BAC Information

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BAC

Clone NameB6Ng01-096I10
Chromosome8 (Build37)
Map Location 131,171,161 - 131,336,188
singlet/doubletdoublet
Overlap geneItgb1, LOC100042659
Upstream geneNrp1, LOC668494
Downstream geneLOC100042667, Ccdc7, 1700008F21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096I10.bB6Ng01-096I10.g
ACCDH907153DH907154
length1,109945
definitionDH907153|Mus musculus domesticus DNA, BAC clone: B6Ng01-096I10, 5' end.DH907154|Mus musculus domesticus DNA, BAC clone: B6Ng01-096I10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,171,161 - 131,172,299)(131,335,251 - 131,336,188)
sequence
gaattcttctagaacaaatactccaagattcccttatattgttctgagag
gcaatttatgaattcctggttaacagcacagcatcaatttagataacagc
acaacatcaatttagatagctcttgccttttgcttctttctttcttttct
tttcttttcttcttttgttttcttttctttccttttttcttttttctttt
ttctttctttctttctttctttctttcttttttttttttttttgtgagtc
ttatacatctcaggatagcctcaaactcactacacagtcaaggacgacct
taaccttccggcactctcacctctacctacctgtccagggctaggatctc
aggaatgagtcaccacacccagtttatgcagtgctggggctagaacccag
agtttcacacatactagacaagcactgtagcagctgagccccaggtaatt
cgttattgaaagagtccagaactttatttcatgcggttttattgtcatgc
tctagtctcctgcttccattgcttcactagtaactgttgaaacctgagac
aagagatagctgtgagtactttcgtcaaaatgagagctctggagtcagaa
tatgggaaatgactcagtgttctggagtcagactcttaggacaaaacact
gactctacctccaggaaggctcttgggtgaggcactgaacctctctatgc
ctcagtttcctcctctggctggagagatagctgaggcatgaagtttgtat
catctataatcatctatttccttctcatttgcaactgtcccaggaaacag
cctcacctcatacattggtgtttggccatgtgacttacccaaatggcttc
aggaacagagaagacatttgcttcctccaaataaataggggatttcacag
tgtggaacattctcaccagcctctcatgatctgaccccatgctgagcatt
agcaactccaataaagcagtacttgagtgtgacaagagactgctgagcag
atccagatgagtcagtagtctgagaagtcagaaacatgtaatcctgatga
aaatagcaatacgtcactagtggtgcacatgctttaaggaaggcaggtgg
acttgagtt
gaattcatttgtgatttttgcatctagtagtatttgttttatgaaattgt
gtgtgtgttcagaattgctatatcctttttcttaactttccttcaaataa
gatttaattgatttttctgacagagcagtaaaattttactgctcaggagt
acttagccccgtatattttctaaggaaatttaaataggagtaagttttaa
atatataatttttggtgcttcctaggtggcgatcagtgttgcctctggat
gcatgtaaaacataaatacagtatgaatctgcaagagcccatcacaggca
aaataaaatgccatgatgtgaagatcaaactctcatgtcagagaatagca
tagacaaaacagcaagcagagaataaattctgtgttatcctgtaacaata
tccaacatttactaatcattaaattttatgtcctattttgtgtcttccat
aatttcaaattttaaattttttaccaacctcatgtaatggttctattatt
aatgtctatagatgaagaagtagagacattacacaacacataataatatc
ctaagaatataatggaagaggtaatacatagcaaaggctatgagtgtccc
tacaatatttatttttgttgtttacttttgagaatgtaatttaattacag
tgtttctccttttctttttcctttcttcaaacttcccatatgccccctcc
cagctctcctttcgaatccatggcctcttttagtcattaattgttattga
gtgtatgtatgtatttgtatataccaccccctcttctgcaatattccctg
tgccttaggtgtgagagtgttttgtatccattgggactgggtctccacac
tcttgcatcttgattggttgcttttttgtagttgtctctgttgcaaacaa
atttcccttgagaaaggttgaaggcaacacttaagatggcttatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_131171161_131172299
seq2: B6Ng01-096I10.b_43_1151

seq1  GAATTCTTCTAGAACAAATACTCCAAGATTCCCTTATATTGTTCTGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTAGAACAAATACTCCAAGATTCCCTTATATTGTTCTGAGAG  50

seq1  GCAATTTATGAATTCCTGGTTAACAGCACAGCATCAATTTAGATAACAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTATGAATTCCTGGTTAACAGCACAGCATCAATTTAGATAACAGC  100

seq1  ACAACATCAATTTAGATAGCTCTTGCCTTTTGCTTCTTTCTTTCTTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATCAATTTAGATAGCTCTTGCCTTTTGCTTCTTTCTTTCTTTTCT  150

seq1  TTTCTTTTCTTCTTTTGTTTTCTTTTCTTTCCTTTTTTCTTTTTTCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTCTTCTTTTGTTTTCTTTTCTTTCCTTTTTTCTTTTTTCTTTT  200

