BAC Information

Click to search

BAC

Clone NameB6Ng01-099J03
Chromosome8 (Build37)
Map Location 116,468,516 - 116,612,750
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042061, Mon1b, 4930481F22Rik, Adamts18
Downstream geneNudt7, AI427515, Clec3a, Wwox
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099J03.bB6Ng01-099J03.g
ACCDH909330DH909331
length954887
definitionDH909330|Mus musculus domesticus DNA, BAC clone: B6Ng01-099J03, 5' end.DH909331|Mus musculus domesticus DNA, BAC clone: B6Ng01-099J03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,468,516 - 116,469,470)(116,611,864 - 116,612,750)
sequence
gaattcttcagattttaagcaactacctaagctttttttttttttttttt
tttttttttttaaatcattcactccacttctgagtctctagatgtgcaca
tttccaaagtgccttgctatctagtatggacattgtaatcatccagaaag
aggtctatagcaagaagacctgggttttaatctcagttgaaatatgtgtt
ttagtagaatgtttgctttctaaatatcatcttattctccaagatggggg
tcaaatgtacctgtcctagggattccccagatttgaggtagtgattatat
caaatcatgtttggaaaatcgtgggggttgtggaggctcagtaaataaag
agtttgccatgaaggtatgtggaaggaacttcagatatatagcatccatg
caaatgctaagtgggtgtggtaacccaccagaaattctaactcaggaggc
agaaacagtgtgtctctaaggaaaaaatccttagctagactaatggaatg
gatgtgtctgggctcaactaaaacaccttgccatatacaaggaaagtgat
agaagatacctgttaacctctggacttcacacacacatgcacacacattc
ctacacaggcatgccaaatgccacatacatgtacgtgctggaaaggaaaa
acaattcataaacattttattgaggtatttgctggattatgtgagaaaag
tcctccttaggctccagcatttgaatatttagttgtcagttggtagtgct
gtttggggaggtttctgaactgtggtcttattggaggaagtatataactg
gggaatgagatttgagatgttaagacctctcccttcgtggtggtttgaaa
aagaatagcccattctgctcatattctgcatgcttagtccccagttgtga
ccgatttgggagggttaggagcttatacccttattggtataggaagtaac
cttg
gaattcactaggggctactagtctcaaggctagttacacaacactggtga
atgcatcccagaagcattcaggaaaactctgtctcctatgttacagcggg
atgtcattggccacgacaccaggatactccctcttctcatgagccactgt
gaaatggaaaaaagagagacagctccaaaccgtgtgcatcaaccatttat
cctttgcaaagcatgctctacaatattcagggccttgagtggagagagta
gggtggagccactaactcctgatatctcatacccaacactgaagagtctt
gcacttttcttagaaacttaaggctgagctggactcagctaacagtgcct
gtgagatctccctcttttcctccttcccttctatctgtacccctttctct
tccccttttctcccttcttcccttaccccccttcctagaccccttgtatt
tgaggcaagcactctgtcattcacctgaatcctagcctgtgctttgttga
gttaggctctcacccaggctgatgttaacctcataactctcctaggaccc
ttcacctcccaagtccttggatttataggtattcactgttaccccctggc
ttttctccacttcttgatctgtctgtggcgtagttggctatggacagact
ggctgacgcagggaagcacattcatcttcttcacaagtaagtgacatggc
cctccggtgatgtttcagtcaaagccaacagtagaatgtggcaacaagtg
tgtgcaagagcctgcgtaaactaaacagagacaagaaaccccatacagtg
cctgcctttgtttacccatctttagaatgtgtgctacttagtagtattga
gtaatgggctcagccttaggcaggggtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_116468516_116469470
seq2: B6Ng01-099J03.b_46_999

seq1  GAATTCTTCAGATTTTAAGCAACTACCTAAGCTTTTTTTTTTTTTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGATTTTAAGCAACTACCTAAGCTTTTTTTTTTTTTTTTTT  50

seq1  TTTTTTTTTTTAAATCATTCACTCCACTTCTGAGTCTCTAGATGTGCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTAAATCATTCACTCCACTTCTGAGTCTCTAGATGTGCACA  100

