BAC Information

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BAC

Clone NameB6Ng01-096K16
Chromosome8 (Build37)
Map Location 17,682,717 - 17,806,126
singlet/doubletdoublet
Overlap genenone
Upstream geneCsmd1
Downstream geneLOC665638, LOC100040466, Mcph1, Angpt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096K16.bB6Ng01-096K16.g
ACCDH907251DH907252
length1,1531,167
definitionDH907251|Mus musculus domesticus DNA, BAC clone: B6Ng01-096K16, 5' end.DH907252|Mus musculus domesticus DNA, BAC clone: B6Ng01-096K16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,804,966 - 17,806,126)(17,682,717 - 17,683,904)
sequence
gaattctttgaagaacagtcttcagtatatgccatgtttattgtaaccac
aaacccacagcaactgatgttacctaaacaatgacactccaccaaggatg
ggaagataatcatgaattgtattgactaatcttattttgacataaggatt
taagcaaagaagttaatataggggactgactgggttttatctgggtcatt
cggtttcagaatctttgatatagcttttggagccatttcccctctggcca
gaatttaaaatgataagggaacaaaggagtgggcaagctgcacatagtca
actaaatcaagataatcaacacatttatgatgtgtgtcttagtttagaca
atgggattatagcaacttccttctttacatcctttactggcaaaaaaaca
aaaacaaacaaacaaacaaaaatccaaaacatcaactacttgatataatg
agttggttctctggtctgggaacatgcactaagttttgaccctgtcagca
agatggtacttgtttctgagatggctggacccagggaattttctcataac
agatcaaaacatattttctgtatgtgtaaaactgttattaaaagattcat
agtgaagaactctgctgtaagcattcagggctgttgtaaattcccataca
attgcagatccagaaataaaaattgcccattctcaaatcactatggagat
gttaaaaactctagtactgataatattaatgtcaataaaattaaaataac
acttattttgggacttcagttgcaaagcaaagcctctcctgagacagtcc
cttttccacttttctgattatttatcatgttttatatgtttttatcatca
tacagcagaatcaatggttccatagattagtaaaaatcctcatttaacca
atgtttaagtcacaaatatgaaaacaaattatacttgatgatcgatattt
cattgtgaacctcagtccagtgtagctctgtcagtgtgtaaatgtgtttt
atcattcaatacctttcttagaagtaaagctatgtggttgtgaagactgt
cattattttagtgagtaaagtccaggtcagatgtacttactctatacatt
tactgaaacaattcttgccttctttattctgaattttatgttctggcttt
aat
gaattcacattaaagggcaatctcataacaatgcataaattcctttcagt
gaaaacaaattcttcatatttcctttatagctgatatcaaaactctggaa
agaaataatacaaatctctttctgatacaaaacattccagaaaaagaaat
acaaacacaagagggaaatgatgtagccatctgatgtttttcactacttg
taattgagactttagacatgcaaaattaaaagtaaaagtgtattcatttg
taaaaggttaccttgaagtactgtacaacttttgtgggcactgacgagtg
tggtctttgcttccactcattttaaagaagaagtttcacacaacggtaga
aaaatttgtatgctacataatttacagtagagcactgaaatggcttttag
catttctaacactaattggtgtttttttgtttattacaacatgtaatata
tgcttctcatttgaagtgtgtgacataagattgtgtgactcactaagcaa
tgctgttgtttgagagacagttgtcttctctgaggtcacaattcccttca
gttagtgaaagacagaatgtcttactgctggtacctatggccccaaatga
gttatcatggttttgttaagtgaacattttcctcttagtaacctatagtt
taaaaggaaaagacagatgtattttgtggaaaacgaggacacttccaaaa
aattcaggttcttcaaagaatcaagaacaaagacccactcagctaactct
tagaatgagcaccatggggtatggatagccaagattactagcagcagata
ctggcagaacttcattctagtcattagtctacataaatggaagcttgtga
agtttgtcaggaaatacatagtgtgtgctaactgtttctaagagcctcgt
tgttctagcctgctttgaagtcaaggcaccaaggaagaaagaacagcaag
ggctagacaaaaggtatatttctctagaaccaactagcagatgggaggtt
tacagctgtacagaattctgtccttcccctgtccccatcacacccgtctc
tctctctgctctttcttcttaaagagcctttcctctgaatgatctgactt
gccttgaatttctagtagctcctggagtgactatcttcaaggctcgatgc
aacttggccttagcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_17804966_17806126
seq2: B6Ng01-096K16.b_46_1198 (reverse)

