACATAGTAGGCTACTGTTATTTTTGTTAAGTGAATGCATGAGTA  100

seq1  AATAAATCAATGTTTTTCTGTTTTGGTAGTGTTAGGGACTAAACCCAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATCAATGTTTTTCTGTTTTGGTAGTGTTAGGGACTAAACCCAGGA  150

seq1  TCTTTTCCATGCAAGACAACTGTTCTACTAGTGAGCTCTGTTCCCAGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCATGCAAGACAACTGTTCTACTAGTGAGCTCTGTTCCCAGTCC  200

seq1  ATGGACATCTTTGCTAAGGAGTAAAACTGGAAATACACAGGGATCATATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACATCTTTGCTAAGGAGTAAAACTGGAAATACACAGGGATCATATG  250

seq1  TTTGCATGTGTTCATGTAAATAGCTCTGAAAAAGACCCAGACTCTTACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATGTGTTCATGTAAATAGCTCTGAAAAAGACCCAGACTCTTACCA  300

seq1  CTGCTAAGTGGGCAGTCACTGTCCAGGGTACTGAAAAATCACTACACAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAAGTGGGCAGTCACTGTCCAGGGTACTGAAAAATCACTACACAAC  350

seq1  CCCATGCAGGTCCTTTGTGTTGCTCTCAGATAAATAATGGAGAGCACACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGCAGGTCCTTTGTGTTGCTCTCAGATAAATAATGGAGAGCACACG  400

seq1  AAGCAGGAAACATGCTGCTGTGCCCCGACCTGCTGTCACCATGCATGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGAAACATGCTGCTGTGCCCCGACCTGCTGTCACCATGCATGGTG  450

seq1  GAGCCTGCAGAGACTCCTCCAGCAGGTGCTCCAGGCCCAGGACTTACCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGCAGAGACTCCTCCAGCAGGTGCTCCAGGCCCAGGACTTACCAC  500

seq1  TTGAGCTGAAGAGACGAGAGCACCACAGAGACAGAGGACGCAGCCATGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTGAAGAGACGAGAGCACCACAGAGACAGAGGACGCAGCCATGGC  550

seq1  TGCTGAGCCCATCCACGGCTGCAGCACGATGCCAATGGGCATGAAGACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGCCCATCCACGGCTGCAGCACGATGCCAATGGGCATGAAGACAC  600

seq1  CTGCCGAAAGAGGTACCACCTGACAGCTAGGGAATACTGAGAGCCCTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGAAAGAGGTACCACCTGACAGCTAGGGAATACTGAGAGCCCTGCT  650

seq1  CGGGGAACCTAGGAGACACTACGCCCACCAGCTTTCAAGGTGAGACTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGAACCTAGGAGACACTACGCCCACCAGCTTTCAAGGTGAGACTAAG  700

seq1  CTAGCAGGAGGTGGGCAAAGGGAAGGTGAGTCTGTCTTGCTTACTCTTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAGGAGGTGGGCAAAGGGAAGGTGAGTCTGTCTTGCTTACTCTTGC  750

seq1  TTAGAACTATGTATGGGTACCACCAGCCAGTGCAGGGGCTGGGAACCGCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACTATGTATGGGTACCACCAGCCAGTGCAGGGGCTGGGAACCGCG  800

seq1  GAGGATAACCACTGTGGATATGGTCATCATCCTTCTCTACAGAGGTAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAGGATAACCACTGTGGATATGGTCATCATCCTTCTCTACAGAGGTAGC-  849

seq1  ACCTGGTCTCTAGGGAGCGCTGGAAGCCAGGTCCCAGGCAGCCAGGAGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTCTCTAGGGAGCGCTGGAAGCCAGGTCCCAGGCAGCCAGGAGGG  899

seq1  AGTGAAGCTCCTAAGCTGCTCTGAGGTCAGAAAAGACACTTATCTGACTG  950
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGTGAAGCTCCTAAGCTGCTCTGAGGTCAG-AAAGACACTTATCTGACTG  948

seq1  CGGCTGTCCTTCACTTCTTTGTGGGTTCTTCTATCTTCCACTCTTCTCCG  1000
      ||||||||||||||||| ||||||||   |||||||| ||||||||||  
seq2  CGGCTGTCCTTCACTTC-TTGTGGGT--CTCTATCTT-CACTCTTCTC--  992

seq1  CCCCTTTCTTCCACCCCTTCTGCCCCCCTAACACTAGATAAGAGAGGAAA  1050
       |||||||||||||||| |||||||||   ||||||||| ||||||||||
seq2  GCCCTTTCTTCCACCCC-TCTGCCCCC--TACACTAGAT-AGAGAGGAAA  1038

seq1  AAGAGGGGAAAGGAAGGAGATCCCTGAATAAAGTCAGGGGTCAGAAAGAA  1100
      ||||||| ||  |||    ||||||||||||||||| |||||||||||||
seq2  AAGAGGGAAAGAGAA----ATCCCTGAATAAAGTCA-GGGTCAGAAAGAA  1083

seq1  GGTGACAATATCATTAGACTGCTTCCTGCTGTTTAGGGTGTTAAGTTCCT  1150
      |||||| || |||||| ||||||| |||||||||| ||||||||||| ||
seq2  GGTGAC-ATTTCATTA-ACTGCTT-CTGCTGTTTA-GGTGTTAAGTT-CT  1128

seq1  TGGGGGGTA  1159
      |||||||||
seq2  TGGGGGGTA  1137

seq1: chr8_23223456_23223535
seq2: B6Ng01-093C04.g_72_151 (reverse)

seq1  CCCCTCCCCACCCCCACCCCCGCAACCTGTGTCCACACATAGGTTTTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCCACCCCCACCCCCGCAACCTGTGTCCACACATAGGTTTTGTA  50

seq1  TGGCTGTCATCCCGCAGTTTCTGTAATCCA  80
      ||||||||||||||||||||||||||||||
seq2  TGGCTGTCATCCCGCAGTTTCTGTAATCCA  80