BAC Information

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BAC

Clone NameB6Ng01-099H16
Chromosome8 (Build37)
Map Location 28,850,646 - 28,995,223
singlet/doubletdoublet
Overlap genenone
Upstream geneZfp703, Erlin2, Prosc, Gpr124, Brf2, Rab11fip1, Got1l1, Adrb3, Eif4ebp1, LOC732482, Tex24, Chrnb3, Chrna6, 4921537P18Rik, Gm1698
Downstream geneEG666422, LOC666430, EG666446, LOC100042598, Unc5d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099H16.bB6Ng01-099H16.g
ACCDH909260DH909261
length9661,108
definitionDH909260|Mus musculus domesticus DNA, BAC clone: B6Ng01-099H16, 5' end.DH909261|Mus musculus domesticus DNA, BAC clone: B6Ng01-099H16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,994,631 - 28,995,223)(28,850,646 - 28,851,692)
sequence
gaattcattcaggcagaacgagtattagaaacaaccccagatgctttaca
gtattgtctgaagttcacagatgagtatctggtaggaagacactaactat
tataattcaattaggtatatactatgcaaatccttaacctttagtcctat
acaaaaaccatgattatctaagagaattcaagcagaaattacagaaatga
aaaatatgatggccttacataaagaatctgcagtttggtctaaacacttt
tatttattgtggtagaattaggaagacacaaagatgttaagtgttaagct
atagcaattagcaagcatatctaattcaaggcccgtattgcataagctaa
taccctggtataataattctgcttttattttcaaagagtttattgaaaga
gggcaatttcttgacccttccttgatggttgatattcattagcatgcatg
tgtttctttctttctttttttaattggatattttatttatttacatttca
agttttatcccctttccatgttttccctctgcaaaccccttatcccatcc
ccttttatcctgcttcttatgagggggctcccccccacacccaccaactc
tcgcctcactgccctagcattcctctatactggggcatcaagtattcaca
ggaccaagggcctcccctcccattgatgccagataaggccccttcagccc
ctttagtccttcccctgactgctcctttggggtccctgtgcttagtgagt
ccgatggttggctgagagcatccgaatctgtattggtcaggatctggcaa
agcctctcaggggacagctttatcaggctccagtcagcaagcacttcttg
gtatttacagtagtgtctgggtttggtgtctgcatgtgggatggatcccc
aagtggggcagtcttggatggccttaacttcagtctctactccactcttt
gtccctgtatttcctt
gaattcaagaagaaacaagcagccagatggaataagccaatgagttaaga
aaacctaacagccacattcttactggacacaggaaaatattatctcttta
aagaaattgggctaaagtaaccttttttggttttcagaaaaacatctaag
gttaattagaaatgaacatgggaaatatatgtctcatcacacacaccctg
ccaagctcatttctaactgggctgtaggtctgaatgtgaataacaacatt
tctgattatttgatatagtacagcactatgacttcataatctagaataaa
caaggcttcttttaaaatcgctaactatcaaaaatgatttaaagaggaag
catctattaaattaaacactttaataactattgctaactctaaactggaa
aatcaaatggctagctacagaatgcaggaaggtatttgcaacacataatt
tacttaagagattcatactcaaaactaatttgaaagtatttaatagttga
aaaaaggcgaccatcttaaaagagcaatccacaaaagggctacgaatagg
accagtgaatgtatcaaaagttgccaatgtcttcattctccacgagtgtg
gagtcagtcttcaataatatcctacgaagcaaggaccattgctaactgtc
aatttaattggattaaaaactagggtatttgttaagcatcttcaggtggc
tgcttgtgtaggtatttatagataggtttaaattaagatgaagggcctcc
cctgaatatgtgtgacatcatctcccaggttggggtcccagactgaataa
aactagagagaggagaaacttcttttctttgattctaggttggtgtcaaa
gaccaagctgccaccccttctatgccttcaatgccatgattggcactgtc
cctctactctgtaagtcagaattaacccatctcccctttaggtgctttat
atgaggtatttaatgacacagtagaaaaggaactaatgtactcacaagct
aaatgagagtttgaaattccagtgtggcatagatttggaacatacatctc
attcacctctgtagagtattaatcagcatcattttgtttaatctgcatct
ctagtaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_28994631_28995223
seq2: B6Ng01-099H16.b_45_637 (reverse)