seq1  ATTAAAAACCCAG-ACATAAAATATCAGAATAAAAGAAGC-AGAATTGTG  48
      |||  ||| |||| ||||||||| ||||||||||  | || |||||||| 
seq2  ATT--AAAGCCAGAACATAAAAT-TCAGAATAAAGAAGGCAAGAATTGTT  47

seq1  TCAGTTAAATGTATAGGAAGTAAGTACAATTCTGACCTGGACTTTACTCA  98
      |||| |||||||||||  ||||||||||  ||||||||||||||||||||
seq2  TCAG-TAAATGTATAG--AGTAAGTACA--TCTGACCTGGACTTTACTCA  92

seq1  CTAAAATAATGAACAGTC-TCACAACCACATAGCTTTACTTCTAAGAAAG  147
      ||||||||||| |||||| |||||||||||||||||||||||||||||||
seq2  CTAAAATAATG-ACAGTCTTCACAACCACATAGCTTTACTTCTAAGAAAG  141

seq1  GTATTGAATGAATAAAACACATTTACACACCTGACAGAGCTACACTGGAC  197
      |||||||||| |||||||||||||||||| ||||||||||||||||||||
seq2  GTATTGAATG-ATAAAACACATTTACACA-CTGACAGAGCTACACTGGAC  189

seq1  TGAGGTTCACAATGAAATATCGATCATCAAGTATAATTTGTTTTCATATT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTCACAATGAAATATCGATCATCAAGTATAATTTGTTTTCATATT  239

seq1  TGTGACTTAAACATTGGTTAAATGAGGATTTTTACTAATCTATGGAACCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTTAAACATTGGTTAAATGAGGATTTTTACTAATCTATGGAACCA  289

seq1  TTGATTCTGCTGTATGATGATAAAAACATATAAAACATGATAAATAATCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTCTGCTGTATGATGATAAAAACATATAAAACATGATAAATAATCA  339

seq1  GAAAAGTGGAAAAGGGACTGTCTCAGGAGAGGCTTTGCTTTGCAACTGAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTGGAAAAGGGACTGTCTCAGGAGAGGCTTTGCTTTGCAACTGAA  389

seq1  GTCCCAAAATAAGTGTTATTTTAATTTTATTGACATTAATATTATCAGTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAAAATAAGTGTTATTTTAATTTTATTGACATTAATATTATCAGTA  439

seq1  CTAGAGTTTTTAACATCTCCATAGTGATTTGAGAATGGGCAATTTTTATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGTTTTTAACATCTCCATAGTGATTTGAGAATGGGCAATTTTTATT  489

seq1  TCTGGATCTGCAATTGTATGGGAATTTACAACAGCCCTGAATGCTTACAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATCTGCAATTGTATGGGAATTTACAACAGCCCTGAATGCTTACAG  539

seq1  CAGAGTTCTTCACTATGAATCTTTTAATAACAGTTTTACACATACAGAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTCTTCACTATGAATCTTTTAATAACAGTTTTACACATACAGAAA  589

seq1  ATATGTTTTGATCTGTTATGAGAAAATTCCCTGGGTCCAGCCATCTCAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTTTGATCTGTTATGAGAAAATTCCCTGGGTCCAGCCATCTCAGA  639

seq1  AACAAGTACCATCTTGCTGACAGGGTCAAAACTTAGTGCATGTTCCCAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTACCATCTTGCTGACAGGGTCAAAACTTAGTGCATGTTCCCAGA  689

