BAC Information

Click to search

BAC

Clone NameB6Ng01-094L04
Chromosome8 (Build37)
Map Location 127,379,977 - 127,565,984
singlet/doubletdoublet
Overlap gene2810004N23Rik, Gnpat, Exoc8, Gm505, Egln1, Tsnax
Upstream gene1700054N08Rik, Acta1, Nup133, Abcb10, Taf5l, AK122209, LOC100042530, LOC100042535, Galnt2, Pgbd5, Cog2, Agt, Capn9, 2310022B05Rik, Ttc13, Arv1, 2310031A18Rik, LOC668444, Trim67
Downstream geneDisc1, Sipa1l2, 4933403G14Rik, 2310079N02Rik, E330039K12Rik, BC021891, Kcnk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094L04.bB6Ng01-094L04.g
ACCDH905850DH905851
length1,1641,127
definitionDH905850|Mus musculus domesticus DNA, BAC clone: B6Ng01-094L04, 5' end.DH905851|Mus musculus domesticus DNA, BAC clone: B6Ng01-094L04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,564,819 - 127,565,984)(127,379,977 - 127,380,700)
sequence
gaattccaaatttaccaaatctgtgaaagttaaacttggtcatgttaact
ggtgactggtgaccatctcataaccatctttgggggggtcaatgttctac
agtctcttcctgcgtaattgccaaactttatggaacacagactagacttt
ctctagcgtctacaaggctaggctctaactcgcccacaccacaactctct
ctctagcccattcttctggtcttgctgttaaaaatccttcattctcagaa
gtcacagtcaggactggctgatttgggcaagcactcaggcataccccaca
cagaacttcatctccacttagccacaccacagaaataacacagcatcttg
tcctggggatctgtctgaaaccacccccaggctatgctcctggaagccct
gcctccttacaacaccctggcgtggaacacaggcttgcaccacagctggg
aaccaggtgctagaatcatgaagaagggtgaagtccttgctccctggcag
tggcatttgggaacccagctgtccttccccagcagcttctagtgaccttt
ggttttgattaaaataaatccgaatgactttaactagtgccaaaccttga
gtgatccattttgtttggattcttcatatgcaatgcaactgacagaagaa
ggcagggattcccagccttgtgagtctgagtgatctgagggaagctgggg
gtgtggctggttgcaatccatgaaaagacgggctgagggcaacagcttcc
tgcaaaccttacccggtcagcacgccctctctcccttatgcataatggat
ggtatgataaaaatcaaccctgcctaatctaaaacagcccttcctggaca
gttacagcagaatgtctactttaagacttagcgccttaaagctctctgag
tggggaaacacagtgacctggagccataggtcagccagccttgacgactt
gatgagttccaggccaaatgaaaggccctgtggtgtgactatgcaacact
aggaaacgcttgctgtcctttgggcgaccaggctcatgatgggggagtgt
ccttgtgagcttgactctgggcctccaccagccggcatggcacaagctag
ttattgccacagatttgccttctgtgtgtcaaagatcttcccatcaactc
ctgcccatgcctgg
gaattccatatttgcattttctaatcccaaggcctcaatcagcacttgtt
tcacatcagggtctgatatggctttgttcacagctgaaactaatctttgt
ttaaaaaaaaaaatcattgaaggcttccctgagccttgtataatttttgt
aaatgatgtagacttctttcctgggtcctcaactttgtctcaagctctta
aagctattaaacggcactgtcctacgactgcgtattcaaattgaactcgt
tcttgtgtatcaccagagcaatgttcactgatcaactcgtccctccctca
ctacaatgtgctgttcccaattcctagcatcttcttgttgggagccatct
aggagaagctaaaacctagcaggtgatcttcctgagatggttctgccgtg
gactgtaaatctgtgactttcacttcttcaggcaaggccgagaagattac
atgctaggaaagattcctgcttaataataatatgcttttcctatagctac
acttagtcacaaaaattatggtttttaactttcactgaacctgttgaact
agtgacagataatgaatgtttagccagatagttactcctagtggatatgt
aggtacagtctctgttgtaaacttcttattcaatgtatgacttcaattta
tgtttgaacttctagtgaacttttgtattaaaaaaagggggggggggaat
gcttggtaaaccctgtgatctattctccttaaaaggtacaaaaggccagg
caagattacactggcgggcgcagcactgggcgtagggcactgagaggaag
accgttattactgttgcattagaacaggaggagaaagcaagattagaaga
gagccgagagaactttttagagagaatttttgtagaaactttttggagaa
ctgaagaacttagaaataaaggctaaaatcacttttcaaagtgtcccttt
tctcctgtagctttaactagcagctgggagtagagccatgcgttcttgca
gacagagcaggcgactctactaattccccactgtttactatgagcactaa
cgccagagactcagtttctgccttgaagactcaaacaggtcagctaccca
ggcagggactagaactagataggtacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_127564819_127565984
seq2: B6Ng01-094L04.b_46_1209 (reverse)

