BAC Information

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BAC

Clone NameB6Ng01-099C05
Chromosome8 (Build37)
Map Location 94,839,191 - 94,999,780
singlet/doubletdoublet
Overlap gene4933436C20Rik, Irx5
Upstream geneAJ237917, LOC100041254, LOC674324, LOC100040628, Irx3
Downstream geneIrx6, LOC100041325, Mmp2, Aytl1, Capns2, LOC100040752, Slc6a2, EG244595, LOC382044, Es1, LOC676523, Ces3, Es22, AU018778, Ces1, 2310039D24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099C05.bB6Ng01-099C05.g
ACCDH909015DH909016
length1,2201,116
definitionDH909015|Mus musculus domesticus DNA, BAC clone: B6Ng01-099C05, 5' end.DH909016|Mus musculus domesticus DNA, BAC clone: B6Ng01-099C05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,998,547 - 94,999,780)(94,839,191 - 94,840,323)
sequence
gaattcctaagacatgtgtgttttcacgaagcaaccctgggcctacaggt
aaacgcagccgtgcttggtcttttacctaggtgttggcaaattaatctca
ggtccttgtgtttgtatagcaaatgttttagccactaagccatctctctg
gccccagagtagtaagtctgaacaagaatttcacaggagcgaaacacaag
gatagacctcatgtgtcagaatgatgcagaccgaacttctagagaggcaa
gaggagcagacgtcaggcaagatggagtcgggagcagtggcattagcatt
agcaaccttcctaatgctgtgaccctttaatacagttgctcatgctgtgg
tgacaccccaaccttaaaattgtttcattgctacttcatatctgtaattt
tattgctgttatgaatcataatgcaaaatatcttatatgcaggatatctg
acatgggaccccaaaggggtcatgacctacagattgagaggtctagagaa
atgttccttaaactcctttcacacaggatccctttgcacctgagaaatag
tacacaactctagatatatgagtgcatgaagtagacacacaaataaaaca
tttactgttgataaaccataaagagacctactttaaaacaattttgacac
acatatgaatttgtccctgacctaaggcagtgaggggcttccaaggtaca
agtctttcctggaggccaaggcccctggactctggctttcttttgctgtg
taagagtttgcctggggcagttcacgtgtttcaaaacaggcctgggcaca
tgtaacactaaagcatgaagaactgggtagcaagttaacccatcgaagac
agagcaaatgtcctgggactgcctgaatggaacccagctgtgtgtgacgc
caggaagttggccttggtttgtgttggatgcctcacacccaccatggtaa
cgggactggctttttatttgtctcacaggaagatagggggagtggtgctg
cctgaggtggcttcacaacagcctctggccagagcaagcatccatggtct
cgtgagcagcacaggccacaggactcatgggagttcttgagcaggcaact
accctgggagactgggaaaagaaagctgactgtagaagatggacctctct
ctctgtctgaaccacagcctagaaaattagcatctctccacatgcgagaa
gctgctattgtaaattgctt
gaattctctgctcataagacagcccagcctgtgtatgtggacaggaacac
aaaccatccactcttggggaacaagaagagccggtcacaagtcacctggt
cactatcctcccagaagcaagcaaatttcttttgttttccattactcgta
gtagggttaaagcagtggtagaggaaagtcttggataaagattcaccatc
atttggatattcattaatccgcccaccactagggtatggctggtagactg
gtaaggagagagaaatcagagaacattctagtgtgatgggtacactggtc
cactttagggacatgaagcaccgtgaacttcagacctccgacatgtccta
gccaagcagtaatagaagaaaagataacagggtctttgcagtcttggact
gagatgcaagtcctacaccagtgtcattggaatcatggccaggtgacttc
tctctgaacctcacgatatgagtcaggataggcaaggctatgctccagta
gccagcaaacttctgcttgcccgtggttatatgaagtacaggtttagtct
ctcacataaagccctctgtagatgtcagaactaagtggctactctccctg
tggctactttcagcagggagaaggaagagaggtggtggatattcgtttac
tactgaccaaaactgatcaggtagtccccaactatctattcccacataag
ggtgtctgggaatgagatcttcggaaccactgaaaacaaaagcaaaaggg
ggctgtacaacaaaactgggctattgctgccacatttaatgttctcatct
gcaaggcgaggcaatgcccacattacagtgtgaaggtttcagaaggatcc
atgaaagaggcataaaacacaataatcagtcaacacacactgtcactgtc
actgaagccaagggctcctcatttgctgggcccttggatgaattagtcag
attctccaaagaacagaactgaaagataattatacatatgcatataaaat
ttgtaaatggcttatatactatagtaacaatagctgtctcacaccctgaa
agcaaagagtgtgcaactgcagtctctgagctgacctcaagtcagtccct
gagagactcagctgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_94998547_94999780
seq2: B6Ng01-099C05.b_49_1268 (reverse)

