BAC Information

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BAC

Clone NameB6Ng01-094J22
Chromosome8 (Build37)
Map Location 54,209,089 - 54,347,986
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040220, LOC623935, 1190028D05Rik, LOC676688
Downstream geneAga, Neil3, LOC100040107, Vegfc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094J22.bB6Ng01-094J22.g
ACCDH905790DH905791
length1,0771,132
definitionDH905790|Mus musculus domesticus DNA, BAC clone: B6Ng01-094J22, 5' end.DH905791|Mus musculus domesticus DNA, BAC clone: B6Ng01-094J22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,209,089 - 54,210,174)(54,346,828 - 54,347,986)
sequence
gaattccatatccctttcccccatatgacaggactctgtctgattttcct
ttcacgagatttgtgcatgctttcacaatcactgtgagttcttacatgca
actgccttgttctatccagaaaacaagcttccttgaattgctcctctctc
tcagtctctaacaatcttagagcctcactgtttcttgaagtttagaagag
agtgttatatagatgtcctatcgagggctgagaaggccacattctcttat
tttcataacatgtaaaagaagaaagttttaaaaggtttattttgtccact
gatgtcccaatcattttagaatcaactgcaatagaacatgaagtgcagtc
agtgttgtaattgcacataattatacatattcaaaatattttccatagca
atgttaccaaggattattttactataagtatattcgttaggcatatttaa
aaaataatcccttaagtaataggacaatggcttataactttaacttttat
atttatcaattctgtggatttctagagtcctgagagtgggctgtttatat
tttaaattctagtttttcatactattcattttctagaaacatctcagaat
gtttatctgtaaactacttattataaggaaataattattttcaatacagt
gaaaagaacctcttgtgaaagagaacattgtgagagaacaacatttaatt
acacagtaagcggtctggtacagggcttcctcctggctatgtctgccgta
actgtgattaatgggttaataaacaataggatattatatagagtgtattg
cctttcattatggggattacatttgaaaatgtaggaggtaaatcaattct
aattttatcaaagaatttcaccaacaagtaaattaattttatgtctgaga
ttgtattattaattgcattctcggtaaactactattattttgacatactg
tatttgcagaataagtagtttgatatgaattataaataattgggtgttaa
cagaagcttggcagaaatgaaacttaaaacttttctttgttcaaatatat
tggacaacatggagagtatttcaaaga
gaattccttaagaggggacatgagaaaccaccaggagaggtatagctcag
atatagtagatggcccaggattggagaagtcatgaagagaagctgcagtt
tggcaccatatggaaaggtcagagttactgaaaaggaaccaaggaaggac
tatttatgtagggacagcctggtgcagtggagacctgggcatcttggaaa
tgccagtaccatgaaatgaccatgtgagacattagcagttgttgtgtaga
tccaacttgtagaggggagctggtgaatcaatataattcctatatgaaat
ccacaaattgctttggtcatgttttatctcagtaatagaaaccctaagac
agctgtctttatacagagatcctttgcttgttaatgttattttcttcata
catgctacctatcttccaaggttttctttgattcttttgaacaagtcaca
tactcttcaggctatagtcttttgagcttgccaatcctatcctcatttca
gctgccaccaacttcaattatattttatatccatatagattaccaacatc
atctatgctctacagctgctttggcaagatgaatgttttttctatataat
tctacttgaaaaaataaatacatggtcgaatctctcttttttaactagaa
atgtcgtttgggacatctcacactagcttctcaaaggtttcacattgttc
atagcacagatagtacagtgagaacagtagtagtttattagtccttatta
aagtgaatttgtccatattatacttgtgatgaatatatttcagaatgatc
ataacactttctgggtaggacaattttagcgtcaacagaaaagggatgat
tagttaattagcaactaattaggacttttccttgtcattggaaagaaaga
ttaaatatattcagatatcatgtctataattgattaacagctgctgtcgt
cacttattggataaactaatataaatgtctttacactatcaaaattccat
aacaaccatatctgtgtactttctatattcacttgtattttatttaggta
ggatggtcacaggttaacagaattagagttcagatattagagttctatgg
agagaatttaaaacgttatgagcttgtttcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_54209089_54210174
seq2: B6Ng01-094J22.b_47_1123

seq1  GAATTCCATATCCCTTTCCCCCATATGACAGGACTCTGTCTGATTTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATCCCTTTCCCCCATATGACAGGACTCTGTCTGATTTTCCT  50

seq1  TTCACGAGATTTGTGCATGCTTTCACAATCACTGTGAGTTCTTACATGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACGAGATTTGTGCATGCTTTCACAATCACTGTGAGTTCTTACATGCA  100

seq1  ACTGCCTTGTTCTATCCAGAAAACAAGCTTCCTTGAATTGCTCCTCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTTGTTCTATCCAGAAAACAAGCTTCCTTGAATTGCTCCTCTCTC  150

seq1  TCAGTCTCTAACAATCTTAGAGCCTCACTGTTTCTTGAAGTTTAGAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTCTAACAATCTTAGAGCCTCACTGTTTCTTGAAGTTTAGAAGAG  200

