BAC Information

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BAC

Clone NameB6Ng01-094H18
Chromosome8 (Build37)
Map Location 111,307,971 - 111,404,399
singlet/doubletdoublet
Overlap geneAtbf1
Upstream geneLOC100041744
Downstream gene4922502B01Rik, Gm1943, LOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094H18.bB6Ng01-094H18.g
ACCDH905695DH905696
length1,1031,064
definitionDH905695|Mus musculus domesticus DNA, BAC clone: B6Ng01-094H18, 5' end.DH905696|Mus musculus domesticus DNA, BAC clone: B6Ng01-094H18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,403,273 - 111,404,399)(111,307,971 - 111,309,038)
sequence
gaattctttgtctcacggttatacctttctgttagttctctacccacaag
cttttctggaaggaaaaccctgtaagagatagagccaggccacccacaat
taccaccatggcccttgggctttgatgctacctggcacacgaggaagctg
ccttaaatacaccctagaaaacagataggtgcaagtacaaacaagaccgt
ggtaagcactcagccgcagctcgagccccgccctggcttgctgttcacat
gttgttgagtggggctcatcccacttcttaggaagggacaagaacaccca
tgctgctagctggggtcaggcactacatcctgacaacacatcatcctgca
tcagaagatacacaaatgggccagagagagggtgctgtaggtaaaggtgc
ttgctgccaagcctggtggcctgagttcaatccccagagtctacatggtg
gagaagagagtgacttaccaccacgtcatcctccgaccccatgcccttgt
gcagccacccccacaacgttaaataaaaactttttaaaatgtcttttaaa
agacacacggaaagcctagaagattttttttctagaaatttctgaatgaa
gctcagaagcaaccctaccactggtagccctcagcccttgggtctcactt
ggctcctgcctgcaaacacccctgagccacatggattcaggatgacagca
gggccaccagctcagtcccaagagccatcagatatgacccaagactgaaa
gccatgcagggcatggtggtccacggctgtgactgccatgtccagaaagg
ctgagtgaggcaggagaactgagtttaaggctagcctcggttaaccagaa
agcccctcagaaactaagagtaagattaaaaggatgcaacccaccaacga
tggacatggcagctgcctggagtaagcagtgctgcagttttgagacgagc
ctaaggcagtgaggtgggacgtgtacggtttacatgtctgagactgacac
aggggtgacagcactccagatcctgctgacgcaagatgtgggtgaatgct
tctaaccacggagctgacaggctcagtcttgaatgccatctctggttctc
tgg
gaattccttggtggggctcatcttaatttttgttgttgttgttttttgat
tgtttttcacaaatgtaagaaatgtagccaaaagttgtgatctatcttgt
tgttgttgttgttgttgtagtgttatatgaaagtctaccctagttaaaat
ggtctattgatttgtcttctccaaccagaggactctacccagaagcctca
gctgcaggaagggaagactggtgctctgttctgttcttctcatacttcct
tgcccagcttttgtagcctctgccccctcatgaagctgaggcaagaggga
atttcccataaggatgaggacctacacatctgggtgggttttatagtgca
tgcacacttttggagagttttgttccagatagttcagttttcttctgact
ttattgcaggtataaaaggaagttttaaaagcagaacggagaattcccgt
tcttgggctggagcaatggctcagtggctcagagcatcgattgctgttca
ggaggacatgggttcgattctcccgtggcagctcacagctggacgtcact
ccagttgcaggggatctgacacgatcacacacacacacacacacacacac
acacacacacgtgcaggcaaacgccagtgcacataaaattaaaataagtc
attaaaaaaaattcctatcttcatctgtagtcattttgcaacatatttgt
gtgttatacatacatgtacacatacataccacatacttgcatgtggttct
cattaaggttttttttttgtttgtttgtattttttttttttaaatatagc
aagacagggttttactatgtagcccatgatggcttcacagttacctttcc
acagctttcttgtctctgcctctcagtactgggattgggaggtggggttt
accatcctagctcttacgttgtttgaggatcggaggcacatggcctccct
cctctgcatcagcacgtctttctgacaactatccgtgttaacatggccag
gcataggcctccattaacccatccacgaccacatccagatttgcagttgt
cttctgtgatgctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_111403273_111404399
seq2: B6Ng01-094H18.b_46_1148 (reverse)

