BAC Information

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BAC

Clone NameB6Ng01-096C06
Chromosome8 (Build37)
Map Location 56,082,882 - 56,207,385
singlet/doubletdoublet
Overlap geneGpm6a, LOC667624, LOC100040156, LOC100040382, LOC100040392, EG546212
Upstream geneVegfc, Spcs3, Asb5, Spata4, Wdr17
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096C06.bB6Ng01-096C06.g
ACCDH906886DH906887
length1,1281,039
definitionDH906886|Mus musculus domesticus DNA, BAC clone: B6Ng01-096C06, 5' end.DH906887|Mus musculus domesticus DNA, BAC clone: B6Ng01-096C06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,206,215 - 56,207,385)(56,082,882 - 56,083,922)
sequence
gaattcattctcattggacctttgcctgcttctctggctcatgcctgtct
cactttttctcactatcaatgttttatctctcttttctgtctgtccttta
cacactatgtgtgattacccaatactcactttacaattagtgggtatact
gctggttttctccttggcttttgctgacaccaacatgtgaccttgcttgc
atccctaggaccctctaaagcatactttaattttaagtgccaatccatct
gagctcttaccctaatgagagacaatgtctgggaactttggatcagtttt
gttctcaatcctataggcaagttatttctctctctctctctctctctttc
tctctgcctctctgtactcgtgtaactttccttttcttcatcacacacat
acaaatagttgtaccacacacacacatgaacacactcacagacacatacc
cataaaaaatacacacacatgagggcatgcatgcacacacatatacatgt
acactccccccccacacacacacaggcacacacacacacacaaactgcct
tgattcctactggtttgtgggcactgatatcaagtctactgccagacttc
cacaaacatattgatgtgcctacttctctttgtgactctaggtatctctt
ctaccatctacgatcctacatgcgtctttgcaaaactgtcagcaggcaga
ctgttagtctctttgtccaactgctaaactgtatctaggtccatgggtat
caatccttcacaagtaatgtagagacaaacccacaaagttgattgtggga
gagatattgatttatttttgaagatgttttgagaattgacatgggacaaa
agttaaggtgtggaaaactgtgtaaagaagtccagtgagaatgccaagat
tagctgctgggaagtctgccagagccctaaacccagggtgtaccatgtgg
cagttcctggagggaagcgcctgtgtgtccagtcagtccatctcagagtt
gcagttttctggtgatggaaatcatctggggtcaccttttataaaagcac
tttctgtatccttcagggccctgggccatgagaggagccagcttttagca
ggcctttttggtgcctctttctcaagga
gaattcactgtagtgactgacacatggcaaccatcaagtaattgctagct
attgaaagcatttattttccttttgtcttgggttaaccagaatatttaga
tcatctaggaagtctactgaatgacctacaatcattagttgcatattaat
ggtattatttttaattaaaattgttgttaaattattttccatttcatttg
ctccttccaatccctcctgtgctgaccctcttttgatccttctccaaatc
atggcctattttttttagtttttattgctacatatatatgcaaagaattt
ctaaatatatacatacaacctcctcattttgtttagtgctacttgtttga
aaataaaataaatatattttttttaatttacagaaaagtaatcctgtcaa
tggattaaaaatccattttcaattttgaaagaaagatatgtttatgtttt
cttcacttgtatcctttctgtcactctaataaaaaactctcaacaaattc
atcttagaaaaggaaaggatatatttgtattaaatttctaggtactgcag
tccaccactgaggactgtaagtcaagttaagctaaagatgcaaggcagga
acttaaggcagagacatggaggaatgatgcttgtaaggtgactctctggc
tcactcttattttccaagcttcatattttattttatttttaaacagctct
ttatatttggatatctatattgtaacaaaaactattttatatccctattc
tttacccattttaagtaacatacatcgaagtaattagaaaaaaatcagag
agtttgcaaatatgataaagaggagctcctttcaattaactcatagcaat
atgaatttctgtttttatatttcctttatctgaagtttccaaagcacttt
caaagactagaactattaccagtagctgtcaggggataaaacacagatat
tcagaagatcaaccagatgttgccaggaaagtcttcacttaaccagggac
aagaggtaggatgggtgagtaagggagcagggcggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_56206215_56207385
seq2: B6Ng01-096C06.b_48_1175 (reverse)

seq1  TCCTTGGAGAAAGAGGCACCAAAAAGGGCCCTGCTAAAAGACCTGCTCCT  50
      ||||| |||||||||||||||||||||  ||||||||||| |  ||||||
seq2  TCCTT-GAGAAAGAGGCACCAAAAAGG--CCTGCTAAAAG-CTGGCTCCT  46

seq1  CTCATGG-CCAAGGCCCTGAAGGACTACAGAAAGTGCTTCTATAAAAGGT  99
      ||||||| ||| |||||||||||| |||||||||||||| ||||||||||
seq2  CTCATGGCCCAGGGCCCTGAAGGA-TACAGAAAGTGCTTTTATAAAAGGT  95