seq1  CCAGAGAACCAACTCATTATATCAAGTAGTTGATGTTTTGGATTTTTGTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAACCAACTCATTATATCAAGTAGTTGATGTTTTGGATTTTTGTT  739

seq1  TGTTTGTTTGTTTTTGTTTTTTTGCCAGTAAAGGATGTAAAGAAGGAAGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTTTGTTTTTTTGCCAGTAAAGGATGTAAAGAAGGAAGT  789

seq1  TGCTATAATCCCATTGTCTAAACTAAGACACACATCATAAATGTGTTGAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATAATCCCATTGTCTAAACTAAGACACACATCATAAATGTGTTGAT  839

seq1  TATCTTGATTTAGTTGACTATGTGCAGCTTGCCCACTCCTTTGTTCCCTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGATTTAGTTGACTATGTGCAGCTTGCCCACTCCTTTGTTCCCTT  889

seq1  ATCATTTTAAATTCTGGCCAGAGGGGAAATGGCTCCAAAAGCTATATCAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTAAATTCTGGCCAGAGGGGAAATGGCTCCAAAAGCTATATCAA  939

seq1  AGATTCTGAAACCGAATGACCCAGATAAAACCCAGTCAGTCCCCTATATT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTGAAACCGAATGACCCAGATAAAACCCAGTCAGTCCCCTATATT  989

seq1  AACTTCTTTGCTTAAATCCTTATGTCAAAATAAGATTAGTCAATACAATT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTTTGCTTAAATCCTTATGTCAAAATAAGATTAGTCAATACAATT  1039

seq1  CATGATTATCTTCCCATCCTTGGTGGAGTGTCATTGTTTAGGTAACATCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTATCTTCCCATCCTTGGTGGAGTGTCATTGTTTAGGTAACATCA  1089

seq1  GTTGCTGTGGGTTTGTGGTTACAATAAACATGGCATATACTGAAGACTGT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGTGGGTTTGTGGTTACAATAAACATGGCATATACTGAAGACTGT  1139

seq1  TCTTCAAAGAATTC  1161
      ||||||||||||||
seq2  TCTTCAAAGAATTC  1153

seq1: chr8_17682717_17683904
seq2: B6Ng01-096K16.g_68_1234

seq1  GAATTCACATTAAAGGGCAATCTCATAACAATGCATAAATTCCTTTCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTAAAGGGCAATCTCATAACAATGCATAAATTCCTTTCAGT  50

seq1  GAAAACAAATTCTTCATATTTCCTTTATAGCTGATATCAAAACTCTGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAAATTCTTCATATTTCCTTTATAGCTGATATCAAAACTCTGGAA  100

seq1  AGAAATAATACAAATCTCTTTCTGATACAAAACATTCCAGAAAAAGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAATACAAATCTCTTTCTGATACAAAACATTCCAGAAAAAGAAAT  150

seq1  ACAAACACAAGAGGGAAATGATGTAGCCATCTGATGTTTTTCACTACTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACACAAGAGGGAAATGATGTAGCCATCTGATGTTTTTCACTACTTG  200

seq1  TAATTGAGACTTTAGACATGCAAAATTAAAAGTAAAAGTGTATTCATTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGAGACTTTAGACATGCAAAATTAAAAGTAAAAGTGTATTCATTTG  250

seq1  TAAAAGGTTACCTTGAAGTACTGTACAACTTTTGTGGGCACTGACGAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGTTACCTTGAAGTACTGTACAACTTTTGTGGGCACTGACGAGTG  300

seq1  TGGTCTTTGCTTCCACTCATTTTAAAGAAGAAGTTTCACACAACGGTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTTGCTTCCACTCATTTTAAAGAAGAAGTTTCACACAACGGTAGA  350

seq1  AAAATTTGTATGCTACATAATTTACAGTAGAGCACTGAAATGGCTTTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTGTATGCTACATAATTTACAGTAGAGCACTGAAATGGCTTTTAG  400