seq1  TGGGTGTGGGGGGGAGCCCCCTCATAAGAAGCAGGATAAAAGGGGATGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTGGGGGGGAGCCCCCTCATAAGAAGCAGGATAAAAGGGGATGGG  50

seq1  ATAAGGGGTTTGCAGAGGGAAAACATGGAAAGGGGATAAAACTTGAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGGGTTTGCAGAGGGAAAACATGGAAAGGGGATAAAACTTGAAATG  100

seq1  TAAATAAATAAAATATCCAATTAAAAAAAGAAAGAAAGAAACACATGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAAAATATCCAATTAAAAAAAGAAAGAAAGAAACACATGCAT  150

seq1  GCTAATGAATATCAACCATCAAGGAAGGGTCAAGAAATTGCCCTCTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATGAATATCAACCATCAAGGAAGGGTCAAGAAATTGCCCTCTTTCA  200

seq1  ATAAACTCTTTGAAAATAAAAGCAGAATTATTATACCAGGGTATTAGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTCTTTGAAAATAAAAGCAGAATTATTATACCAGGGTATTAGCTT  250

seq1  ATGCAATACGGGCCTTGAATTAGATATGCTTGCTAATTGCTATAGCTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATACGGGCCTTGAATTAGATATGCTTGCTAATTGCTATAGCTTAA  300

seq1  CACTTAACATCTTTGTGTCTTCCTAATTCTACCACAATAAATAAAAGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAACATCTTTGTGTCTTCCTAATTCTACCACAATAAATAAAAGTGT  350

seq1  TTAGACCAAACTGCAGATTCTTTATGTAAGGCCATCATATTTTTCATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACCAAACTGCAGATTCTTTATGTAAGGCCATCATATTTTTCATTTC  400

seq1  TGTAATTTCTGCTTGAATTCTCTTAGATAATCATGGTTTTTGTATAGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTTCTGCTTGAATTCTCTTAGATAATCATGGTTTTTGTATAGGAC  450

seq1  TAAAGGTTAAGGATTTGCATAGTATATACCTAATTGAATTATAATAGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTTAAGGATTTGCATAGTATATACCTAATTGAATTATAATAGTTA  500

seq1  GTGTCTTCCTACCAGATACTCATCTGTGAACTTCAGACAATACTGTAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTCCTACCAGATACTCATCTGTGAACTTCAGACAATACTGTAAAG  550

seq1  CATCTGGGGTTGTTTCTAATACTCGTTCTGCCTGAATGAATTC  593
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGGGTTGTTTCTAATACTCGTTCTGCCTGAATGAATTC  593

seq1: chr8_28850646_28851692
seq2: B6Ng01-099H16.g_150_1174

seq1  AAAATATTATCTCTTTAAAGAAATTGGGCTAAAGTAACCTTTTTTGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTATCTCTTTAAAGAAATTGGGCTAAAGTAACCTTTTTTGGTTT  50

seq1  TCAGAAAAACATCTAAGGTTAATTAGAAATGAACATGGGAAATATATGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAAACATCTAAGGTTAATTAGAAATGAACATGGGAAATATATGTC  100

seq1  TCATCACACACACCCTGCCAAGCTCATTTCTAACTGGGCTGTAGGTCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACACACACCCTGCCAAGCTCATTTCTAACTGGGCTGTAGGTCTGA  150

seq1  ATGTGAATAACAACATTTCTGATTATTTGATATAGTACAGCACTATGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAATAACAACATTTCTGATTATTTGATATAGTACAGCACTATGACT  200

seq1  TCATAATCTAGAATAAACAAGGCTTCTTTTAAAATCGCTAACTATCAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATCTAGAATAAACAAGGCTTCTTTTAAAATCGCTAACTATCAAAA  250

