BAC Information

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BAC

Clone NameB6Ng01-099C22
Chromosome8 (Build37)
Map Location 23,308,798 - 23,309,735
singlet/doubletsinglet
Overlap geneVps36
Upstream geneDefcr-rs7, LOC100041759, LOC672740, EG665969, LOC100041787, Defcr3, Defcr5, LOC100041811, Defcr-rs1, LOC100040668, LOC100041843, LOC100040678, EG665927, LOC100040693, Defcr20, LOC100041890, LOC100041895, EG626682, LOC100040706, EG665956, LOC635093, Defcr26, Defcr17, LOC100041952, Defcr-ps1, AY761184, LOC100040729, Defcr24, LOC100040739, Defb1, Defb50, Defb2, Defb10, Defb9, Defb11, Defb15, Defb35, Defb13, C86695, Ccdc70, Atp7b, Alg11, Nek5, Nek3, Ckap2
Downstream geneRpl30-ps2, Thsd1, Tpte, Slc25a15, LOC547006, Mrps31, AI316807, Slc20a2, LOC100040803, Vdac3, Dkk4, Polb, Ikbkb, Plat, Ap3m2, Myst3, LOC100042253, Ank1, Nkx6-3, Agpat6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099C22.bB6Ng01-099C22.g
ACCDH909047DH909048
length1,240937
definitionDH909047|Mus musculus domesticus DNA, BAC clone: B6Ng01-099C22, 5' end.DH909048|Mus musculus domesticus DNA, BAC clone: B6Ng01-099C22, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagtaagaatgttgcctattcagtgacattcagaattgtctctag
tattgttagagagatagtgaaagaaatcaggctctactatctatacatag
agttagaaatctcagggcaagcttagcaacgtaagtttagaattcttatt
atagttatgtatggcatacattacttattagtagaaagtccccccactta
gaataaaagccgagtcactcctatatacaggaatttacaatggtttagga
agtagatcaggctgtggttttagagtattgcattattcatgagatggtta
gctagagcagaactccctaattagaaccatgacttgggtgtgaaagccct
tgccctaggagtgcaaagacctcacacctctaagacctggcttctaagac
tatagctgaccttagatagagctgactttgtctcagttgttttattgccc
agttccccgcttgtctttgtgtttacattcctctgctttgtgtaagagtc
attaagcatccagtaacctcatttgtaccttgccgatgtgtcacctaact
tccctattttcttctgtataaaaagtttggtgctcaatttgaaaaaatta
cattcagattctacacaatctcgtgtgttgcatctgtttgtcattcattc
gcctactccttgtccacctgcaatcagagacctgttctacgcagacaggg
accaaaaagggtctgcggcactattagactttcaaacaattttttatggc
cagtccttcttaaactattcatacacacagacacagacagacagacagac
acacagacacacacacacgcagagagaaggagcactcccagacaacttct
atgaagctactattattcttctaatagcaaatcctggtataggcacacaa
acacagaaagaaaaactgttgatgaacatagaggcaaaaatactcaataa
atacttacaacaaaatacaggcaacatcaaaagaattagtcacacgccat
gaccagtggatttatccctgaaacacgaggctggtcaacatatactatca
taaatgtaataaaccacataagtgggcttggatacaaaatcatttgatca
ttctcacaaatcagacaaggtctttggcaatccacatgccttcatataaa
gttcaaaggatgtaggaccaagattaccaacaaacacgcagttaaagtaa
accacacacagcgttgaacatctactcctaacggagtagt
gaattcagtatcactgcccccagcaggcagaggcagacagatcaactggt
ctatatatatatatatatagcaagttcaaggtcagactaggctagagagt
aagaccgtgtctcaaaacaaaatgaagacaaacgagagaaaacaaatgga
aactcttgactgggggtagcttaggttgttattcggtgatgaaacaagca
ctcggctgggtcaaggcgctaggtgcccattcgctcgaactcccaataca
cagatgactagacaaagcccagagcagatgctgaacgtgtctcttacatt
attcttctggtctctccaaatcagccggtgtgtactaagaagaagagtcc
cggcatcaaattttatctaaaacgataagattgttacaagaatatcagga
tcactccacattacccagatttccttactcgctaagcatacaatatgaaa
ttactaaacattttagaatgaggattatcacaaattaaaaagcaaagcta
tatgcttcataaatataagctatacatcataatatataattccataatat
atatatatatatatatatatatatatatatatatatatacacatacatat
atagtcattatagaattatggaaaattctatgaaaaatccataatctaga
tatataatcaggagtacttaaataaaatacatccttagtacagcacacat
gccaaagttaaataacaaggtagagctacatatgttatcatggaatgcta
agatagaactggtggggaaaaaggaacctgcaatatattacacagaatta
aatccttcaacaaaatgtgttttctatgtgtgtgtatacacatatctgta
aaagtaccaagaacatgctaaagtgagcgcacggttaacagtgattattt
cggggaaagggtgaggacatgggtgggggggagaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_23308798_23309735
seq2: B6Ng01-099C22.g_67_1002 (reverse)