seq1  AAGCAA-TTCCACTAGCAGCTTCCTGC-TGTTGGAAGATGCCCTAA-TTC  47
      |||||| || || ||||||||||  || ||| |  |||||  |||| || 
seq2  AAGCAATTTACAATAGCAGCTTCTCGCATGTGGAGAGATG--CTAATTTT  48

seq1  CTAGGCTGCTGCTCTCAG-CAGAGAGAG-GTTTCAACTCTCTACAGCTCA  95
      |||||||| || | |||| ||||||||| | | || || ||||||| |||
seq2  CTAGGCTG-TGGT-TCAGACAGAGAGAGAGGTCCATCT-TCTACAG-TCA  94

seq1  GCCTTTCTCTCTCCCAGTTCCTCCCAGGGTTAGTTTGCCTGGCTTCCAGG  145
      | |||||| | |||||||  ||||||||| ||| |||||| |||  || |
seq2  G-CTTTCT-TTTCCCAGT--CTCCCAGGG-TAG-TTGCCT-GCT--CAAG  135

seq1  AACTCCCATGAGTCCCTGTGGCCTGTGGCTGCCTCACGAGGACCCTGGAT  195
      ||||||||||||| |||||||||||| |||| ||||||| |||| |||||
seq2  AACTCCCATGAGT-CCTGTGGCCTGT-GCTG-CTCACGA-GACCATGGAT  181

seq1  GCTTGCTCTGGCCAGAGGCTGTTTGTGGAGCCACCTCAGGCAGCA-CACT  244
      ||||||||||||||||||||| ||||| ||||||||||||||||| ||||
seq2  GCTTGCTCTGGCCAGAGGCTG-TTGTGAAGCCACCTCAGGCAGCACCACT  230

seq1  -CCCCTATCTTCCTGTGAAGACAAAT-AAAAGCCAGTCCCGTTACCATGG  292
       |||||||||||||||| |||||||| |||||||||||||||||||||||
seq2  CCCCCTATCTTCCTGTG-AGACAAATAAAAAGCCAGTCCCGTTACCATGG  279

seq1  TGGGTTGTGAGGCATCCAACACAAACCAAGGCCACCTTCCTGGCGTCAAC  342
      |||| ||||||||||||||||||||||||||||| |||||||||||| ||
seq2  TGGG-TGTGAGGCATCCAACACAAACCAAGGCCAACTTCCTGGCGTC-AC  327

seq1  ACACAGCTGGGTTCCATTCAGGCAGTCCCAGGACATTTGCTCTGTCTTCG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCTGGGTTCCATTCAGGCAGTCCCAGGACATTTGCTCTGTCTTCG  377

seq1  ATGGGTTAACTTGCTACCCAGTTCTTCATGCTTTAGTGTTACATGTGCCC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTAACTTGCTACCCAGTTCTTCATGCTTTAGTGTTACATGTGCCC  427

seq1  AGGCCTGTTTTGAAACACGTGAACTGCCCCAGGC-AACTCTTACACAGCA  491
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGGCCTGTTTTGAAACACGTGAACTGCCCCAGGCAAACTCTTACACAGCA  477

seq1  AAAGAAAGCCAGAGTCCAGGGGCCTTGGCCTCCAGGAAAGACTTGTACCT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGCCAGAGTCCAGGGGCCTTGGCCTCCAGGAAAGACTTGTACCT  527

seq1  TGGAAGCCCCTCACTGCCTTAGGTCAGGGACAAATTCATATGTGTGTCAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCCCCTCACTGCCTTAGGTCAGGGACAAATTCATATGTGTGTCAA  577