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTGTGAGT  250
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTCTTTC-TTTTTTTTTTTTTTTTGTGAGT  249

seq1  CTTATACATCTCAGGATAGCCTCAAACTCACTACACAGTCAAGGACGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATACATCTCAGGATAGCCTCAAACTCACTACACAGTCAAGGACGACC  299

seq1  TTAACCTTCCGGCACTCTCACCTCTACCTACCTGTCCAGGGCTAGGATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCTTCCGGCACTCTCACCTCTACCTACCTGTCCAGGGCTAGGATCT  349

seq1  CAGGAATGAGTCACCACACCCAGTTTATGCAGTGCTGGGGCTAGAACCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATGAGTCACCACACCCAGTTTATGCAGTGCTGGGGCTAGAACCCA  399

seq1  GAGTTTCACACATACTAGACAAGCACTGTAGCAGCTGAGCCCCAGGTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCACACATACTAGACAAGCACTGTAGCAGCTGAGCCCCAGGTAAT  449

seq1  TCGTTATTGAAAGAGTCCAGAACTTTATTTCATGCGGTTTTATTGTCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTATTGAAAGAGTCCAGAACTTTATTTCATGCGGTTTTATTGTCATG  499

seq1  CTCTAGTCTCCTGCTTCCATTGCTTCACTAGTAACTGTTGAAACCTGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGTCTCCTGCTTCCATTGCTTCACTAGTAACTGTTGAAACCTGAGA  549

seq1  CAAGAGATAGCTGTGAGTACTTTCGTCAAAATGAGAGCTCTGGAGTCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGATAGCTGTGAGTACTTTCGTCAAAATGAGAGCTCTGGAGTCAGA  599

seq1  ATATGGGAAATGACTCAGTGTTCTGGAGTCAGACTCTTAGGACAAAACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGGAAATGACTCAGTGTTCTGGAGTCAGACTCTTAGGACAAAACAC  649

seq1  TGACTCTACCTCCAGGAAGGCTCTTGGGTGAGGCACTGAACCTCTCTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTACCTCCAGGAAGGCTCTTGGGTGAGGCACTGAACCTCTCTATG  699

seq1  CCTCAGTTTCCTCCTCTGGCTGGAGAGATAGCTGAGGCATGAAGTTTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTTTCCTCCTCTGGCTGGAGAGATAGCTGAGGCATGAAGTTTGTA  749

seq1  TCATCTATAATCATCTATTTCCTTCTCATTTGCAACTGTCCCAGGAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTATAATCATCTATTTCCTTCTCATTTGCAACTGTCCCAGGAAACA  799

seq1  GCCTCACCTCATACATTGGTGTTTGGCCATGTGACTTACCCAAATGGC-T  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCCTCACCTCATACATTGGTGTTTGGCCATGTGACTTACCCAAATGGCTT  849

seq1  CAGGAACAGAGAAGACATTTGCTTCCTCCAAATAAATAGGGGATTTCACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACAGAGAAGACATTTGCTTCCTCCAAATAAATAGGGGATTTCACA  899

seq1  GGTGTGGAACATTCTCACCAGCCTCTCATGATCTGACCCCCATGCTGAGG  949
       ||||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  -GTGTGGAACATTCTCACCAGCCTCTCATGATCTGA-CCCCATGCTGAG-  946

seq1  CCATTAGCAACTCCAATAAAGCAGTACCTTGAGTGTGGACAAGGAGACTG  999
       ||||||||||||||||||||||||| ||||||||| ||||| |||||||
seq2  -CATTAGCAACTCCAATAAAGCAGTA-CTTGAGTGT-GACAA-GAGACTG  992

seq1  CTGGAGCAGATCCAAGATGAGTCAGTAGTTCTGAGAAGGTCCAGAAACAT  1049
      || |||||||||| |||||||||||||| |||||||||   |||||||| 
seq2  CT-GAGCAGATCC-AGATGAGTCAGTAG-TCTGAGAAG--TCAGAAACA-  1036

seq1  TGTAATTCCCTGAATTGAAAATAGCAAATAAGGGTCACTAGGTGGTGTTG  1099
      ||||||  |||||  |||||||||| ||||   ||||||| |||||    
seq2  TGTAAT--CCTGA--TGAAAATAGC-AATA--CGTCACTA-GTGGT----  1074