seq1  TTTCCAAAGTGCCTTGCTATCTAGTATGGACATTGTAATCATCCAGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAAGTGCCTTGCTATCTAGTATGGACATTGTAATCATCCAGAAAG  150

seq1  AGGTCTATAGCAAGAAGACCTGGGTTTTAATCTCAGTTGAAATATGTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTATAGCAAGAAGACCTGGGTTTTAATCTCAGTTGAAATATGTGTT  200

seq1  TTAGTAGAATGTTTGCTTTCTAAATATCATCTTATTCTCCAAGATGGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAGAATGTTTGCTTTCTAAATATCATCTTATTCTCCAAGATGGGGG  250

seq1  TCAAATGTACCTGTCCTAGGGATTCCCCAGATTTGAGGTAGTGATTATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGTACCTGTCCTAGGGATTCCCCAGATTTGAGGTAGTGATTATAT  300

seq1  CAAATCATGTTTGGAAAATCGTGGGGGTTGTGGAGGCTCAGTAGATAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAAATCATGTTTGGAAAATCGTGGGGGTTGTGGAGGCTCAGTAAATAAAG  350

seq1  AGTTTGCCATGAAGGTATGTGGAAGGAACTTCAGATATATAGCATCCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCCATGAAGGTATGTGGAAGGAACTTCAGATATATAGCATCCATG  400

seq1  CAAATGCTAAGTGGGTGTGGTAACCCACCAGAAATTCTAACTCAGGAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCTAAGTGGGTGTGGTAACCCACCAGAAATTCTAACTCAGGAGGC  450

seq1  AGAGACAGTGTGTCTCTAAGGAAAAAATCCTTAGCTAGACTAATGGAATG  500
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGTGTGTCTCTAAGGAAAAAATCCTTAGCTAGACTAATGGAATG  500

seq1  GATGTGTCTGGGCTCAACTAAAACACCTTGCCATATACAAGGAAAGTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTCTGGGCTCAACTAAAACACCTTGCCATATACAAGGAAAGTGAT  550

seq1  AGAAGATACCTGTTAACCTCTGGACTTCACACACACATGCACACACATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATACCTGTTAACCTCTGGACTTCACACACACATGCACACACATTC  600

seq1  CTACACAGGCATGCCAAATGCCACATACATGTACGTGCTGGAAAGGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAGGCATGCCAAATGCCACATACATGTACGTGCTGGAAAGGAAAA  650

seq1  ACAATTCATAAACATTTTATTGAGGTATTTGCTGGATTATGTGAGAAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCATAAACATTTTATTGAGGTATTTGCTGGATTATGTGAGAAAAG  700

seq1  TCCTCCTTAGGCTCCAGCATTTGAATATTTAGTTGTCAGTTGGTAGTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTTAGGCTCCAGCATTTGAATATTTAGTTGTCAGTTGGTAGTGCT  750

seq1  GTTTGGGGAGGTTTCTGAACTGTGGTCTTATTGGAGGAAGTATATAACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGGAGGTTTCTGAACTGTGGTCTTATTGGAGGAAGTATATAACTG  800

seq1  GGGAATGAGATTTGAGATGTTAAGACCTCCCCCTTCGTGGTGGTTTGAAA  850
      ||||||||||||||||||||||||||||| ||||||||||||||||| ||
seq2  GGGAATGAGATTTGAGATGTTAAGACCTCTCCCTTCGTGGTGGTTTG-AA  849

seq1  AAAGAATAGCCCAATCTGCTCATATTCTGCATGCTTAGTCCCCAGTTGGT  900
      ||||||||||||| ||||||||||||||||||||||||||||||||| ||
seq2  AAAGAATAGCCCATTCTGCTCATATTCTGCATGCTTAGTCCCCAGTT-GT  898

seq1  GAACGATTTGGGAAGGGTTAGGAGC-TATAGCCTTATTGGTATAGG-AGT  948
      || ||||||||| |||||||||||| |||| ||||||||||||||| |||
seq2  GACCGATTTGGG-AGGGTTAGGAGCTTATACCCTTATTGGTATAGGAAGT  947

seq1  AACCTTG  955
      |||||||
seq2  AACCTTG  954

seq1: chr8_116611864_116612750
seq2: B6Ng01-099J03.g_67_953 (reverse)