seq1  AGTGTTATATAGATGTCCTATCGAGGGCTGAGAAGGCCACATTCTCTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTATATAGATGTCCTATCGAGGGCTGAGAAGGCCACATTCTCTTAT  250

seq1  TTTCATAACATGTAAAAGAAGAAAGTTTTAAAAGGTTTATTTTGTCCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAACATGTAAAAGAAGAAAGTTTTAAAAGGTTTATTTTGTCCACT  300

seq1  GATGTCCCAATCATTTTAGAATCAACTGCAATAGAACATGAAGTGCAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCCCAATCATTTTAGAATCAACTGCAATAGAACATGAAGTGCAGTC  350

seq1  AGTGTTGTAATTGCACATAATTATACATATTCAAAATATTTTCCATAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGTAATTGCACATAATTATACATATTCAAAATATTTTCCATAGCA  400

seq1  ATGTTACCAAGGATTATTTTACTATAAGTATATTCGTTAGGCATATTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACCAAGGATTATTTTACTATAAGTATATTCGTTAGGCATATTTAA  450

seq1  AAAATAATCCCTTAAGTAATAGGACAATGGCTTATAACTTTAACTTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATCCCTTAAGTAATAGGACAATGGCTTATAACTTTAACTTTTAT  500

seq1  ATTTATCAATTCTGTGGATTTCTAGAGTCCTGAGAGTGGGCTGTTTATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCAATTCTGTGGATTTCTAGAGTCCTGAGAGTGGGCTGTTTATAT  550

seq1  TTTAAATTCTAGTTTTTCATACTATTCATTTTCTAGAAACATCTCAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTCTAGTTTTTCATACTATTCATTTTCTAGAAACATCTCAGAAT  600

seq1  GTTTATCTGTAAACTACTTATTATAAGGAAATAATTATTTTCAATACAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATCTGTAAACTACTTATTATAAGGAAATAATTATTTTCAATACAGT  650

seq1  GAAAAGAACCTCTTGTGAAAGAGAACATTGTGAGAGAACAACATTTAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAACCTCTTGTGAAAGAGAACATTGTGAGAGAACAACATTTAATT  700

seq1  ACACAGTAAGCGGTCTGGTACAGGGCTTCCTCCTGGCTATGTCTGCCGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTAAGCGGTCTGGTACAGGGCTTCCTCCTGGCTATGTCTGCCGTA  750

seq1  ACTGTGATTAAT-GGTTAATAAACAATAGGATATTATATAGAGTGTATTG  799
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACTGTGATTAATGGGTTAATAAACAATAGGATATTATATAGAGTGTATTG  800

seq1  CCTTTCATTAT-GGGATTACATTTGAAAATGTAGGAGGTAAATCAATTCT  848
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCATTATGGGGATTACATTTGAAAATGTAGGAGGTAAATCAATTCT  850

seq1  AATTTTATCAAAGAATTTCACCAACAAAGTAAATTAATTTTATGTCTGAG  898
      ||||||||||||||||||||||||| ||||||||||||||||||||||| 
seq2  AATTTTATCAAAGAATTTCACCAAC-AAGTAAATTAATTTTATGTCTGA-  898

seq1  GATTGTATTATTAATTTGCATTCTCGGTAAAACTACTATTATTTTGACAT  948
      |||||||||||||| ||||||||||||| |||||||||||||||||||||
seq2  GATTGTATTATTAA-TTGCATTCTCGGT-AAACTACTATTATTTTGACAT  946

seq1  ACTGTATTTGCAGAATAAGTAGTTTTGATATGAATTAATAAATAAATTGA  998
      |||||||||||||||||||||| ||||||||||||| |||||| ||||| 
seq2  ACTGTATTTGCAGAATAAGTAG-TTTGATATGAATT-ATAAAT-AATTGG  993

seq1  GTGTTAACAGAAGCTTGGCAGAAATGAAACTTTAAAAACTTTTCTATGTT  1048
      ||||||||||||||||||||||||||||||||  ||||||||||| ||||
seq2  GTGTTAACAGAAGCTTGGCAGAAATGAAACTT--AAAACTTTTCTTTGTT  1041

seq1  CAAATATATTTGACAAACATGGAGAAGTATTTTAAAGA  1086
      |||||||||| ||| ||||||||| ||||||| |||||
seq2  CAAATATATTGGAC-AACATGGAG-AGTATTTCAAAGA  1077

seq1: chr8_54346828_54347986
seq2: B6Ng01-094J22.g_66_1197 (reverse)

seq1  TAGAAACAAAGCTCCATTTAACGTTTTTCTTTATATTTTCTCTCATAGTA  50
      ||||||| ||||||    ||||||     |||| ||| |||| ||||| |
seq2  TAGAAAC-AAGCTC---ATAACGT-----TTTAAATTCTCTC-CATAG-A  39

seq1  ACTCTTAATTATCTTGAACTCTTAAATCTTGTTTAACCTGTGACAATACT  100
      |||||  | |||| ||||||| ||| |||   |||||||||||| || ||
seq2  ACTCT--AATATC-TGAACTC-TAATTCT--GTTAACCTGTGACCATCCT  83