seq1  AATTGTTTTAAAGTAGGTCTCTTTATGGTTTATCAACAGTAAATGTTTTA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTTTAAAGTAGGTCTCTTTATGGTTTATCAACAGTAAATGTTTTA  627

seq1  TTTGTGTGTCTACTTCATGCACTCATATATCTAGAGTTGTGTACTATTTC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTGTCTACTTCATGCACTCATATATCTAGAGTTGTGTACTATTTC  677

seq1  TCAGGTGCAAAGGGATCCTGTGTGAAAGGAGTTTAAGGAACATTTCTCTA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGCAAAGGGATCCTGTGTGAAAGGAGTTTAAGGAACATTTCTCTA  727

seq1  GACCTCTCAATCTGTAGGTCATGACCCCTTTGGGGTCCCATGTCAGATAT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTCAATCTGTAGGTCATGACCCCTTTGGGGTCCCATGTCAGATAT  777

seq1  CCTGCATATAAGATATTTTGCATTATGATTCATAACAGCAATAAAATTAC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATATAAGATATTTTGCATTATGATTCATAACAGCAATAAAATTAC  827

seq1  AGATATGAAGTAGCAATGAAACAATTTTAAGGTTGGGGTGTCACCACAGC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATGAAGTAGCAATGAAACAATTTTAAGGTTGGGGTGTCACCACAGC  877

seq1  ATGAGCAACTGTATTAAAGGGTCACAGCATTAGGAAGGTTGCTAATGCTA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCAACTGTATTAAAGGGTCACAGCATTAGGAAGGTTGCTAATGCTA  927

seq1  ATGCCACTGCTCCCGACTCCATCTTGCCTGACGTCTGCTCCTCTTGCCTC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCACTGCTCCCGACTCCATCTTGCCTGACGTCTGCTCCTCTTGCCTC  977

seq1  TCTAGAAGTTCGGTCTGCATCATTCTGACACATGAGGTCTATCCTTGTGT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAGTTCGGTCTGCATCATTCTGACACATGAGGTCTATCCTTGTGT  1027

seq1  TTCGCTCCTGTGAAATTCTTGTTCAGACTTACTACTCTGGGGCCAGAGAG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCTCCTGTGAAATTCTTGTTCAGACTTACTACTCTGGGGCCAGAGAG  1077

seq1  ATGGCTTAGTGGCTAAAACATTTGCTATACAAACACAAGGACCTGAGATT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTAGTGGCTAAAACATTTGCTATACAAACACAAGGACCTGAGATT  1127

seq1  AATTTGCCAACACCTAGGTAAAAGACCAAGCACGGCTGCGTTTACCTGTA  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCCAACACCTAGGTAAAAGACCAAGCACGGCTGCGTTTACCTGTA  1177

seq1  GGCCCAGGGTTGCTTCGTGAAAACACACATGTCTTAGGAATTC  1234
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGGGTTGCTTCGTGAAAACACACATGTCTTAGGAATTC  1220

seq1: chr8_94839191_94840323
seq2: B6Ng01-099C05.g_67_1182

seq1  GAATTCTCTGCTCATAAGACAGCCCAGCCTGTGTATGTGGACAGGAACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCTCATAAGACAGCCCAGCCTGTGTATGTGGACAGGAACAC  50

seq1  AAACCATCCACTCTTGGGGAACAAGAAGAGCCGGTCACAAGTCACCTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATCCACTCTTGGGGAACAAGAAGAGCCGGTCACAAGTCACCTGGT  100

seq1  CACTATCCTCCCAGAAGCAAGCAAATTTCTTTTGTTTTCCATTACTCGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATCCTCCCAGAAGCAAGCAAATTTCTTTTGTTTTCCATTACTCGTA  150

seq1  GTAGGGTTAAAGCAGTGGTAGAGGAAAGTCTTGGATAAAGATTCACCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGTTAAAGCAGTGGTAGAGGAAAGTCTTGGATAAAGATTCACCATC  200

seq1  ATTTGGATATTCATTAATCCGCCCACCACTAGGGTATGGCTGGTAGACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGATATTCATTAATCCGCCCACCACTAGGGTATGGCTGGTAGACTG  250

seq1  GTAAGGAGAGAGAAATCAGAGAACATTCTAGTGTGATGGGTACACTGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGAGAGAGAAATCAGAGAACATTCTAGTGTGATGGGTACACTGGTC  300