seq1  CCAGAGATACCCAGAGATGGCATCTCAAGGACTGGCGCCTGCTCAGGCTC  50
      ||||||  | ||||||||||||| |||| |||| | ||||| ||| ||||
seq2  CCAGAG--AACCAGAGATGGCAT-TCAA-GACT-GAGCCTG-TCA-GCTC  43

seq1  CGTGGTTTAGAAGCATATCAACCCACATCTCTGCGTCACGCAGGATTCTG  100
      ||||| |||||||||| || |||||||||| ||||||| |||||| ||| 
seq2  CGTGG-TTAGAAGCAT-TC-ACCCACATCT-TGCGTCA-GCAGGA-TCT-  86

seq1  GGAGTGCCTGTCAACCCCTGGTTGTCAGTCTCAGAACATGTAAACCGTAC  150
      |||||| ||||| |||||||  |||||||||||| |||||||||||||||
seq2  GGAGTG-CTGTC-ACCCCTG--TGTCAGTCTCAG-ACATGTAAACCGTAC  131

seq1  ACCGTCCCACCTCACTGCCTTAGGCTCCGTCTTCAAAACTGCAGCACCTG  200
      | |||||||||||||||||||||||| |||| |||||||||||||| |||
seq2  A-CGTCCCACCTCACTGCCTTAGGCT-CGTC-TCAAAACTGCAGCA-CTG  177

seq1  CTTACTTCCAGGCAGCCTGCCATGTCCATCGTTGGTGGGTTGCATCCTTT  250
      ||||| ||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTTAC-TCCAGGCAG-CTGCCATGTCCATCGTTGGTGGGTTGCATCCTTT  225

seq1  TAATCTTACTCTTAGTTTCTGAGGGGCTTTCTGGTTAACCGAGGCTAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTACTCTTAGTTTCTGAGGGGCTTTCTGGTTAACCGAGGCTAGCC  275

seq1  TTAAACTCAGTTCTCCTGCCTCACTCAGCC-TTCTGGACATGGCAGTCAC  349
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTAAACTCAGTTCTCCTGCCTCACTCAGCCTTTCTGGACATGGCAGTCAC  325

seq1  AGCCGTGGACCACCATGCCCTGCATGGCTTTCAGTCTTGGGTCATATCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGTGGACCACCATGCCCTGCATGGCTTTCAGTCTTGGGTCATATCTG  375

seq1  ATGGCTCTTGGGACTGAGCTGGTGGCCCTGCTGTCATCCTGAATCCATGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCTTGGGACTGAGCTGGTGGCCCTGCTGTCATCCTGAATCCATGT  425

seq1  GGCTCAGGGGTGTTTGCAGGCAGGAGCCAAGTGAGACCCAAGGGCTGAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGGGGTGTTTGCAGGCAGGAGCCAAGTGAGACCCAAGGGCTGAGG  475

seq1  GCTACCAGTGGTAGGGTTGCTTCTGAGCTTCATTCAGAAATTTCTAGAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCAGTGGTAGGGTTGCTTCTGAGCTTCATTCAGAAATTTCTAGAAA  525

seq1  AAAAATCTTCTAGGCTTTCCGTGTGTCTTTTAAAAGACATTTTAAAAAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTTCTAGGCTTTCCGTGTGTCTTTTAAAAGACATTTTAAAAAGT  575

seq1  TTTTATTTAACGTTGTGGGGGTGGCTGCACAAGGGCATGGGGTCGGAGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTAACGTTGTGGGGGTGGCTGCACAAGGGCATGGGGTCGGAGGA  625