seq1  GAACCCCAGATGATTTCCATCACCAGAAAACCTGCAACTCCTGAGATTGG  149
      | |||||||||||||||||||||||||||| |||||||| |||||| |||
seq2  G-ACCCCAGATGATTTCCATCACCAGAAAA-CTGCAACT-CTGAGA-TGG  141

seq1  ACTGACTGGACACACAGGCGCTTCCCTCCAGGGACTGCCACATGGTACAC  199
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACTGACTGGACACACAGGCGCTTCCCTCCAGGAACTGCCACATGGTACAC  191

seq1  CCTGGGTTTAGGGCTCCGGGCAGACTTCCCAGCAGCTAATCTTGGCATTC  249
      ||||||||||||||| | ||||||||||||||||||||||||||||||||
seq2  CCTGGGTTTAGGGCT-CTGGCAGACTTCCCAGCAGCTAATCTTGGCATTC  240

seq1  TCACTGGACTTCTTTACACAGTTTTCCACACCTTAACTTTTGTCCCATGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGACTTCTTTACACAGTTTTCCACACCTTAACTTTTGTCCCATGT  290

seq1  CAATTCTCAAAACATCTTCAAAAATAAATCAATATCTCTCCCACAATCAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTCAAAACATCTTCAAAAATAAATCAATATCTCTCCCACAATCAA  340

seq1  CTTTGTGGGTTTGTCTCTACATTACTTGTGAAGGATTGATACCCATGGAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGGGTTTGTCTCTACATTACTTGTGAAGGATTGATACCCATGGAC  390

seq1  CTAGATACAGTTTAGCAGTTGGACAAAGAGACTAACAGTCTGCCTGCTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATACAGTTTAGCAGTTGGACAAAGAGACTAACAGTCTGCCTGCTGA  440

seq1  CAGTTTTGCAAAGACGCATGTAGGATCGTAGATGGTAGAAGAGATACCTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTGCAAAGACGCATGTAGGATCGTAGATGGTAGAAGAGATACCTA  490

seq1  GAGTCACAAAGAGAAGTAGGCACATCAATATGTTTGTGGAAGTCTGGCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACAAAGAGAAGTAGGCACATCAATATGTTTGTGGAAGTCTGGCAG  540

seq1  TAGACTTGATATCAGTGCCCACAAACCAGTAGGAATCAAGGCAGTTTGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTGATATCAGTGCCCACAAACCAGTAGGAATCAAGGCAGTTTGTG  590

seq1  TGTGTGTGTGTGCCTGTGTGTGTGTGGGGGGGGAGTGTACATGTATATGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGCCTGTGTGTGTGTGGGGGGGGAGTGTACATGTATATGT  640

seq1  GTGTGCATGCATGCCCTCATGTGTGTGTATTTTTTATGGGTATGTGTCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCATGCATGCCCTCATGTGTGTGTATTTTTTATGGGTATGTGTCTG  690

seq1  TGAGTGTGTTCATGTGTGTGTGTGGTACAACTATTTGTATGTGTGTGATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTGTTCATGTGTGTGTGTGGTACAACTATTTGTATGTGTGTGATG  740

seq1  AAGAAAAGGAAAGTTACACGAGTACAGAGAGGCAGAGAGAGAGAGAGAGA  799
      |||||||||||||||||||||||||||||||||                 
seq2  AAGAAAAGGAAAGTTACACGAGTACAGAGAGGC-----------------  773

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATA  849
                       ||||||| |||||||||||||||||||||||||
seq2  -----------------AGAGAGAAAGAGAGAGAGAGAGAGAGAGAAATA  806

seq1  ACTTGCCTATAGGATTGAGAACAAAACTGATCCAAAGTTCCCAGACATTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCTATAGGATTGAGAACAAAACTGATCCAAAGTTCCCAGACATTG  856

seq1  TCTCTCATTAGCGTAAGAGCTCAGATGGATTGGCACTTAAAATTAAAGTA  949
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCATTAGGGTAAGAGCTCAGATGGATTGGCACTTAAAATTAAAGTA  906

seq1  TGCTTTAGAGGGTCCTAGGGATGCAAGCAAGGTCACATGTTGGTGTCAGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTAGAGGGTCCTAGGGATGCAAGCAAGGTCACATGTTGGTGTCAGC  956

seq1  AAAAGCCAAGGAGAAAACCAGCAGTATACCCACTAATTGTAAAGTGAGTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCAAGGAGAAAACCAGCAGTATACCCACTAATTGTAAAGTGAGTA  1006

seq1  TTGGGTAATCACACATAGTGTGTAAAGGAGAGACAGAAAAGAGAGATAAA  1099
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTGGGTAATCACACATAGTGTGTAAAGGACAGACAGAAAAGAGAGATAAA  1056

seq1  ACATTGATAGTGAGAAAAAGTGAGACAGGCATGAGCCAGAGAAGCAGGCA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGATAGTGAGAAAAAGTGAGACAGGCATGAGCCAGAGAAGCAGGCA  1106