seq1  ACACACACACACCCCTGCCTAAGGCTGAGCCCATTACTCAATACTACCTA  50
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACACACACACACCCCTGCCTAAGGCTGAGCCCATTACTCAATACTA-CTA  49

seq1  AGTAGCACACATTCTAAAGATGGGTAAACAAAGGCAGGCACTGTATGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCACACATTCTAAAGATGGGTAAACAAAGGCAGGCACTGTATGGGG  99

seq1  -TTCTTGTCTCTGTTTAGTTTACGCAGGCTCTTGCACACACTTGTTGCCA  149
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGTCTCTGTTTAGTTTACGCAGGCTCTTGCACACACTTGTTGCCA  149

seq1  CATTCTACTGTTGGCTTTGACTGAAACATCACCGGAGGGCCATGTCACTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTACTGTTGGCTTTGACTGAAACATCACCGGAGGGCCATGTCACTT  199

seq1  ACTTGTGAAGAAGATGAATGTGCTTCCCTGCGTCAGCCAGTCTGTCCATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGAAGAAGATGAATGTGCTTCCCTGCGTCAGCCAGTCTGTCCATA  249

seq1  GCCAACTACGCCACAGACAGATCAAGAAGTGGAGAAAAGCCAGGGGGTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACTACGCCACAGACAGATCAAGAAGTGGAGAAAAGCCAGGGGGTAA  299

seq1  CAGTGAATACCTATAAATCCAAGGACTTGGGAGGTGAAGGGTCCTAGGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAATACCTATAAATCCAAGGACTTGGGAGGTGAAGGGTCCTAGGAG  349

seq1  AGTTATGAGGTTAACATCAGCCTGGGTGAGAGCCTAACTCAACAAAGCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGAGGTTAACATCAGCCTGGGTGAGAGCCTAACTCAACAAAGCAC  399

seq1  AGGCTAGGATTCAGGTGAATGACAGAGTGCTTGCCTCAAATACAAGGGGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGGATTCAGGTGAATGACAGAGTGCTTGCCTCAAATACAAGGGGT  449

seq1  CTAGGAAGGGGGGTAAGGGAAGAAGGGAGAAAAGGGGAAGAGAAAGGGGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAAGGGGGGTAAGGGAAGAAGGGAGAAAAGGGGAAGAGAAAGGGGT  499

seq1  ACAGATAGAAGGGAAGGAGGAAAAGAGGGAGATCTCACAGGCACTGTTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAGAAGGGAAGGAGGAAAAGAGGGAGATCTCACAGGCACTGTTAG  549

seq1  CTGAGTCCAGCTCAGCCTTAAGTTTCTAAGAAAAGTGCAAGACTCTTCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCCAGCTCAGCCTTAAGTTTCTAAGAAAAGTGCAAGACTCTTCAG  599

seq1  TGTTGGGTATGAGATATCAGGAGTTAGTGGCTCCACCCTACTCTCTCCAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGTATGAGATATCAGGAGTTAGTGGCTCCACCCTACTCTCTCCAC  649

seq1  TCAAGGCCCTGAATATTGTAGAGCATGCTTTGCAAAGGATAAATGGTTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCCCTGAATATTGTAGAGCATGCTTTGCAAAGGATAAATGGTTGA  699

seq1  TGCACACGGTTTGGAGCTGTCTCTCTTTTTTCCATTTCACAGTGGCTCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACGGTTTGGAGCTGTCTCTCTTTTTTCCATTTCACAGTGGCTCAT  749

seq1  GAGAAGAGGGAGTATCCTGGTGTCGTGGCCAATGACATCCCGCTGTAACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAGGGAGTATCCTGGTGTCGTGGCCAATGACATCCCGCTGTAACA  799

seq1  TAGGAGACAGAGTTTTCCTGAATGCTTCTGGGATGCATTCACCAGTGTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGACAGAGTTTTCCTGAATGCTTCTGGGATGCATTCACCAGTGTTG  849

seq1  TGTAACTAGCCTTGAGACTAGTAGCCCCTAGTGAATTC  887
      ||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTAGCCTTGAGACTAGTAGCCCCTAGTGAATTC  887