seq1  TGACGTGGTGGTAAGTCACTCTCTTCTCCACCATGTAGACTCTGGGGATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGTGGTGGTAAGTCACTCTCTTCTCCACCATGTAGACTCTGGGGATT  675

seq1  GAACTCAGGCCACCAGGCTTGGCAGCAAGCACCTTTACCTACAGCACCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGGCCACCAGGCTTGGCAGCAAGCACCTTTACCTACAGCACCCT  725

seq1  CTCTCTGGCCCATTTGTGTATCTTCTGATGCAGGATGATGTGTTGTCAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGGCCCATTTGTGTATCTTCTGATGCAGGATGATGTGTTGTCAGG  775

seq1  ATGTAGTGCCTGACCCCAGCTAGCAGCATGGGTGTTCTTGTCCCTTCCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGTGCCTGACCCCAGCTAGCAGCATGGGTGTTCTTGTCCCTTCCTA  825

seq1  AGAAGTGGGATGAGCCCCACTCAACAACATGTGAACAGCAAGCCAGGGCG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGGGATGAGCCCCACTCAACAACATGTGAACAGCAAGCCAGGGCG  875

seq1  GGGCTCGAGCTGCGGCTGAGTGCTTACCACGGTCTTGTTTGTACTTGCAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCGAGCTGCGGCTGAGTGCTTACCACGGTCTTGTTTGTACTTGCAC  925

seq1  CTATCTGTTTTCTAGGGTGTATTTAAGGCAGCTTCCTCGTGTGCCAGGTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGTTTTCTAGGGTGTATTTAAGGCAGCTTCCTCGTGTGCCAGGTA  975

seq1  GCATCAAAGCCCAAGGGCCATGGTGGTAATTGTGGGTGGCCTGGCTCTAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAAAGCCCAAGGGCCATGGTGGTAATTGTGGGTGGCCTGGCTCTAT  1025

seq1  CTCTTACAGGGTTTTCCTTCCAGAAAAGCTTGTGGGTAGAGAACTAACAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACAGGGTTTTCCTTCCAGAAAAGCTTGTGGGTAGAGAACTAACAG  1075

seq1  AAAGGTATAACCGTGAGACAAAGAATTC  1127
      ||||||||||||||||||||||||||||
seq2  AAAGGTATAACCGTGAGACAAAGAATTC  1103

seq1: chr8_111307971_111309038
seq2: B6Ng01-094H18.g_68_1131

seq1  GAATTCCTTGGTGGGGCTCATCTTAATTTTTGTTGTTGTTGTTTTTTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGGTGGGGCTCATCTTAATTTTTGTTGTTGTTGTTTTTTGAT  50

seq1  TGTTTTTCACAAATGTAAGAAATGTAGCCAAAAGTTGTGATCTATCTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCACAAATGTAAGAAATGTAGCCAAAAGTTGTGATCTATCTTGT  100

seq1  TGTTGTTGTTGTTGTTGTAGTGTTATATGAAAGTCTACCCTAGTTAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTGTTGTTGTTGTAGTGTTATATGAAAGTCTACCCTAGTTAAAAT  150

seq1  GGTCTATTGATTTGTCTTCTCCAACCAGAGGACTCTACCCAGAAGCCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTATTGATTTGTCTTCTCCAACCAGAGGACTCTACCCAGAAGCCTCA  200

seq1  GCTGCAGGAAGGGAAGACTGGTGCTCTGTTCTGTTCTTCTCATACTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGGAAGGGAAGACTGGTGCTCTGTTCTGTTCTTCTCATACTTCCT  250

seq1  TGCCCAGCTTTTGTAGCCTCTGCCCCCTCATGAAGCTGAGGCAAGAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGCTTTTGTAGCCTCTGCCCCCTCATGAAGCTGAGGCAAGAGGGA  300