seq1  AAGGTCCAATGAGAATGAATTC  1171
      ||||||||||||||||||||||
seq2  AAGGTCCAATGAGAATGAATTC  1128

seq1: chr8_56082882_56083922
seq2: B6Ng01-096C06.g_67_1105

seq1  GAATTCACTGTAGTGACTGACACATGGCAACCATCAAGTAATTGCTAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTAGTGACTGACACATGGCAACCATCAAGTAATTGCTAGCT  50

seq1  ATTGAAAGCATTTATTTTCCTTTTGTCTTGGGTTAACCAGAATATTTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAGCATTTATTTTCCTTTTGTCTTGGGTTAACCAGAATATTTAGA  100

seq1  TCATCTAGGAAGTCTACTGAATGACCTACAATCATTAGTTGCATATTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTAGGAAGTCTACTGAATGACCTACAATCATTAGTTGCATATTAAT  150

seq1  GGTATTATTTTTAATTAAAATTGTTGTTAAATTATTTTCCATTTCATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTATTTTTAATTAAAATTGTTGTTAAATTATTTTCCATTTCATTTG  200

seq1  CTCCTTCCAATCCCTCCTGTGCTGACCCTCTTTTGATCCTTCTCCAAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCCAATCCCTCCTGTGCTGACCCTCTTTTGATCCTTCTCCAAATC  250

seq1  ATGGCCTATTTTTTTTAGTTTTTATTGCTACATATATATGCAAAGAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTATTTTTTTTAGTTTTTATTGCTACATATATATGCAAAGAATTT  300

seq1  CTAAATATATACATACAACCTCCTCATTTTGTTTAGTGCTACTTGTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATATATACATACAACCTCCTCATTTTGTTTAGTGCTACTTGTTTGA  350

seq1  AAATAAAATAAATATATTTTTTTTAATTTACAGAAAAGTAATCCTGTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATAAATATATTTTTTTTAATTTACAGAAAAGTAATCCTGTCAA  400

seq1  TGGATTAAAAATCCATTTTCAATTTTGAAAGAAAGATATGTTTATGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTAAAAATCCATTTTCAATTTTGAAAGAAAGATATGTTTATGTTTT  450

seq1  CTTCACTTGTATCCTTTCTGTCACTCTAATAAAAAACTCTCAACAAATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTTGTATCCTTTCTGTCACTCTAATAAAAAACTCTCAACAAATTC  500

seq1  ATCTTAGAAAAGGAAAGGATATATTTGTATTAAATTTCTAGGTACTGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGAAAAGGAAAGGATATATTTGTATTAAATTTCTAGGTACTGCAG  550

seq1  TCCACCACTGAGGACTGTAAGTCAAGTTAAGCTAAAGATGCAAGGCAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCACTGAGGACTGTAAGTCAAGTTAAGCTAAAGATGCAAGGCAGGA  600

seq1  ACTTAAGGCAGAGACATGGAGGAATGATGCTTGTAAGGTGACTCTCTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGGCAGAGACATGGAGGAATGATGCTTGTAAGGTGACTCTCTGGC  650

seq1  TCACTCTTATTTTCCAAGCTTCATATTTTATTTTATTTTTAAACAGCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTTATTTTCCAAGCTTCATATTTTATTTTATTTTTAAACAGCTCT  700

seq1  TTATATTTGGATATCTATATTGTAACAAAAACTATTTTATATCCCTATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTGGATATCTATATTGTAACAAAAACTATTTTATATCCCTATTC  750

seq1  TTTACCCATTTTAAGTAACATACATCGAAGTAATTAGAAAAAAATCAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCATTTTAAGTAACATACATCGAAGTAATTAGAAAAAAATCAGAG  800

seq1  AGTTTGCAAATATGATAAAGAGGAGCTCCTTTCAATTAACTCATAGCAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCAAATATGATAAAGAGGAGCTCCTTTCAATTAACTCATAGCAAT  850

seq1  ATGAATTTCTGTTTTTATATTTCCTTTATCTGAAGTTTCCAAAGCACTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTTCTGTTTTTATATTTCCTTTATCTGAAGTTTCCAAAGCACTTT  900

seq1  CAAAGACTAGAACTATTACCAGTAGCTGTCAGGGGATAAAACACAGATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACTAGAACTATTACCAGTAGCTGTCAGGGGATAAAACACAGATAT  950

seq1  TCAAGAAGATCAACCAGATGTTGCCAGGAAAGTCTTCACTTAACCAGGGA  1000
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TC-AGAAGATCAACCAGATGTTGCCAGGAAAGTCTTCACTTAACCAGGGA  999

seq1  CAAGAGGTAGGAATGGGTGAGTAGGGGAGCAGGGCGGGGGA  1041
      ||||||||||| ||||||||||| |||||||||||||||||
seq2  CAAGAGGTAGG-ATGGGTGAGTAAGGGAGCAGGGCGGGGGA  1039