seq1  CCAGGCATGGGCAGGAG-TGATGGGGAAGATCTATGACACACAGAAGGCA  49
      ||||||||||||||||| |||| |||||||||| ||||||||||||||||
seq2  CCAGGCATGGGCAGGAGTTGAT-GGGAAGATCTTTGACACACAGAAGGCA  49

seq1  AACCTGTGGGCAATAACTAGCCTGTGCCATGCCGGCTGGTGGAGG-CCAG  98
      || |||| ||||||||||||| ||||||||||||||||||||||| ||||
seq2  AATCTGT-GGCAATAACTAGCTTGTGCCATGCCGGCTGGTGGAGGCCCAG  98

seq1  AGTCAAGGCTCACAAGGACACTTCCCCATCATGAGCCTGGTCGCCCAAAG  148
      |||||| ||||||||||||||| |||||||||||||||||||||||||||
seq2  AGTCAA-GCTCACAAGGACACTCCCCCATCATGAGCCTGGTCGCCCAAAG  147

seq1  GACAGCAAAGCGTTTCCTAGTGTTGCATAGTCACACCACAGGGCCTTTCA  198
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGC-AAGCGTTTCCTAGTGTTGCATAGTCACACCACAGGGCCTTTCA  196

seq1  TTTGGCCTGGAACTCATCAAGTCGTCAAGGCTGGCTGACCTATGGCTCCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCCTGGAACTCATCAAGTCGTCAAGGCTGGCTGACCTATGGCTCCA  246

seq1  GGTCACTGTGTTTCCCCACTCAGAGAGCTTTAAGGCGCTAAGTCTTAAAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACTGTGTTTCCCCACTCAGAGAGCTTTAAGGCGCTAAGTCTTAAAG  296

seq1  TAGACATTCTGCTGTAACTGTCCAGGAAGGGCTGTTTTAGATTAGGCAGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATTCTGCTGTAACTGTCCAGGAAGGGCTGTTTTAGATTAGGCAGG  346

seq1  GTTGATTTTTATCATACCATCCATTATGCATAAGGGAGAGAGGGCGTGCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATTTTTATCATACCATCCATTATGCATAAGGGAGAGAGGGCGTGCT  396

seq1  GACCGGGTAAGGTTTGCAGGAAGCTGTTGCCCTCAGCCCGTCTTTTCATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGGGTAAGGTTTGCAGGAAGCTGTTGCCCTCAGCCCGTCTTTTCATG  446

seq1  GATTGCAACCAGCCACACCCCCAGCTTCCCTCAGATCACTCAGACTCACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCAACCAGCCACACCCCCAGCTTCCCTCAGATCACTCAGACTCACA  496

seq1  AGGCTGGGAATCCCTGCCTTCTTCTGTCAGTTGCATTGCATATGAAGAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGGAATCCCTGCCTTCTTCTGTCAGTTGCATTGCATATGAAGAAT  546

seq1  CCAAACAAAATGGATCACTCAAGGTTTGGCACTAGTTAAAGTCATTCGGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACAAAATGGATCACTCAAGGTTTGGCACTAGTTAAAGTCATTCGGA  596

seq1  TTTATTTTAATCAAAACCAAAGGTCACTAGAAGCTGCTGGGGAAGGACAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTAATCAAAACCAAAGGTCACTAGAAGCTGCTGGGGAAGGACAG  646

seq1  CTGGGTTCCCAAATGCCACTGCCAGGGAGCAAGGACTTCACCCTTCTTCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTCCCAAATGCCACTGCCAGGGAGCAAGGACTTCACCCTTCTTCA  696

seq1  TGATTCTAGCACCTGGTTCCCAGCTGTGGTGCAAGCCTGTGTTCCACGCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTAGCACCTGGTTCCCAGCTGTGGTGCAAGCCTGTGTTCCACGCC  746

seq1  AGGGTGTTGTAAGGAGGCAGGGCTTCCAGGAGCATAGCCTGGGGGTGGTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGTTGTAAGGAGGCAGGGCTTCCAGGAGCATAGCCTGGGGGTGGTT  796

seq1  TCAGACAGATCCCCAGGACAAGATGCTGTGTTATTTCTGTGGTGTGGCTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACAGATCCCCAGGACAAGATGCTGTGTTATTTCTGTGGTGTGGCTA  846

seq1  AGTGGAGATGAAGTTCTGTGTGGGGTATGCCTGAGTGCTTGCCCAAATCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGATGAAGTTCTGTGTGGGGTATGCCTGAGTGCTTGCCCAAATCA  896

seq1  GCCAGTCCTGACTGTGACTTCTGAGAATGAAGGATTTTTAACAGCAAGAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTCCTGACTGTGACTTCTGAGAATGAAGGATTTTTAACAGCAAGAC  946