seq1  GCACATGCCTTTAAAGGAAAGGCAGGTGGATCTTTGAGTT  1139
      ||||||| ||||||  | ||||||||||||   |||||||
seq2  GCACATG-CTTTAA--GGAAGGCAGGTGGA--CTTGAGTT  1109

seq1: chr8_131335251_131336188
seq2: B6Ng01-096I10.g_69_1013 (reverse)

seq1  GATAAG-CATC-TAAGTGTTGCCTTC-ACCTTTCTCAAGGAAACTTTGTT  47
      |||||| |||| |||||||||||||| ||||||||||||| || ||||||
seq2  GATAAGCCATCTTAAGTGTTGCCTTCAACCTTTCTCAAGGGAAATTTGTT  50

seq1  TGCAACAGAGACAACTACAAAAAAGCAACCAATCAAGATGCAAGAGTGTG  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACAGAGACAACTACAAAAAAGCAACCAATCAAGATGCAAGAGTGTG  100

seq1  GAGA-CCAGTCCCAATGGATACAAAACACTCTCACACCTAAGGCACAGGG  146
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCAGTCCCAATGGATACAAAACACTCTCACACCTAAGGCACAGGG  150

seq1  AATATTGCAGAAGAGGGGGTGGTATATACAAATACATACATACACTCAAT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGCAGAAGAGGGGGTGGTATATACAAATACATACATACACTCAAT  200

seq1  AACAATTAATGACT-AAAGAGGCCATGGATTCG-AAGGAGAGCTGGGAGG  244
      |||||||||||||| |||||||||||||||||| ||||||||||||||||
seq2  AACAATTAATGACTAAAAGAGGCCATGGATTCGAAAGGAGAGCTGGGAGG  250

seq1  GGGCATATGGGAAGTTTGAAGAAAGGAAAAAG-AAAGGAGAAACACTGTA  293
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGGCATATGGGAAGTTTGAAGAAAGGAAAAAGAAAAGGAGAAACACTGTA  300

seq1  ATTAAATTACATTCTCAAAAGTAAACAACAAAAATAAATATTGTAGGGAC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATTACATTCTCAAAAGTAAACAACAAAAATAAATATTGTAGGGAC  350

seq1  ACTCATAGCCTTTGCTATGTATTACCTCTTCCATTATATTCTTAGGATAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATAGCCTTTGCTATGTATTACCTCTTCCATTATATTCTTAGGATAT  400

seq1  TATTATGTGTTGTGTAATGTCTCTACTTCTTCATCTATAGACATTAATAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGTGTTGTGTAATGTCTCTACTTCTTCATCTATAGACATTAATAA  450

seq1  TAGAACCATTACATGAGGTTGGTAAAAAATTTAAAATTTGAAATTATGGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACCATTACATGAGGTTGGTAAAAAATTTAAAATTTGAAATTATGGA  500

seq1  AGACACAAAATAGGACATAAAATTTAATGATTAGTAAATGTTGGATATTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAAAATAGGACATAAAATTTAATGATTAGTAAATGTTGGATATTG  550

seq1  TTACAGGATAACACAGAATTTATTCTCTGCTTGCTGTTTTGTCTATGCTA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGATAACACAGAATTTATTCTCTGCTTGCTGTTTTGTCTATGCTA  600

seq1  TTCTCTGACATGAGAGTTTGATCTTCACATCATGGCATTTTATTTTGCCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGACATGAGAGTTTGATCTTCACATCATGGCATTTTATTTTGCCT  650

seq1  GTGATGGGCTCTTGCAGATTCATACTGTATTTATGTTTTACATGCATCCA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGGCTCTTGCAGATTCATACTGTATTTATGTTTTACATGCATCCA  700

seq1  GAGGCAACACTGATCGCCACCTAGGAAGCACCAAAAATTATATATTTAAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAACACTGATCGCCACCTAGGAAGCACCAAAAATTATATATTTAAA  750

seq1  ACTTACTCCTATTTAAATTTCCTTAGAAAATATACGGGGCTAAGTACTCC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTCCTATTTAAATTTCCTTAGAAAATATACGGGGCTAAGTACTCC  800

seq1  TGAGCAGTAAAATTTTACTGCTCTGTCAGAAAAATCAATTAAATCTTATT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGTAAAATTTTACTGCTCTGTCAGAAAAATCAATTAAATCTTATT  850

seq1  TGAAGGAAAGTTAAGAAAAAGGATATAGCAATTCTGAACACACACACAAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAAAGTTAAGAAAAAGGATATAGCAATTCTGAACACACACACAAT  900

seq1  TTCATAAAACAAATACTACTAGATGCAAAAATCACAAATGAATTC  938
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAAACAAATACTACTAGATGCAAAAATCACAAATGAATTC  945