seq1  CACTTTAGGGACATGAAGCACCGTGAACTTCAGACCTCCGACATGTCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTAGGGACATGAAGCACCGTGAACTTCAGACCTCCGACATGTCCTA  350

seq1  GCCAAGCAGTAATAGAAGAAAAGATAACAGGGTCTTTGCAGTCTTGGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGCAGTAATAGAAGAAAAGATAACAGGGTCTTTGCAGTCTTGGACT  400

seq1  GAGATGCAAGTCCTACACCAGTGTCATTGGAATCATGGCCAGGTGACTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCAAGTCCTACACCAGTGTCATTGGAATCATGGCCAGGTGACTTC  450

seq1  TCTCTGAACCTCACGATATGAGTCAGGATAGGCAAGGCTATGCTCCAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAACCTCACGATATGAGTCAGGATAGGCAAGGCTATGCTCCAGTA  500

seq1  GCCAGCAAACTTCTGCTTGCCCGTGGTTATATGAAGTACAGGTTTAGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCAAACTTCTGCTTGCCCGTGGTTATATGAAGTACAGGTTTAGTCT  550

seq1  CTCACATAAAGCCCTCTGTAGATGTCAGAACTAAGTGGCTACTCTCCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATAAAGCCCTCTGTAGATGTCAGAACTAAGTGGCTACTCTCCCTG  600

seq1  TGGCTACTTTCAGCAGGGAGAAGGAAGAGAGGTGGTGGATATTCGTTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTACTTTCAGCAGGGAGAAGGAAGAGAGGTGGTGGATATTCGTTTAC  650

seq1  TACTGACCAAAACTGATCAGGTAGTCCCCAACTATCTATTCCCACATAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGACCAAAACTGATCAGGTAGTCCCCAACTATCTATTCCCACATAAG  700

seq1  GGTGTCTGGGAATGAGATCTTCGGAACCACTGAAAACAAAAGCAAAAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTGGGAATGAGATCTTCGGAACCACTGAAAACAAAAGCAAAAGGG  750

seq1  GGCTGTACAACAAAACTGGGCTATTGCTGCCACATTTAATGTTCTCATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTACAACAAAACTGGGCTATTGCTGCCACATTTAATGTTCTCATCT  800

seq1  GCAAGGCGAGGCAATGCCCACATTACAGTGTGAAGGTTTCAGAAGGATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGCGAGGCAATGCCCACATTACAGTGTGAAGGTTTCAGAAGGATCC  850

seq1  ATGAAAGAGGCATAAAACACAATAATCAGTCAACACACACTGTCACTGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGAGGCATAAAACACAATAATCAGTCAACACACACTGTCACTGTC  900

seq1  ACTGAAGCCAAGGGCTCCTCATTTGCTGGGCCCTTGGATGAATTAGTCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACTGAAGCCAAGGGCTCCTCATTTGCTGGGCCCTTGGATGAATTAGTCA-  949

seq1  GATTCTCCAAAGGAACAGAACTGAAAGGATAATTATACATATGCATATAA  1000
      ||||||||||| |||||||||||||| |||||||||||||||||||||||
seq2  GATTCTCCAAA-GAACAGAACTGAAA-GATAATTATACATATGCATATAA  997

seq1  AATTTGTTAAATTGGCTTATATTACTATAGTAACAATAGCTGTCTCACA-  1049
      |||||||  || ||||||||| ||||||||||||||||||||||||||| 
seq2  AATTTGT--AAATGGCTTATA-TACTATAGTAACAATAGCTGTCTCACAC  1044

seq1  CCTGAAAGGCAGAGAGTGGTGCAACTGCCAGTCTCTGAGGCTGGACCCTC  1099
      ||||||| ||| ||||| ||||||||| |||||||||| ||||   ||||
seq2  CCTGAAA-GCAAAGAGT-GTGCAACTG-CAGTCTCTGA-GCTG--ACCTC  1088

seq1  AAAGTCAGTCCCCAGAGAGAACCCCAAAGCTGCT  1133
       |||||||| ||| ||||||    |  |||||||
seq2  -AAGTCAGT-CCCTGAGAGA----CTCAGCTGCT  1116