seq1  CAGAAGAATGGGCTAGAGAGAGAGTTGTGGTGTGGGCGAGTTAGAGCCTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAATGGGCTAGAGAGAGAGTTGTGGTGTGGGCGAGTTAGAGCCTA  996

seq1  GCCTTGTAGACGCTAGAGAAAGTCTAGTCTGTGTTCCATAAAGTTTGGCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTAGACGCTAGAGAAAGTCTAGTCTGTGTTCCATAAAGTTTGGCA  1046

seq1  ATTACGCAGGAAGAGACTGTAGAACATTGACCCCCCCAAAGATGGTTATG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACGCAGGAAGAGACTGTAGAACATTGACCCCCCCAAAGATGGTTATG  1096

seq1  AGATGGTCACCAGTCACCAGTTAACATGACCAAGTTTAACTTTCACAGAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTCACCAGTCACCAGTTAACATGACCAAGTTTAACTTTCACAGAT  1146

seq1  TTGGTAAATTTGGAATTC  1166
      ||||||||||||||||||
seq2  TTGGTAAATTTGGAATTC  1164

seq1: chr8_127379977_127380700
seq2: B6Ng01-094L04.g_487_1194

seq1  TCACTTCTTCAGGCAAGGCCGAGAAGATTACATGCTAGGAAAGATTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCTTCAGGCAAGGCCGAGAAGATTACATGCTAGGAAAGATTCCTG  50

seq1  CTTAATAATAATATGCTTTTCCTATAGCTACACTTAGTCACAAAAATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATAATAATATGCTTTTCCTATAGCTACACTTAGTCACAAAAATTAT  100

seq1  GGTTTTTAACTTTCACTGAACCTGTTGAACTAGTGACAGATAATGAATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTAACTTTCACTGAACCTGTTGAACTAGTGACAGATAATGAATGT  150

seq1  TTAGCCAGATAGTTACTCCTAGTGGATATGTAGGTACAGTCTCTGTTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCAGATAGTTACTCCTAGTGGATATGTAGGTACAGTCTCTGTTGTA  200

seq1  AACTTCTTATTCAATGTATGACTTCAATTTATGTTTGAACTTCTAGTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTTATTCAATGTATGACTTCAATTTATGTTTGAACTTCTAGTGAA  250

seq1  CTTTTGTATTAAAAAAA-GGGGGGGGGGAATGCTTGGTAAACCCTGTGAT  299
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTTTTGTATTAAAAAAAGGGGGGGGGGGAATGCTTGGTAAACCCTGTGAT  300

seq1  CTATTCTCCTTAAAAGGTACAAAAGGCCAGGCAAGATTACACTGGCGGGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTCCTTAAAAGGTACAAAAGGCCAGGCAAGATTACACTGGCGGGC  350

seq1  GCAGCACTGGGCGTAGGGCACTGAGAGGAAGACCGTTATTACTGTTGCAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCACTGGGCGTAGGGCACTGAGAGGAAGACCGTTATTACTGTTGCAT  400

seq1  TAGAACAGGAGGAGAAAGCAAGATTAGAAGAGAGCCGAGAGAACTTTTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACAGGAGGAGAAAGCAAGATTAGAAGAGAGCCGAGAGAACTTTTTA  450

seq1  GAGAGAATTTTTGTAGAAACTTTTTGGAGAACTGAAGAACTTAGAAATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAATTTTTGTAGAAACTTTTTGGAGAACTGAAGAACTTAGAAATAA  500

seq1  AGGCTAAAATCACTTTTCAAAGTGTCCCTTTTCTTCCTGTAGCTTTAACT  549
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGGCTAAAATCACTTTTCAAAGTGTCCCTTTTC-TCCTGTAGCTTTAACT  549

seq1  AGCAGGCTGGGAGTTAGAGCCATGCGTTCCTGCAGACAGAGCAGGGCGAC  599
      |||| |||||||| ||||||||||||||| ||||||||||||| ||||||
seq2  AGCA-GCTGGGAG-TAGAGCCATGCGTTCTTGCAGACAGAGCA-GGCGAC  596

seq1  TCTACTTAATTCCCCACTGTTTTACTATGAGGCACTAAACGCCAGAGACT  649
      ||||| ||||||||||||| |||||||||| ||||| |||||||||||||
seq2  TCTAC-TAATTCCCCACTG-TTTACTATGA-GCACT-AACGCCAGAGACT  642

seq1  CAAGTTTTCTGGCCTTAGAGGAACTCAAACAGGTCAGCTACCACAGCAAA  699
      ||   ||||| |||||  ||  ||||||||||||||||||||   ||  |
seq2  CA--GTTTCT-GCCTTGAAG--ACTCAAACAGGTCAGCTACCCAGGC--A  685

seq1  GTGACTTAGACTTAAGATAGGTACG  724
      | ||||   |||  |||||||||||
seq2  GGGACTAGAACT--AGATAGGTACG  708