seq1  ATGATTTAAAGAGGAAGCATCTATTAAATTAAACACTTTAATAACTATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTAAAGAGGAAGCATCTATTAAATTAAACACTTTAATAACTATTG  300

seq1  CTAACTCTAAACTGGAAAATCAAATGGCTAGCTACAGAATGCAGGAAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCTAAACTGGAAAATCAAATGGCTAGCTACAGAATGCAGGAAGGT  350

seq1  ATTTGCAACACATAATTTACTTAAGAGATTCATACTCAAAACTAATTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCAACACATAATTTACTTAAGAGATTCATACTCAAAACTAATTTGA  400

seq1  AAGTATTTAATAGTTGAAAAAAGGCGACCATCTTAAAAGAGCAATCCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTTAATAGTTGAAAAAAGGCGACCATCTTAAAAGAGCAATCCACA  450

seq1  AAAGGGCTACGAATAGGACCAGTGAATGTATCAAAAGTTGCCAATGTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCTACGAATAGGACCAGTGAATGTATCAAAAGTTGCCAATGTCTT  500

seq1  CATTCTCCACGAGTGTGGAGTCAGTCTTCAATAATATCCTACGAAGCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCCACGAGTGTGGAGTCAGTCTTCAATAATATCCTACGAAGCAAG  550

seq1  GACCATTGCTAACTGTCAATTTAATTGGATTAAAAACTAGGGTATTTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATTGCTAACTGTCAATTTAATTGGATTAAAAACTAGGGTATTTGTT  600

seq1  AAGCATCTTCAGGTGGCTGCTTGTGTAGGTATTTATAGATAGGTTTAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCTTCAGGTGGCTGCTTGTGTAGGTATTTATAGATAGGTTTAAAT  650

seq1  TAAGATGAAGGGCCTCCCCTGAATATGTGTGACATCATCTCCCAGGTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGAAGGGCCTCCCCTGAATATGTGTGACATCATCTCCCAGGTTGG  700

seq1  GGTCCCAGACTGAATAAAACTAGAGAGAGGAGAAACTTCTTTTCTTTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCAGACTGAATAAAACTAGAGAGAGGAGAAACTTCTTTTCTTTGAT  750

seq1  TCTAGGTTGGTGTCAAAGACCAAGCTGCCACCCCTTCTATGCCTTCAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGTTGGTGTCAAAGACCAAGCTGCCACCCCTTCTATGCCTTCAATG  800

seq1  CCATGATTGGCACTGTCCCTCTACTCTGTAAGTCAGAATTAACCCATCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATTGGCACTGTCCCTCTACTCTGTAAGTCAGAATTAACCCATCTC  850

seq1  CCCTTTAGGTGCTTTATATGAGGTATTTAATGACAACAGTAAGAAAAGGA  900
      |||||||||||||||||||||||||||||||||| ||||| |||||||||
seq2  CCCTTTAGGTGCTTTATATGAGGTATTTAATGAC-ACAGT-AGAAAAGGA  898

seq1  ACTAATGTACTCCACAAAGGCTAAAATGAGAAGTTTGAAAATTCCAAGTG  950
      ||||||||||| |||||  ||| ||||||| |||||| ||||||| ||||
seq2  ACTAATGTACT-CACAA--GCT-AAATGAG-AGTTTG-AAATTCC-AGTG  941

seq1  TTGGCATAGATATGGAACAATACCATTCTCATTCACCTCTGGTAGAAGTA  1000
       |||||||||| |||||| ||||   |||||||||||||| |||| ||||
seq2  -TGGCATAGATTTGGAAC-ATAC--ATCTCATTCACCTCT-GTAG-AGTA  985

seq1  TAAATTCAAGCAATCATTTTGTTTTAAATCTGGCAATCTCTAGTAAA  1047
      | |||   ||| ||||||||||||  ||||||   ||||||||||||
seq2  TTAAT--CAGC-ATCATTTTGTTT--AATCTG--CATCTCTAGTAAA  1025