seq1  CATTTCTAACACTAATTGGTGTTTTTTTGTTTATTACAACATGTAATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTAACACTAATTGGTGTTTTTTTGTTTATTACAACATGTAATATA  450

seq1  TGCTTCTCATTTGAAGTGTGTGACATAAGATTGTGTGACTCACTAAGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTCATTTGAAGTGTGTGACATAAGATTGTGTGACTCACTAAGCAA  500

seq1  TGCTGTTGTTTGAGAGACAGTTGTCTTCTCTGAGGTCACAATTCCCTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTGTTTGAGAGACAGTTGTCTTCTCTGAGGTCACAATTCCCTTCA  550

seq1  GTTAGTGAAAGACAGAATGTCTTACTGCTGGTACCTATGGCCCCAAATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGAAAGACAGAATGTCTTACTGCTGGTACCTATGGCCCCAAATGA  600

seq1  GTTATCATGGTTTTGTTAAGTGAACATTTTCCTCTTAGTAACCTATAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCATGGTTTTGTTAAGTGAACATTTTCCTCTTAGTAACCTATAGTT  650

seq1  TAAAAGGAAAAGACAGATGTATTTTGTGGAAAACGAGGACACTTCCAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGAAAAGACAGATGTATTTTGTGGAAAACGAGGACACTTCCAAAA  700

seq1  AATTCAGGTTCTTCAAAGAATCAAGAACAAAGACCCACTCAGCTAACTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGGTTCTTCAAAGAATCAAGAACAAAGACCCACTCAGCTAACTCT  750

seq1  TAGAATGAGCACCATGGGGTATGGATAGCCAAGATTACTAGCAGCAGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGAGCACCATGGGGTATGGATAGCCAAGATTACTAGCAGCAGATA  800

seq1  CTGGCAGAACTTCATTCTAGTCATTAGTCTACATAAATGGAAGCTTGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGAACTTCATTCTAGTCATTAGTCTACATAAATGGAAGCTTGTGA  850

seq1  AGTTTGTCAGGAAATACATAGTGTGTGCTAACTGTTTCTAAGAGCCTCGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTCAGGAAATACATAGTGTGTGCTAACTGTTTCTAAGAGCCTCGT  900

seq1  TGTTCTAGCCTGCCTTGAAGTCAAGGCACCAAGGAAGAAAGAACAGCAAG  950
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGTTCTAGCCTGCTTTGAAGTCAAGGCACCAAGGAAGAAAGAACAGCAAG  950

seq1  GGCTAGAACAAAAGGTATATTCCTCTAGAACACACTAGCAGATGGGAGGT  1000
      |||||| |||||||||||||| |||||||||  |||||||||||||||||
seq2  GGCTAG-ACAAAAGGTATATTTCTCTAGAACCAACTAGCAGATGGGAGGT  999

seq1  TTACAGCTGTACAGAATTCTGTCCCTTCCCCTGTCCCCCATCACACCCCC  1050
      |||||||||||||||||||||| ||||||||||| |||||||||||    
seq2  TTACAGCTGTACAGAATTCTGT-CCTTCCCCTGT-CCCCATCACAC----  1043

seq1  GCCCTCTCTCTCCTGGCTCTTTCTTCTTAAAGGAGCCCTTTTCCCTCTGA  1100
       || ||||||||   |||||||||||||||| |||||   || |||||||
seq2  -CCGTCTCTCTCTCTGCTCTTTCTTCTTAAA-GAGCC---TTTCCTCTGA  1088

seq1  ATGATCTGAACTGCCTTTGTAATTTCCTTAAGTTAGCTCCTTGAGTGACT  1150
      |||||||||  ||||||   ||||||  ||   |||||||| ||||||||
seq2  ATGATCTGACTTGCCTT--GAATTTC--TA--GTAGCTCCTGGAGTGACT  1132

seq1  ATCTTCAGTGCTCAGATGCAAAACTTTGGCTTAGCATC  1188
      |||||||  |||| |||||  ||||| | |||||||||
seq2  ATCTTCAAGGCTC-GATGC--AACTTGGCCTTAGCATC  1167