seq1  ACTTAATAAAAATTACAGTGAATAATAGAAAGTTAAACAGATTATGGTTG  150
      || |||  |||||   ||||||| |||||||| || ||||| ||||||||
seq2  ACCTAAATAAAATACAAGTGAAT-ATAGAAAG-TACACAGA-TATGGTTG  130

seq1  TTATTGGAATTTTGATAGTGTAAAGACATTTATATTAGTTTATCCAATAA  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTA-TGGAATTTTGATAGTGTAAAGACATTTATATTAGTTTATCCAATAA  179

seq1  GTTGACGACAAGCAGCTTGTTTAATCAATTATAGAACATGATATCTGAAT  250
      | ||||||| |||||||   |||||||||||||| |||||||||||||||
seq2  G-TGACGAC-AGCAGCT--GTTAATCAATTATAG-ACATGATATCTGAAT  224

seq1  ATATTTAATCTTTCTTTCCAATTGACAAGGAAAAGTCCTAATTAGTTGCT  300
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATATTTAATCTTTCTTTCCAA-TGACAAGGAAAAGTCCTAATTAGTTGCT  273

seq1  AATTAACTAATCATCCCTTTTCTGTTGACGCTAAAATTGTCCTACCCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACTAATCATCCCTTTTCTGTTGACGCTAAAATTGTCCTACCCAGA  323

seq1  AAGTGTTATGATCATTCTGAAATATATTCATCACAAGTATAATATGGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTATGATCATTCTGAAATATATTCATCACAAGTATAATATGGACA  373

seq1  AATTCACTTTAATAAGGACTAATAAACTACTACTGTTCTCACTGTACTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACTTTAATAAGGACTAATAAACTACTACTGTTCTCACTGTACTAT  423

seq1  CTGTGCTATGAACAATGTGAAACCTTTGAGAAGCTAGTGTGAGATGTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTATGAACAATGTGAAACCTTTGAGAAGCTAGTGTGAGATGTCCC  473

seq1  AAACGACATTTCTAGTTAAAAAAGAGAGATTCGACCATGTATTTATTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGACATTTCTAGTTAAAAAAGAGAGATTCGACCATGTATTTATTTTT  523

seq1  TCAAGTAGAATTATATAGAAAAAACATTCATCTTGCCAAAGCAGCTGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTAGAATTATATAGAAAAAACATTCATCTTGCCAAAGCAGCTGTAG  573

seq1  AGCATAGATGATGTTGGTAATCTATATGGATATAAAATATAATTGAAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGATGATGTTGGTAATCTATATGGATATAAAATATAATTGAAGTT  623

seq1  GGTGGCAGCTGAAATGAGGATAGGATTGGCAAGCTCAAAAGACTATAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCAGCTGAAATGAGGATAGGATTGGCAAGCTCAAAAGACTATAGCC  673

seq1  TGAAGAGTATGTGACTTGTTCAAAAGAATCAAAGAAAACCTTGGAAGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGTATGTGACTTGTTCAAAAGAATCAAAGAAAACCTTGGAAGATA  723

seq1  GGTAGCATGTATGAAGAAAATAACATTAACAAGCAAAGGATCTCTGTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCATGTATGAAGAAAATAACATTAACAAGCAAAGGATCTCTGTATA  773

seq1  AAGACAGCTGTCTTAGGGTTTCTATTACTGAGATAAAACATGACCAAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGCTGTCTTAGGGTTTCTATTACTGAGATAAAACATGACCAAAGC  823

seq1  AATTTGTGGATTTCATATAGGAATTATATTGATTCACCAGCTCCCCTCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTGGATTTCATATAGGAATTATATTGATTCACCAGCTCCCCTCTA  873

seq1  CAAGTTGGATCTACACAACAACTGCTAATGTCTCACATGGTCATTTCATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTGGATCTACACAACAACTGCTAATGTCTCACATGGTCATTTCATG  923

seq1  GTACTGGCATTTCCAAGATGCCCAGGTCTCCACTGCACCAGGCTGTCCCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGCATTTCCAAGATGCCCAGGTCTCCACTGCACCAGGCTGTCCCT  973

seq1  ACATAAATAGTCCTTCCTTGGTTCCTTTTCAGTAACTCTGACCTTTCCAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAATAGTCCTTCCTTGGTTCCTTTTCAGTAACTCTGACCTTTCCAT  1023

seq1  ATGGTGCCAAACTGCAGCTTCTCTTCATGACTTCTCCAATCCTGGGCCAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGCCAAACTGCAGCTTCTCTTCATGACTTCTCCAATCCTGGGCCAT  1073

seq1  CTACTATATCTGAGCTATACCTCTCCTGGTGGTTTCTCATGTCCCCTCTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTATATCTGAGCTATACCTCTCCTGGTGGTTTCTCATGTCCCCTCTT  1123

seq1  AAGGAATTC  1159
      |||||||||
seq2  AAGGAATTC  1132