seq1  TTTCT--CCCCCACCCATGTCCTCACCCCTTCCCCGAAATAATCACTGTT  48
      |||||  ||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTCTCCCCCCCACCCATGTCCTCACCCTTTCCCCGAAATAATCACTGTT  50

seq1  AACCGTGCGCTCACTTTAGCATGTTCTTGGTACTTTTACAGATATGTGTA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGTGCGCTCACTTTAGCATGTTCTTGGTACTTTTACAGATATGTGTA  100

seq1  TACACACACATAGAAAACACATTTTGTTGAAGGATTTAATTCTGTGTAAT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACATAGAAAACACATTTTGTTGAAGGATTTAATTCTGTGTAAT  150

seq1  ATATTGCAGGTTCCTTTTTCCCCACCAGTTCTATCTTAGCATTCCATGAT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGCAGGTTCCTTTTTCCCCACCAGTTCTATCTTAGCATTCCATGAT  200

seq1  AACATATGTAGCTCTACCTTGTTATTTAACTTTGGCATGTGTGCTGTACT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATGTAGCTCTACCTTGTTATTTAACTTTGGCATGTGTGCTGTACT  250

seq1  AAGGATGTATTTTATTTAAGTACTCCTGATTATATATCTAGATTATGGAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGTATTTTATTTAAGTACTCCTGATTATATATCTAGATTATGGAT  300

seq1  TTTTCATAGAATTTTCCATAATTCTATAATGACTATATATGTATGTGTAT  348
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  TTTTCATAGAATTTTCCATAATTCTATAATGACTATATATGTATGTG---  347

seq1  ATATATATATATATATATATATATATATATATATATATATATATTATGGA  398
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TATATATATATATATATATATATATATATATATATATATATATTATGGA  396

seq1  ATTATATATTATGATGTATAGCTTATATTTATGAAGCATATAGCTTTGCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATATTATGATGTATAGCTTATATTTATGAAGCATATAGCTTTGCT  446

seq1  TTTTAATTTGTGATAATCCTCATTCTAAAATGTTTAGTAATTTCATATTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTTGTGATAATCCTCATTCTAAAATGTTTAGTAATTTCATATTG  496

seq1  TATGCTTAGCGAGTAAGGAAATCTGGGTAATGTGGAGTGATCCTGATATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTAGCGAGTAAGGAAATCTGGGTAATGTGGAGTGATCCTGATATT  546

seq1  CTTGTAACAATCTTATCGTTTTAGATAAAATTTGATGCCGGGACTCTTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAACAATCTTATCGTTTTAGATAAAATTTGATGCCGGGACTCTTCT  596

seq1  TCTTAGTACACACCGGCTGATTTGGAGAGACCAGAAGAATAATGTAAGAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTACACACCGGCTGATTTGGAGAGACCAGAAGAATAATGTAAGAG  646

seq1  ACACGTTCAGCATCTGCTCTGGGCTTTGTCTAGTCATCTGTGTATTGGGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTTCAGCATCTGCTCTGGGCTTTGTCTAGTCATCTGTGTATTGGGA  696

seq1  GTTCGAGCGAATGGGCACCTAGCGCCTTGACCCAGCCGAGTGCTTGTTTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGAGCGAATGGGCACCTAGCGCCTTGACCCAGCCGAGTGCTTGTTTC  746

seq1  ATCACCGAATAACAACCTAAGCTACCCCCAGTCAAGAGTTTCCATTTGTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCGAATAACAACCTAAGCTACCCCCAGTCAAGAGTTTCCATTTGTT  796

seq1  TTCTCTCGTTTGTCTTCATTTTGTTTTGAGACACGGTCTTACTCTCTAGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCGTTTGTCTTCATTTTGTTTTGAGACACGGTCTTACTCTCTAGC  846

seq1  CTAGTCTGACCTTGAACTTGCTATATATATATATATATAGACCAGTTGAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTGACCTTGAACTTGCTATATATATATATATATAGACCAGTTGAT  896

seq1  CTGTCTGCCTCTGCCTGCTGGGGGCAGTGATACTGAATTC  938
      ||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGCCTCTGCCTGCTGGGGGCAGTGATACTGAATTC  936