seq1  ATTTCCCATAAGGATGAGGACCTACACATCTGGGTGGGTTTTATAGTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCATAAGGATGAGGACCTACACATCTGGGTGGGTTTTATAGTGCA  350

seq1  TGCACACTTTTGGAGAGTTTTGTTCCAGATAGTTCAGTTTTCTTCTGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACTTTTGGAGAGTTTTGTTCCAGATAGTTCAGTTTTCTTCTGACT  400

seq1  TTATTGCAGGTATAAAAGGAAGTTTTAAAAGCAGAACGGAGAATTCCCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGCAGGTATAAAAGGAAGTTTTAAAAGCAGAACGGAGAATTCCCGT  450

seq1  TCTTGGGCTGGAGCAATGGCTCAGTGGCTCAGAGCATCGATTGCTGTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGCTGGAGCAATGGCTCAGTGGCTCAGAGCATCGATTGCTGTTCA  500

seq1  GGAGGACATGGGTTCGATTCTCCCGTGGCAGCTCACAGCTGGACGTCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGACATGGGTTCGATTCTCCCGTGGCAGCTCACAGCTGGACGTCACT  550

seq1  CCAGTTGCAGGGGATCTGACACGATCACACACACACACACACACACACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTGCAGGGGATCTGACACGATCACACACACACACACACACACACAC  600

seq1  ACACACACACGTGCAGGCAAACGCCAGTGCACATAAAATTAAAATAAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACGTGCAGGCAAACGCCAGTGCACATAAAATTAAAATAAGTC  650

seq1  ATTAAAAAAAATTCCTATCTTCATCTGTAGTCATTTTGCAACATATTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAAAATTCCTATCTTCATCTGTAGTCATTTTGCAACATATTTGT  700

seq1  GTGTTATACATACATGTACACATACATACCACATACTTGCATGTGGTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTATACATACATGTACACATACATACCACATACTTGCATGTGGTTCT  750

seq1  CATTAAGGTTTTTTTTTTGTTTGTTTGTATTTTTTTTTTTTAAATATAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAGGTTTTTTTTTTGTTTGTTTGTATTTTTTTTTTTTAAATATAGC  800

seq1  AAGACAGGGTTTTACTATGTAGCCCATGATGGCTTCACAGTTACC-TTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAGACAGGGTTTTACTATGTAGCCCATGATGGCTTCACAGTTACCTTTCC  850

seq1  ACAGCTTTCTTGTCTCTGCCTCCTCAGTACTGGGATT-GGAGGTGTGTTT  898
      ||||||||||||||||||||| ||||||||||||||| ||||||| | ||
seq2  ACAGCTTTCTTGTCTCTGCCT-CTCAGTACTGGGATTGGGAGGTGGGGTT  899

seq1  TACCATCCTAGCTCCTTACGTTGTTTGAGGATC-GAGGCACCATGCCTCC  947
      ||||||||||||| ||||||||||||||||||| |||||||   ||||||
seq2  TACCATCCTAGCT-CTTACGTTGTTTGAGGATCGGAGGCACATGGCCTCC  948

seq1  CTCCTCCTGCATCCAAGCACGTC-TTCTGACAAACTATCCCGTGTTAACA  996
      ||||| |||||||  |||||||| ||||||| |||||| |||||||||||
seq2  CTCCT-CTGCATC--AGCACGTCTTTCTGAC-AACTAT-CCGTGTTAACA  993

seq1  T-GCCAGGCATAGGCTCCCATTAACCCATCCACAGACCACATCCAGATTT  1045
      | |||||||||||||  |||||||||||||||| ||||||||||||||||
seq2  TGGCCAGGCATAGGCCTCCATTAACCCATCCAC-GACCACATCCAGATTT  1042

seq1  TGCCAGTTGTC-CCTCTGATGCTC  1068
         ||||||||  || ||||||||
seq2  --GCAGTTGTCTTCTGTGATGCTC  1064